Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3072
  Reference Plasmid   DT2007045291-1_bin.5__k141_5877
  Reference Plasmid Size   2713
  Reference Plasmid GC Content   0.28
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0070865 AECEKFNO_00001 363 4 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *411T>C None
M0070866 AECEKFNO_00001 509 4 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *265G>A None
M0070867 AECEKFNO_00001 643 5 Skin 0.63 protein_coding downstream_gene_variant MODIFIER *131A>G None
M0070868 AECEKFNO_00001 644 5 Skin 0.63 protein_coding downstream_gene_variant MODIFIER *130G>C None
M0070869 AECEKFNO_00001 649 5 Skin 0.63 protein_coding downstream_gene_variant MODIFIER *125T>C None
M0070870 AECEKFNO_00001 658 3 Skin 0.38 protein_coding downstream_gene_variant MODIFIER *116C>T None
M0070871 AECEKFNO_00001 661 3 Skin 0.38 protein_coding downstream_gene_variant MODIFIER *113G>A None
M0070872 AECEKFNO_00001 834 6 Skin 0.75 protein_coding synonymous_variant LOW 768G>A Leu256Leu
M0070873 AECEKFNO_00001 1699 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -98T>A None
M0070874 AECEKFNO_00001 1742 6 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -141T>A None
M0070875 AECEKFNO_00001 1756 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -155A>T None
M0070876 AECEKFNO_00001 1757 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -156C>T None
M0070877 AECEKFNO_00001 1758 7 Skin 0.88 protein_coding upstream_gene_variant MODIFIER -157T>G None
M0070878 AECEKFNO_00001 1820 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -219C>G None
M0070879 AECEKFNO_00001 1850 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -249G>T None
M0070880 AECEKFNO_00001 2104 6 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -503C>T None
M0070881 AECEKFNO_00001 2114 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -513A>T None
M0070882 AECEKFNO_00001 2504 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -903A>C None
M0070883 AECEKFNO_00001 2567 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -966A>G None
M0070884 AECEKFNO_00001 2568 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -967C>T None
M0070885 AECEKFNO_00001 2606 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -1005A>G None
M0070886 AECEKFNO_00001 1738 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -137T>A None
M0070887 AECEKFNO_00001 2468 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -867T>A None
M0070888 AECEKFNO_00001 366 3 Skin 0.38 protein_coding downstream_gene_variant MODIFIER *408G>T None
M0070889 AECEKFNO_00001 406 3 Skin 0.38 protein_coding downstream_gene_variant MODIFIER *368T>C None
M0070890 AECEKFNO_00001 585 3 Skin 0.38 protein_coding downstream_gene_variant MODIFIER *189T>C None
M0070891 AECEKFNO_00001 981 3 Skin 0.38 protein_coding synonymous_variant LOW 621T>C Asp207Asp
M0070892 AECEKFNO_00001 984 4 Skin 0.50 protein_coding missense_variant MODERATE 618T>A Asn206Lys
M0070893 AECEKFNO_00001 1104 3 Skin 0.38 protein_coding synonymous_variant LOW 498A>G Gly166Gly
M0070894 AECEKFNO_00001 2414 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -813C>T None
M0070895 AECEKFNO_00001 2425 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -824A>T None
M0070896 AECEKFNO_00001 2432 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -831T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term