Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3067
  Reference Plasmid   DT2007044644-1_bin.1__k141_13584
  Reference Plasmid Size   5661
  Reference Plasmid GC Content   0.67
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0070746 MAIPCELB_00002 1805 3 Skin 0.50 protein_coding synonymous_variant LOW 579G>C Pro193Pro
M0070747 MAIPCELB_00002 1811 3 Skin 0.50 protein_coding missense_variant MODERATE 573G>T Leu191Phe
M0070748 MAIPCELB_00002 1813 3 Skin 0.50 protein_coding synonymous_variant LOW 571T>C Leu191Leu
M0070749 MAIPCELB_00002 2058 3 Skin 0.50 protein_coding missense_variant MODERATE 326T>G Val109Gly
M0070750 MAIPCELB_00002 2347 3 Skin 0.50 protein_coding missense_variant MODERATE 37A>G Thr13Ala
M0070751 MAIPCELB_00004 4317 3 Skin 0.50 protein_coding synonymous_variant LOW 576T>C Phe192Phe
M0070752 MAIPCELB_00004 4653 4 Skin 0.67 protein_coding synonymous_variant LOW 240C>G Thr80Thr
M0070753 MAIPCELB_00005 5571 4 Skin 0.67 protein_coding missense_variant MODERATE 61T>C Ser21Pro
M0070754 MAIPCELB_00004 4632 3 Skin 0.50 protein_coding synonymous_variant LOW 261G>C Gly87Gly
M0070755 MAIPCELB_00004 4647 3 Skin 0.50 protein_coding synonymous_variant LOW 246G>C Gly82Gly
M0070756 MAIPCELB_00004 4803 3 Skin 0.50 protein_coding synonymous_variant LOW 90T>C Tyr30Tyr
M0070757 MAIPCELB_00005 5431 3 Skin 0.50 protein_coding synonymous_variant LOW 201G>C Ala67Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term