Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3041
  Reference Plasmid   DSKIN0049-1_bin.26__k141_56963
  Reference Plasmid Size   12421
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0070290 HJJDLJNP_00001 122 4 Skin 0.67 protein_coding missense_variant MODERATE 64A>G Asn22Asp
M0070291 HJJDLJNP_00001 154 4 Skin 0.67 protein_coding synonymous_variant LOW 96C>G Pro32Pro
M0070292 HJJDLJNP_00001 163 4 Skin 0.67 protein_coding synonymous_variant LOW 105A>G Glu35Glu
M0070293 HJJDLJNP_00001 211 4 Skin 0.67 protein_coding synonymous_variant LOW 153T>C Asp51Asp
M0070294 HJJDLJNP_00001 256 3 Skin 0.50 protein_coding synonymous_variant LOW 198A>G Ala66Ala
M0070295 HJJDLJNP_00004 2449 6 Skin 1.00 protein_coding synonymous_variant LOW 444T>C Pro148Pro
M0070296 HJJDLJNP_00004 2935 6 Skin 1.00 protein_coding synonymous_variant LOW 930T>C Arg310Arg
M0070297 HJJDLJNP_00005 3405 3 Skin 0.50 protein_coding synonymous_variant LOW 378A>G Ala126Ala
M0070298 HJJDLJNP_00005 3411 3 Skin 0.50 protein_coding synonymous_variant LOW 384C>G Arg128Arg
M0070299 HJJDLJNP_00006 3990 6 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -76G>A None
M0070300 HJJDLJNP_00006 4290 3 Skin 0.50 protein_coding synonymous_variant LOW 225T>C Arg75Arg
M0070301 HJJDLJNP_00006 4293 3 Skin 0.50 protein_coding synonymous_variant LOW 228G>T Ala76Ala
M0070302 HJJDLJNP_00006 4647 3 Skin 0.50 protein_coding synonymous_variant LOW 582A>G Ala194Ala
M0070303 HJJDLJNP_00007 5675 3 Skin 0.50 protein_coding synonymous_variant LOW 513T>C Thr171Thr
M0070304 HJJDLJNP_00007 5717 3 Skin 0.50 protein_coding synonymous_variant LOW 555T>C Ile185Ile
M0070305 HJJDLJNP_00007 5750 4 Skin 0.67 protein_coding synonymous_variant LOW 588C>G Arg196Arg
M0070306 HJJDLJNP_00007 5798 4 Skin 0.67 protein_coding synonymous_variant LOW 636C>G Gly212Gly
M0070307 HJJDLJNP_00007 5807 4 Skin 0.67 protein_coding synonymous_variant LOW 645C>G Gly215Gly
M0070308 HJJDLJNP_00007 5840 5 Skin 0.83 protein_coding synonymous_variant LOW 678C>T Tyr226Tyr
M0070309 HJJDLJNP_00007 5936 3 Skin 0.50 protein_coding synonymous_variant LOW 774A>G Ser258Ser
M0070310 HJJDLJNP_00007 5969 4 Skin 0.67 protein_coding synonymous_variant LOW 807C>G Pro269Pro
M0070311 HJJDLJNP_00007 5985 4 Skin 0.67 protein_coding synonymous_variant LOW 823C>T Leu275Leu
M0070312 HJJDLJNP_00008 7143 3 Skin 0.50 protein_coding missense_variant MODERATE 231T>G Asp77Glu
M0070313 HJJDLJNP_00008 7197 5 Skin 0.83 protein_coding synonymous_variant LOW 177G>A Thr59Thr
M0070314 HJJDLJNP_00008 7332 5 Skin 0.83 protein_coding synonymous_variant LOW 42G>A Leu14Leu
M0070315 HJJDLJNP_00008 7334 3 Skin 0.50 protein_coding synonymous_variant LOW 40C>T Leu14Leu
M0070316 HJJDLJNP_00008 7344 5 Skin 0.83 protein_coding synonymous_variant LOW 30T>C Ala10Ala
M0070317 HJJDLJNP_00012 10425 3 Skin 0.50 protein_coding missense_variant MODERATE 83T>C Met28Thr
M0070318 HJJDLJNP_00012 10571 3 Skin 0.50 protein_coding missense_variant MODERATE 229T>C Trp77Arg
M0070319 HJJDLJNP_00013 11205 3 Skin 0.50 protein_coding synonymous_variant LOW 552G>A Glu184Glu
M0070320 HJJDLJNP_00013 11217 3 Skin 0.50 protein_coding synonymous_variant LOW 540T>C Asp180Asp
M0070321 HJJDLJNP_00002 753 3 Skin 0.50 protein_coding missense_variant MODERATE 10T>A Ser4Thr
M0070322 HJJDLJNP_00008 6648 3 Skin 0.50 protein_coding synonymous_variant LOW 726G>A Val242Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term