Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3074
  Reference Plasmid   DT2007045299-1_bin.6__k141_12394
  Reference Plasmid Size   7244
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0070903 AHJOGEBE_00001 897 5 Skin 0.11 protein_coding missense_variant MODERATE 950A>G Glu317Gly
M0070904 AHJOGEBE_00001 908 5 Skin 0.11 protein_coding missense_variant MODERATE 939A>T Glu313Asp
M0070905 AHJOGEBE_00001 1031 8 Skin 0.17 protein_coding synonymous_variant LOW 816C>T Thr272Thr
M0070906 AHJOGEBE_00001 1139 5 Skin 0.11 protein_coding synonymous_variant LOW 708T>C Gly236Gly
M0070907 AHJOGEBE_00001 1352 15 Skin 0.32 protein_coding synonymous_variant LOW 495T>G Thr165Thr
M0070908 AHJOGEBE_00001 1968 21 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -122T>C None
M0070909 AHJOGEBE_00002 2587 16 Skin 0.34 protein_coding synonymous_variant LOW 474A>G Lys158Lys
M0070910 AHJOGEBE_00002 2629 3 Skin 0.06 protein_coding synonymous_variant LOW 432T>C Val144Val
M0070911 AHJOGEBE_00002 2794 20 Skin 0.43 protein_coding synonymous_variant LOW 267G>T Thr89Thr
M0070912 AHJOGEBE_00001 3112 17 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1266C>T None
M0070913 AHJOGEBE_00003 3320 27 Skin 0.57 protein_coding missense_variant MODERATE 199A>G Ile67Val
M0070914 AHJOGEBE_00003 3366 15 Skin 0.32 protein_coding synonymous_variant LOW 153C>T Phe51Phe
M0070915 AHJOGEBE_00003 3371 28 Skin 0.60 protein_coding missense_variant MODERATE 148T>C Cys50Arg
M0070916 AHJOGEBE_00003 3406 15 Skin 0.32 protein_coding missense_variant MODERATE 113A>G Lys38Arg
M0070917 AHJOGEBE_00003 3432 15 Skin 0.32 protein_coding synonymous_variant LOW 87G>A Ala29Ala
M0070918 AHJOGEBE_00003 3435 8 Skin 0.17 protein_coding synonymous_variant LOW 84T>C Asp28Asp
M0070919 AHJOGEBE_00003 3444 3 Skin 0.06 protein_coding synonymous_variant LOW 75G>A Thr25Thr
M0070920 AHJOGEBE_00003 3453 22 Skin 0.47 protein_coding missense_variant MODERATE 66T>G Asp22Glu
M0070921 AHJOGEBE_00003 3471 4 Skin 0.09 protein_coding synonymous_variant LOW 48C>T Ser16Ser
M0070922 AHJOGEBE_00003 3473 9 Skin 0.19 protein_coding missense_variant MODERATE 46T>G Ser16Ala
M0070923 AHJOGEBE_00004 3581 42 Skin 0.89 protein_coding missense_variant MODERATE 841A>C Ile281Leu
M0070924 AHJOGEBE_00004 3675 8 Skin 0.17 protein_coding synonymous_variant LOW 747A>G Gln249Gln
M0070925 AHJOGEBE_00004 4260 17 Skin 0.36 protein_coding synonymous_variant LOW 162A>C Ile54Ile
M0070926 AHJOGEBE_00004 4293 16 Skin 0.34 protein_coding synonymous_variant LOW 129C>T Ile43Ile
M0070927 AHJOGEBE_00004 4314 18 Skin 0.38 protein_coding synonymous_variant LOW 108T>C Gly36Gly
M0070928 AHJOGEBE_00004 4356 21 Skin 0.45 protein_coding synonymous_variant LOW 66C>T Ile22Ile
M0070929 AHJOGEBE_00004 4359 21 Skin 0.45 protein_coding synonymous_variant LOW 63T>G Thr21Thr
M0070930 AHJOGEBE_00001 4596 12 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -2750C>T None
M0070931 AHJOGEBE_00005 5095 10 Skin 0.21 protein_coding synonymous_variant LOW 1182C>A Gly394Gly
M0070932 AHJOGEBE_00005 5131 14 Skin 0.30 protein_coding synonymous_variant LOW 1146T>C Ser382Ser
M0070933 AHJOGEBE_00005 5293 3 Skin 0.06 protein_coding synonymous_variant LOW 984G>A Leu328Leu
M0070934 AHJOGEBE_00005 5320 7 Skin 0.15 protein_coding synonymous_variant LOW 957T>C Gly319Gly
M0070935 AHJOGEBE_00005 5329 7 Skin 0.15 protein_coding synonymous_variant LOW 948T>A Ile316Ile
M0070936 AHJOGEBE_00005 5335 7 Skin 0.15 protein_coding synonymous_variant LOW 942A>G Arg314Arg
M0070937 AHJOGEBE_00005 5350 7 Skin 0.15 protein_coding synonymous_variant LOW 927T>C Val309Val
M0070938 AHJOGEBE_00005 5452 12 Skin 0.26 protein_coding synonymous_variant LOW 825T>A Gly275Gly
M0070939 AHJOGEBE_00005 5787 17 Skin 0.36 protein_coding missense_variant MODERATE 490T>C Ser164Pro
M0070940 AHJOGEBE_00005 5834 14 Skin 0.30 protein_coding missense_variant MODERATE 443A>C Glu148Ala
M0070941 AHJOGEBE_00005 5845 14 Skin 0.30 protein_coding synonymous_variant LOW 432C>T His144His
M0070942 AHJOGEBE_00005 5860 13 Skin 0.28 protein_coding missense_variant MODERATE 417A>C Leu139Phe
M0070943 AHJOGEBE_00005 5905 15 Skin 0.32 protein_coding synonymous_variant LOW 372T>C Ser124Ser
M0070944 AHJOGEBE_00005 5911 13 Skin 0.28 protein_coding synonymous_variant LOW 366G>A Thr122Thr
M0070945 AHJOGEBE_00001 3526 29 Skin 0.62 protein_coding upstream_gene_variant MODIFIER -1680A>C None
M0070946 AHJOGEBE_00004 3750 27 Skin 0.57 protein_coding synonymous_variant LOW 672A>G Ala224Ala
M0070947 AHJOGEBE_00005 4957 3 Skin 0.06 protein_coding synonymous_variant LOW 1320A>G Thr440Thr
M0070948 AHJOGEBE_00005 5122 10 Skin 0.21 protein_coding synonymous_variant LOW 1155C>T Phe385Phe
M0070949 AHJOGEBE_00005 5220 7 Skin 0.15 protein_coding missense_variant MODERATE 1057G>A Asp353Asn
M0070950 AHJOGEBE_00005 5935 12 Skin 0.26 protein_coding synonymous_variant LOW 342A>G Thr114Thr
M0070951 AHJOGEBE_00005 5954 14 Skin 0.30 protein_coding missense_variant MODERATE 323G>A Ser108Asn
M0070952 AHJOGEBE_00001 2111 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -265T>C None
M0070953 AHJOGEBE_00001 2115 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -269G>A None
M0070954 AHJOGEBE_00002 2151 4 Skin 0.09 protein_coding missense_variant MODERATE 910G>T Ala304Ser
M0070955 AHJOGEBE_00002 2181 3 Skin 0.06 protein_coding missense_variant MODERATE 880G>T Ala294Ser
M0070956 AHJOGEBE_00002 2247 9 Skin 0.19 protein_coding missense_variant MODERATE 814T>A Leu272Ile
M0070957 AHJOGEBE_00002 2343 7 Skin 0.15 protein_coding missense_variant MODERATE 718A>G Ile240Val
M0070958 AHJOGEBE_00002 2369 8 Skin 0.17 protein_coding missense_variant MODERATE 692G>A Cys231Tyr
M0070959 AHJOGEBE_00002 2401 8 Skin 0.17 protein_coding synonymous_variant LOW 660A>G Val220Val
M0070960 AHJOGEBE_00002 2419 8 Skin 0.17 protein_coding missense_variant MODERATE 642T>A Asp214Glu
M0070961 AHJOGEBE_00002 2494 21 Skin 0.45 protein_coding synonymous_variant LOW 567G>T Thr189Thr
M0070962 AHJOGEBE_00002 2515 5 Skin 0.11 protein_coding synonymous_variant LOW 546T>C Asp182Asp
M0070963 AHJOGEBE_00002 2530 6 Skin 0.13 protein_coding synonymous_variant LOW 531T>A Leu177Leu
M0070964 AHJOGEBE_00002 2675 26 Skin 0.55 protein_coding missense_variant MODERATE 386T>C Val129Ala
M0070965 AHJOGEBE_00002 2871 22 Skin 0.47 protein_coding missense_variant MODERATE 190A>G Ile64Val
M0070966 AHJOGEBE_00003 3137 4 Skin 0.09 protein_coding synonymous_variant LOW 382C>T Leu128Leu
M0070967 AHJOGEBE_00003 3156 10 Skin 0.21 protein_coding synonymous_variant LOW 363C>T Thr121Thr
M0070968 AHJOGEBE_00003 3180 20 Skin 0.43 protein_coding synonymous_variant LOW 339G>A Gly113Gly
M0070969 AHJOGEBE_00003 3227 38 Skin 0.81 protein_coding missense_variant MODERATE 292A>G Thr98Ala
M0070970 AHJOGEBE_00003 3246 25 Skin 0.53 protein_coding synonymous_variant LOW 273C>T Asp91Asp
M0070971 AHJOGEBE_00003 3285 4 Skin 0.09 protein_coding synonymous_variant LOW 234A>T Ala78Ala
M0070972 AHJOGEBE_00003 3291 3 Skin 0.06 protein_coding synonymous_variant LOW 228G>T Ala76Ala
M0070973 AHJOGEBE_00004 3723 5 Skin 0.11 protein_coding synonymous_variant LOW 699A>G Ser233Ser
M0070974 AHJOGEBE_00004 3855 29 Skin 0.62 protein_coding synonymous_variant LOW 567A>G Gly189Gly
M0070975 AHJOGEBE_00004 3897 7 Skin 0.15 protein_coding synonymous_variant LOW 525G>A Thr175Thr
M0070976 AHJOGEBE_00004 3944 4 Skin 0.09 protein_coding missense_variant MODERATE 478G>A Val160Ile
M0070977 AHJOGEBE_00004 3956 31 Skin 0.66 protein_coding missense_variant MODERATE 466A>C Ile156Leu
M0070978 AHJOGEBE_00004 4032 30 Skin 0.64 protein_coding synonymous_variant LOW 390C>T Ile130Ile
M0070979 AHJOGEBE_00004 4077 22 Skin 0.47 protein_coding synonymous_variant LOW 345C>A Pro115Pro
M0070980 AHJOGEBE_00004 4110 17 Skin 0.36 protein_coding synonymous_variant LOW 312T>A Ser104Ser
M0070981 AHJOGEBE_00001 2130 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -284A>G None
M0070982 AHJOGEBE_00002 2164 9 Skin 0.19 protein_coding synonymous_variant LOW 897T>G Arg299Arg
M0070983 AHJOGEBE_00002 2203 9 Skin 0.19 protein_coding synonymous_variant LOW 858G>A Thr286Thr
M0070984 AHJOGEBE_00002 2319 13 Skin 0.28 protein_coding missense_variant MODERATE 742A>G Ile248Val
M0070985 AHJOGEBE_00002 2335 13 Skin 0.28 protein_coding synonymous_variant LOW 726G>T Ala242Ala
M0070986 AHJOGEBE_00002 2370 6 Skin 0.13 protein_coding missense_variant MODERATE 691T>A Cys231Ser
M0070987 AHJOGEBE_00002 2500 6 Skin 0.13 protein_coding synonymous_variant LOW 561C>T Asn187Asn
M0070988 AHJOGEBE_00002 2554 10 Skin 0.21 protein_coding synonymous_variant LOW 507G>A Pro169Pro
M0070989 AHJOGEBE_00002 2671 15 Skin 0.32 protein_coding missense_variant MODERATE 390T>A Asp130Glu
M0070990 AHJOGEBE_00002 2674 15 Skin 0.32 protein_coding synonymous_variant LOW 387G>A Val129Val
M0070991 AHJOGEBE_00002 2974 13 Skin 0.28 protein_coding synonymous_variant LOW 87A>G Thr29Thr
M0070992 AHJOGEBE_00002 2983 13 Skin 0.28 protein_coding synonymous_variant LOW 78C>T Pro26Pro
M0070993 AHJOGEBE_00003 3171 7 Skin 0.15 protein_coding synonymous_variant LOW 348T>A Arg116Arg
M0070994 AHJOGEBE_00003 3293 6 Skin 0.13 protein_coding missense_variant MODERATE 226G>A Ala76Thr
M0070995 AHJOGEBE_00004 3837 19 Skin 0.40 protein_coding synonymous_variant LOW 585C>T Val195Val
M0070996 AHJOGEBE_00004 3876 18 Skin 0.38 protein_coding synonymous_variant LOW 546T>A Ala182Ala
M0070997 AHJOGEBE_00004 3885 18 Skin 0.38 protein_coding synonymous_variant LOW 537A>T Gly179Gly
M0070998 AHJOGEBE_00004 3968 19 Skin 0.40 protein_coding synonymous_variant LOW 454C>A Arg152Arg
M0070999 AHJOGEBE_00004 3993 22 Skin 0.47 protein_coding synonymous_variant LOW 429G>A Lys143Lys
M0071000 AHJOGEBE_00001 4448 16 Skin 0.34 protein_coding upstream_gene_variant MODIFIER -2602T>A None
M0071001 AHJOGEBE_00001 4456 17 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2610A>T None
M0071002 AHJOGEBE_00001 4487 13 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -2641G>A None
M0071003 AHJOGEBE_00001 4491 9 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2645G>A None
M0071004 AHJOGEBE_00001 115 6 Skin 0.13 protein_coding downstream_gene_variant MODIFIER *241C>A None
M0071005 AHJOGEBE_00001 138 7 Skin 0.15 protein_coding downstream_gene_variant MODIFIER *218A>G None
M0071006 AHJOGEBE_00001 299 9 Skin 0.19 protein_coding downstream_gene_variant MODIFIER *57T>A None
M0071007 AHJOGEBE_00001 348 3 Skin 0.06 protein_coding downstream_gene_variant MODIFIER *8A>G None
M0071008 AHJOGEBE_00001 623 4 Skin 0.09 protein_coding synonymous_variant LOW 1224A>G Leu408Leu
M0071009 AHJOGEBE_00001 635 4 Skin 0.09 protein_coding synonymous_variant LOW 1212T>C Ser404Ser
M0071010 AHJOGEBE_00001 722 4 Skin 0.09 protein_coding synonymous_variant LOW 1125G>A Thr375Thr
M0071011 AHJOGEBE_00001 740 4 Skin 0.09 protein_coding synonymous_variant LOW 1107A>G Ala369Ala
M0071012 AHJOGEBE_00001 794 4 Skin 0.09 protein_coding synonymous_variant LOW 1053T>C Arg351Arg
M0071013 AHJOGEBE_00001 839 4 Skin 0.09 protein_coding synonymous_variant LOW 1008T>A Pro336Pro
M0071014 AHJOGEBE_00001 857 4 Skin 0.09 protein_coding missense_variant MODERATE 990T>A Asn330Lys
M0071015 AHJOGEBE_00001 881 4 Skin 0.09 protein_coding synonymous_variant LOW 966T>G Ala322Ala
M0071016 AHJOGEBE_00002 2341 3 Skin 0.06 protein_coding synonymous_variant LOW 720T>C Ile240Ile
M0071017 AHJOGEBE_00002 2344 3 Skin 0.06 protein_coding missense_variant MODERATE 717G>A Met239Ile
M0071018 AHJOGEBE_00002 2851 4 Skin 0.09 protein_coding synonymous_variant LOW 210C>T Ala70Ala
M0071019 AHJOGEBE_00003 3195 19 Skin 0.40 protein_coding synonymous_variant LOW 324C>T Ser108Ser
M0071020 AHJOGEBE_00001 4547 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2701T>C None
M0071021 AHJOGEBE_00001 4557 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2711T>C None
M0071022 AHJOGEBE_00001 4573 7 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2727T>C None
M0071023 AHJOGEBE_00004 4086 11 Skin 0.23 protein_coding synonymous_variant LOW 336C>T Gly112Gly
M0071024 AHJOGEBE_00006 6360 8 Skin 0.17 protein_coding synonymous_variant LOW 96A>G Arg32Arg
M0071025 AHJOGEBE_00007 6493 8 Skin 0.17 protein_coding synonymous_variant LOW 648T>C Asn216Asn
M0071026 AHJOGEBE_00007 6509 9 Skin 0.19 protein_coding missense_variant MODERATE 632C>T Thr211Ile
M0071027 AHJOGEBE_00007 6593 8 Skin 0.17 protein_coding missense_variant MODERATE 548A>G Asp183Gly
M0071028 AHJOGEBE_00001 1184 4 Skin 0.09 protein_coding missense_variant MODERATE 663A>T Lys221Asn
M0071029 AHJOGEBE_00001 1197 4 Skin 0.09 protein_coding stop_gained HIGH 650C>A Ser217*
M0071030 AHJOGEBE_00001 1198 7 Skin 0.15 protein_coding missense_variant MODERATE 649T>G Ser217Ala
M0071031 AHJOGEBE_00001 1202 4 Skin 0.09 protein_coding synonymous_variant LOW 645A>G Val215Val
M0071032 AHJOGEBE_00001 1217 4 Skin 0.09 protein_coding synonymous_variant LOW 630G>A Ser210Ser
M0071033 AHJOGEBE_00001 1228 7 Skin 0.15 protein_coding missense_variant MODERATE 619A>C Lys207Gln
M0071034 AHJOGEBE_00001 1241 7 Skin 0.15 protein_coding synonymous_variant LOW 606T>C Tyr202Tyr
M0071035 AHJOGEBE_00004 4089 5 Skin 0.11 protein_coding synonymous_variant LOW 333T>G Leu111Leu
M0071036 AHJOGEBE_00001 986 10 Skin 0.21 protein_coding synonymous_variant LOW 861C>T Asp287Asp
M0071037 AHJOGEBE_00001 1004 7 Skin 0.15 protein_coding synonymous_variant LOW 843T>C Phe281Phe
M0071038 AHJOGEBE_00001 2072 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -226C>T None
M0071039 AHJOGEBE_00002 2734 3 Skin 0.06 protein_coding synonymous_variant LOW 327G>A Thr109Thr
M0071040 AHJOGEBE_00002 2773 3 Skin 0.06 protein_coding synonymous_variant LOW 288G>A Gly96Gly
M0071041 AHJOGEBE_00002 2786 3 Skin 0.06 protein_coding missense_variant MODERATE 275G>A Ser92Asn
M0071042 AHJOGEBE_00004 3923 4 Skin 0.09 protein_coding missense_variant MODERATE 499A>C Ile167Leu
M0071043 AHJOGEBE_00004 4053 4 Skin 0.09 protein_coding synonymous_variant LOW 369A>G Gly123Gly
M0071044 AHJOGEBE_00004 4059 4 Skin 0.09 protein_coding synonymous_variant LOW 363C>A Ile121Ile
M0071045 AHJOGEBE_00005 4723 5 Skin 0.11 protein_coding synonymous_variant LOW 1554T>C Tyr518Tyr
M0071046 AHJOGEBE_00005 4729 5 Skin 0.11 protein_coding synonymous_variant LOW 1548T>C Ala516Ala
M0071047 AHJOGEBE_00005 4738 6 Skin 0.13 protein_coding synonymous_variant LOW 1539C>T Val513Val
M0071048 AHJOGEBE_00005 4942 6 Skin 0.13 protein_coding synonymous_variant LOW 1335G>A Lys445Lys
M0071049 AHJOGEBE_00005 4984 4 Skin 0.09 protein_coding synonymous_variant LOW 1293C>T Gly431Gly
M0071050 AHJOGEBE_00005 4990 4 Skin 0.09 protein_coding synonymous_variant LOW 1287T>C Ile429Ile
M0071051 AHJOGEBE_00005 5002 4 Skin 0.09 protein_coding synonymous_variant LOW 1275T>C Ser425Ser
M0071052 AHJOGEBE_00005 5009 4 Skin 0.09 protein_coding missense_variant MODERATE 1268T>A Phe423Tyr
M0071053 AHJOGEBE_00001 1404 4 Skin 0.09 protein_coding missense_variant MODERATE 443A>G Asn148Ser
M0071054 AHJOGEBE_00001 1445 3 Skin 0.06 protein_coding synonymous_variant LOW 402T>C Pro134Pro
M0071055 AHJOGEBE_00001 1571 5 Skin 0.11 protein_coding synonymous_variant LOW 276T>C Asn92Asn
M0071056 AHJOGEBE_00001 1739 3 Skin 0.06 protein_coding synonymous_variant LOW 108G>A Lys36Lys
M0071057 AHJOGEBE_00001 1751 4 Skin 0.09 protein_coding synonymous_variant LOW 96C>T Ser32Ser
M0071058 AHJOGEBE_00001 1777 3 Skin 0.06 protein_coding synonymous_variant LOW 70C>T Leu24Leu
M0071059 AHJOGEBE_00002 2575 3 Skin 0.06 protein_coding synonymous_variant LOW 486T>G Thr162Thr
M0071060 AHJOGEBE_00001 3530 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1684G>A None
M0071061 AHJOGEBE_00001 4592 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2746T>C None
M0071062 AHJOGEBE_00001 4633 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -2787T>C None
M0071063 AHJOGEBE_00001 4653 10 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2807T>A None
M0071064 AHJOGEBE_00001 2094 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -248T>C None
M0071065 AHJOGEBE_00001 2114 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -268A>G None
M0071066 AHJOGEBE_00002 2333 3 Skin 0.06 protein_coding missense_variant MODERATE 728G>T Cys243Phe
M0071067 AHJOGEBE_00002 2914 4 Skin 0.09 protein_coding synonymous_variant LOW 147A>T Ile49Ile
M0071068 AHJOGEBE_00001 4663 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2817T>C None
M0071069 AHJOGEBE_00007 6523 6 Skin 0.13 protein_coding synonymous_variant LOW 618C>T Asn206Asn
M0071070 AHJOGEBE_00002 2251 5 Skin 0.11 protein_coding synonymous_variant LOW 810C>T Ser270Ser
M0071071 AHJOGEBE_00004 3558 4 Skin 0.09 protein_coding synonymous_variant LOW 864C>T Ile288Ile
M0071072 AHJOGEBE_00004 4377 4 Skin 0.09 protein_coding synonymous_variant LOW 45T>C Gly15Gly
M0071073 AHJOGEBE_00006 6393 6 Skin 0.13 protein_coding synonymous_variant LOW 63C>A Val21Val
M0071074 AHJOGEBE_00001 4634 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2788A>G None
M0071075 AHJOGEBE_00005 4708 5 Skin 0.11 protein_coding missense_variant MODERATE 1569T>G Asn523Lys
M0071076 AHJOGEBE_00005 4744 5 Skin 0.11 protein_coding synonymous_variant LOW 1533C>T Gly511Gly
M0071077 AHJOGEBE_00005 4762 5 Skin 0.11 protein_coding synonymous_variant LOW 1515T>C His505His
M0071078 AHJOGEBE_00005 4773 5 Skin 0.11 protein_coding missense_variant MODERATE 1504G>A Glu502Lys
M0071079 AHJOGEBE_00005 4774 5 Skin 0.11 protein_coding synonymous_variant LOW 1503T>A Val501Val
M0071080 AHJOGEBE_00001 1945 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -99A>T None
M0071081 AHJOGEBE_00001 2057 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -211G>T None
M0071082 AHJOGEBE_00007 6878 3 Skin 0.06 protein_coding missense_variant MODERATE 263C>A Ala88Asp
M0071083 AHJOGEBE_00001 4511 5 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2665A>G None
M0071084 AHJOGEBE_00001 34 3 Skin 0.06 protein_coding downstream_gene_variant MODIFIER *322G>A None
M0071085 AHJOGEBE_00001 1192 3 Skin 0.06 protein_coding missense_variant MODERATE 655C>G Leu219Val
M0071086 AHJOGEBE_00001 1903 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -57T>G None
M0071087 AHJOGEBE_00005 5689 3 Skin 0.06 protein_coding synonymous_variant LOW 588A>C Gly196Gly
M0071088 AHJOGEBE_00005 5737 4 Skin 0.09 protein_coding synonymous_variant LOW 540G>A Leu180Leu
M0071089 AHJOGEBE_00005 5749 3 Skin 0.06 protein_coding synonymous_variant LOW 528A>T Leu176Leu
M0071090 AHJOGEBE_00005 5782 3 Skin 0.06 protein_coding synonymous_variant LOW 495T>C Leu165Leu
M0071091 AHJOGEBE_00005 5791 4 Skin 0.09 protein_coding synonymous_variant LOW 486T>C Val162Val
M0071092 AHJOGEBE_00005 6013 4 Skin 0.09 protein_coding synonymous_variant LOW 264A>T Leu88Leu
M0071093 AHJOGEBE_00005 6025 3 Skin 0.06 protein_coding synonymous_variant LOW 252T>C Val84Val
M0071094 AHJOGEBE_00005 6121 5 Skin 0.11 protein_coding synonymous_variant LOW 156A>G Lys52Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term