Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3058
  Reference Plasmid   DSKIN0147-1_bin.9__k141_99870
  Reference Plasmid Size   7169
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0070609 MPANFJGO_00001 888 3 Skin 0.75 protein_coding missense_variant MODERATE 184C>T Leu62Phe
M0070610 MPANFJGO_00001 895 3 Skin 0.75 protein_coding synonymous_variant LOW 177C>G Pro59Pro
M0070611 MPANFJGO_00001 898 3 Skin 0.75 protein_coding missense_variant MODERATE 174G>C Arg58Ser
M0070612 MPANFJGO_00003 3264 3 Skin 0.75 protein_coding synonymous_variant LOW 240C>T His80His
M0070613 MPANFJGO_00003 3306 3 Skin 0.75 protein_coding synonymous_variant LOW 282C>G Gly94Gly
M0070614 MPANFJGO_00003 3378 3 Skin 0.75 protein_coding synonymous_variant LOW 354A>G Val118Val
M0070615 MPANFJGO_00003 3393 3 Skin 0.75 protein_coding synonymous_variant LOW 369T>C Ala123Ala
M0070616 MPANFJGO_00004 4048 3 Skin 0.75 protein_coding missense_variant MODERATE 80T>C Met27Thr
M0070617 MPANFJGO_00004 4053 3 Skin 0.75 protein_coding synonymous_variant LOW 85T>C Leu29Leu
M0070618 MPANFJGO_00004 4062 3 Skin 0.75 protein_coding missense_variant MODERATE 94T>C Ser32Pro
M0070619 MPANFJGO_00004 4067 3 Skin 0.75 protein_coding synonymous_variant LOW 99A>C Ser33Ser
M0070620 MPANFJGO_00004 4069 3 Skin 0.75 protein_coding missense_variant MODERATE 101C>T Pro34Leu
M0070621 MPANFJGO_00004 4331 3 Skin 0.75 protein_coding synonymous_variant LOW 363A>C Ala121Ala
M0070622 MPANFJGO_00004 4547 3 Skin 0.75 protein_coding synonymous_variant LOW 579C>G Val193Val
M0070623 MPANFJGO_00004 4688 3 Skin 0.75 protein_coding synonymous_variant LOW 720G>C Thr240Thr
M0070624 MPANFJGO_00005 5019 3 Skin 0.75 protein_coding missense_variant MODERATE 98G>A Gly33Asp
M0070625 MPANFJGO_00005 5037 3 Skin 0.75 protein_coding missense_variant MODERATE 116G>A Arg39Gln
M0070626 MPANFJGO_00005 5437 3 Skin 0.75 protein_coding synonymous_variant LOW 516G>A Glu172Glu
M0070627 MPANFJGO_00005 5476 3 Skin 0.75 protein_coding synonymous_variant LOW 555C>T Ile185Ile
M0070628 MPANFJGO_00005 5479 3 Skin 0.75 protein_coding synonymous_variant LOW 558C>G Ala186Ala
M0070629 MPANFJGO_00005 5482 3 Skin 0.75 protein_coding synonymous_variant LOW 561C>T Ile187Ile
M0070630 MPANFJGO_00005 5767 3 Skin 0.75 protein_coding synonymous_variant LOW 846A>G Ala282Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term