Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C264
  Reference Plasmid   LR962783.1
  Reference Plasmid Size   61120
  Reference Plasmid GC Content   0.34
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0150217 KAPDECLB_00010 14117 5 Gut 0.71 protein_coding synonymous_variant LOW 276C>T Ile92Ile
M0150218 KAPDECLB_00010 14144 6 Gut 0.86 protein_coding synonymous_variant LOW 303G>A Thr101Thr
M0150219 KAPDECLB_00010 14147 6 Gut 0.86 protein_coding synonymous_variant LOW 306C>T Pro102Pro
M0150220 KAPDECLB_00010 14160 6 Gut 0.86 protein_coding missense_variant MODERATE 319G>A Val107Ile
M0150221 KAPDECLB_00011 14342 6 Gut 0.86 protein_coding synonymous_variant LOW 117C>T Thr39Thr
M0150222 KAPDECLB_00011 14417 6 Gut 0.86 protein_coding synonymous_variant LOW 192A>T Thr64Thr
M0150223 KAPDECLB_00011 14561 6 Gut 0.86 protein_coding synonymous_variant LOW 336A>C Thr112Thr
M0150224 KAPDECLB_00011 14746 6 Gut 0.86 protein_coding missense_variant MODERATE 521T>C Val174Ala
M0150225 KAPDECLB_00011 15029 6 Gut 0.86 protein_coding synonymous_variant LOW 804T>C Phe268Phe
M0150226 KAPDECLB_00011 15070 6 Gut 0.86 protein_coding missense_variant MODERATE 845G>A Arg282Lys
M0150227 KAPDECLB_00012 15195 6 Gut 0.86 protein_coding missense_variant MODERATE 71G>A Arg24Lys
M0150228 KAPDECLB_00012 15253 6 Gut 0.86 protein_coding missense_variant MODERATE 129C>A Asn43Lys
M0150229 KAPDECLB_00012 15319 6 Gut 0.86 protein_coding synonymous_variant LOW 195C>T Phe65Phe
M0150230 KAPDECLB_00012 15845 6 Gut 0.86 protein_coding synonymous_variant LOW 721C>T Leu241Leu
M0150231 KAPDECLB_00012 15874 6 Gut 0.86 protein_coding synonymous_variant LOW 750A>G Gly250Gly
M0150232 KAPDECLB_00012 15884 6 Gut 0.86 protein_coding missense_variant MODERATE 760A>C Ile254Leu
M0150233 KAPDECLB_00012 15907 6 Gut 0.86 protein_coding synonymous_variant LOW 783A>G Leu261Leu
M0150234 KAPDECLB_00013 16133 6 Gut 0.86 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0150235 KAPDECLB_00013 16226 6 Gut 0.86 protein_coding synonymous_variant LOW 183C>T Asp61Asp
M0150236 KAPDECLB_00013 16316 6 Gut 0.86 protein_coding synonymous_variant LOW 273G>A Glu91Glu
M0150237 KAPDECLB_00014 16485 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -40C>T None
M0150238 KAPDECLB_00014 16491 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -34C>T None
M0150239 KAPDECLB_00014 16623 6 Gut 0.86 protein_coding synonymous_variant LOW 99T>C Gly33Gly
M0150240 KAPDECLB_00014 16686 6 Gut 0.86 protein_coding synonymous_variant LOW 162T>C Ala54Ala
M0150241 KAPDECLB_00014 16722 6 Gut 0.86 protein_coding synonymous_variant LOW 198C>T Val66Val
M0150242 KAPDECLB_00015 16770 6 Gut 0.86 protein_coding synonymous_variant LOW 6A>G Lys2Lys
M0150243 KAPDECLB_00015 16794 6 Gut 0.86 protein_coding synonymous_variant LOW 30C>T Asn10Asn
M0150244 KAPDECLB_00015 16823 6 Gut 0.86 protein_coding missense_variant MODERATE 59C>A Ala20Glu
M0150245 KAPDECLB_00015 16847 6 Gut 0.86 protein_coding missense_variant MODERATE 83A>T Asn28Ile
M0150246 KAPDECLB_00015 16859 6 Gut 0.86 protein_coding missense_variant MODERATE 95T>G Val32Gly
M0150247 KAPDECLB_00015 16862 6 Gut 0.86 protein_coding missense_variant MODERATE 98G>A Gly33Asp
M0150248 KAPDECLB_00015 16893 6 Gut 0.86 protein_coding synonymous_variant LOW 129C>T Ile43Ile
M0150249 KAPDECLB_00015 16894 6 Gut 0.86 protein_coding missense_variant MODERATE 130A>C Lys44Gln
M0150250 KAPDECLB_00016 16931 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -143A>G None
M0150251 KAPDECLB_00016 16932 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -142C>T None
M0150252 KAPDECLB_00016 17051 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -23C>G None
M0150253 KAPDECLB_00016 17265 6 Gut 0.86 protein_coding synonymous_variant LOW 192A>G Thr64Thr
M0150254 KAPDECLB_00016 17295 6 Gut 0.86 protein_coding synonymous_variant LOW 222G>A Lys74Lys
M0150255 KAPDECLB_00016 17421 6 Gut 0.86 protein_coding synonymous_variant LOW 348T>C Ile116Ile
M0150256 KAPDECLB_00016 17439 6 Gut 0.86 protein_coding synonymous_variant LOW 366C>T Val122Val
M0150257 KAPDECLB_00016 17484 6 Gut 0.86 protein_coding synonymous_variant LOW 411C>T Ala137Ala
M0150258 KAPDECLB_00016 17571 6 Gut 0.86 protein_coding synonymous_variant LOW 498G>A Ala166Ala
M0150259 KAPDECLB_00016 17584 6 Gut 0.86 protein_coding missense_variant MODERATE 511T>G Ser171Ala
M0150260 KAPDECLB_00016 17646 6 Gut 0.86 protein_coding synonymous_variant LOW 573G>T Ala191Ala
M0150261 KAPDECLB_00016 17727 6 Gut 0.86 protein_coding synonymous_variant LOW 654C>T Ala218Ala
M0150262 KAPDECLB_00017 17896 6 Gut 0.86 protein_coding synonymous_variant LOW 21C>T Phe7Phe
M0150263 KAPDECLB_00017 17906 6 Gut 0.86 protein_coding synonymous_variant LOW 31T>C Leu11Leu
M0150264 KAPDECLB_00017 17908 6 Gut 0.86 protein_coding synonymous_variant LOW 33G>A Leu11Leu
M0150265 KAPDECLB_00017 17987 6 Gut 0.86 protein_coding missense_variant MODERATE 112C>T Leu38Phe
M0150266 KAPDECLB_00017 17993 6 Gut 0.86 protein_coding synonymous_variant LOW 118C>T Leu40Leu
M0150267 KAPDECLB_00017 18041 6 Gut 0.86 protein_coding synonymous_variant LOW 166T>C Leu56Leu
M0150268 KAPDECLB_00017 18142 6 Gut 0.86 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0150269 KAPDECLB_00017 18181 6 Gut 0.86 protein_coding synonymous_variant LOW 306A>G Lys102Lys
M0150270 KAPDECLB_00018 18257 6 Gut 0.86 protein_coding synonymous_variant LOW 75A>C Val25Val
M0150271 KAPDECLB_00018 18299 6 Gut 0.86 protein_coding missense_variant MODERATE 117G>T Glu39Asp
M0150272 KAPDECLB_00018 18305 6 Gut 0.86 protein_coding synonymous_variant LOW 123T>C Ile41Ile
M0150273 KAPDECLB_00018 18332 6 Gut 0.86 protein_coding synonymous_variant LOW 150A>G Gly50Gly
M0150274 KAPDECLB_00018 18483 6 Gut 0.86 protein_coding synonymous_variant LOW 301C>T Leu101Leu
M0150275 KAPDECLB_00018 18587 6 Gut 0.86 protein_coding synonymous_variant LOW 405T>A Ile135Ile
M0150276 KAPDECLB_00018 18611 6 Gut 0.86 protein_coding synonymous_variant LOW 429A>G Glu143Glu
M0150277 KAPDECLB_00018 18674 6 Gut 0.86 protein_coding synonymous_variant LOW 492T>C Ala164Ala
M0150278 KAPDECLB_00018 18930 6 Gut 0.86 protein_coding missense_variant MODERATE 748T>G Ser250Ala
M0150279 KAPDECLB_00018 19024 6 Gut 0.86 protein_coding missense_variant MODERATE 842A>C His281Pro
M0150280 KAPDECLB_00018 19034 6 Gut 0.86 protein_coding synonymous_variant LOW 852C>T Pro284Pro
M0150281 KAPDECLB_00018 19248 6 Gut 0.86 protein_coding synonymous_variant LOW 1066C>T Leu356Leu
M0150282 KAPDECLB_00018 19334 6 Gut 0.86 protein_coding synonymous_variant LOW 1152G>A Thr384Thr
M0150283 KAPDECLB_00018 19371 6 Gut 0.86 protein_coding synonymous_variant LOW 1189C>T Leu397Leu
M0150284 KAPDECLB_00018 19451 6 Gut 0.86 protein_coding synonymous_variant LOW 1269A>C Val423Val
M0150285 KAPDECLB_00018 19479 6 Gut 0.86 protein_coding missense_variant MODERATE 1297C>T Pro433Ser
M0150286 KAPDECLB_00018 19649 6 Gut 0.86 protein_coding synonymous_variant LOW 1467T>C Asp489Asp
M0150287 KAPDECLB_00018 19727 6 Gut 0.86 protein_coding synonymous_variant LOW 1545A>G Ser515Ser
M0150288 KAPDECLB_00018 19742 6 Gut 0.86 protein_coding synonymous_variant LOW 1560C>T Asn520Asn
M0150289 KAPDECLB_00018 19835 6 Gut 0.86 protein_coding synonymous_variant LOW 1653T>C Ser551Ser
M0150290 KAPDECLB_00018 19919 6 Gut 0.86 protein_coding synonymous_variant LOW 1737T>C Arg579Arg
M0150291 KAPDECLB_00018 20069 6 Gut 0.86 protein_coding synonymous_variant LOW 1887C>T Asp629Asp
M0150292 KAPDECLB_00018 20225 6 Gut 0.86 protein_coding synonymous_variant LOW 2043T>C Asn681Asn
M0150293 KAPDECLB_00018 20249 6 Gut 0.86 protein_coding synonymous_variant LOW 2067G>A Glu689Glu
M0150294 KAPDECLB_00018 20288 6 Gut 0.86 protein_coding synonymous_variant LOW 2106C>T Gly702Gly
M0150295 KAPDECLB_00018 20369 6 Gut 0.86 protein_coding synonymous_variant LOW 2187G>A Glu729Glu
M0150296 KAPDECLB_00018 20504 6 Gut 0.86 protein_coding synonymous_variant LOW 2322A>G Val774Val
M0150297 KAPDECLB_00019 20661 6 Gut 0.86 protein_coding missense_variant MODERATE 77T>C Leu26Ser
M0150298 KAPDECLB_00019 20753 6 Gut 0.86 protein_coding missense_variant MODERATE 169A>C Lys57Gln
M0150299 KAPDECLB_00019 20821 6 Gut 0.86 protein_coding synonymous_variant LOW 237A>G Leu79Leu
M0150300 KAPDECLB_00019 20926 6 Gut 0.86 protein_coding synonymous_variant LOW 342G>A Lys114Lys
M0150301 KAPDECLB_00019 20959 6 Gut 0.86 protein_coding synonymous_variant LOW 375A>G Ala125Ala
M0150302 KAPDECLB_00019 20974 6 Gut 0.86 protein_coding synonymous_variant LOW 390G>A Arg130Arg
M0150303 KAPDECLB_00019 21001 6 Gut 0.86 protein_coding synonymous_variant LOW 417A>G Leu139Leu
M0150304 KAPDECLB_00019 21022 6 Gut 0.86 protein_coding synonymous_variant LOW 438C>T Tyr146Tyr
M0150305 KAPDECLB_00019 21187 6 Gut 0.86 protein_coding synonymous_variant LOW 603A>G Thr201Thr
M0150306 KAPDECLB_00019 21580 6 Gut 0.86 protein_coding missense_variant MODERATE 996C>G Ile332Met
M0150307 KAPDECLB_00019 21623 6 Gut 0.86 protein_coding synonymous_variant LOW 1039C>T Leu347Leu
M0150308 KAPDECLB_00019 21700 6 Gut 0.86 protein_coding synonymous_variant LOW 1116G>A Ser372Ser
M0150309 KAPDECLB_00019 21837 6 Gut 0.86 protein_coding missense_variant MODERATE 1253G>A Gly418Asp
M0150310 KAPDECLB_00019 21862 6 Gut 0.86 protein_coding synonymous_variant LOW 1278A>G Leu426Leu
M0150311 KAPDECLB_00019 21952 6 Gut 0.86 protein_coding synonymous_variant LOW 1368G>A Thr456Thr
M0150312 KAPDECLB_00019 22200 6 Gut 0.86 protein_coding missense_variant MODERATE 1616G>A Gly539Glu
M0150313 KAPDECLB_00019 22267 6 Gut 0.86 protein_coding synonymous_variant LOW 1683G>A Glu561Glu
M0150314 KAPDECLB_00019 22288 6 Gut 0.86 protein_coding synonymous_variant LOW 1704C>G Gly568Gly
M0150315 KAPDECLB_00019 22306 6 Gut 0.86 protein_coding synonymous_variant LOW 1722C>T Ser574Ser
M0150316 KAPDECLB_00019 22462 6 Gut 0.86 protein_coding synonymous_variant LOW 1878T>C Gly626Gly
M0150317 KAPDECLB_00019 22543 6 Gut 0.86 protein_coding synonymous_variant LOW 1959T>C Tyr653Tyr
M0150318 KAPDECLB_00019 22558 6 Gut 0.86 protein_coding synonymous_variant LOW 1974A>G Gln658Gln
M0150319 KAPDECLB_00019 22591 6 Gut 0.86 protein_coding synonymous_variant LOW 2007C>T Gly669Gly
M0150320 KAPDECLB_00019 22609 6 Gut 0.86 protein_coding synonymous_variant LOW 2025T>C Asp675Asp
M0150321 KAPDECLB_00019 22630 6 Gut 0.86 protein_coding synonymous_variant LOW 2046T>G Val682Val
M0150322 KAPDECLB_00019 22750 6 Gut 0.86 protein_coding synonymous_variant LOW 2166A>G Ser722Ser
M0150323 KAPDECLB_00019 22774 6 Gut 0.86 protein_coding synonymous_variant LOW 2190A>G Gly730Gly
M0150324 KAPDECLB_00019 22780 6 Gut 0.86 protein_coding synonymous_variant LOW 2196A>G Glu732Glu
M0150325 KAPDECLB_00019 22790 6 Gut 0.86 protein_coding missense_variant MODERATE 2206A>C Lys736Gln
M0150326 KAPDECLB_00019 22894 6 Gut 0.86 protein_coding synonymous_variant LOW 2310G>A Val770Val
M0150327 KAPDECLB_00019 22972 6 Gut 0.86 protein_coding missense_variant MODERATE 2388T>A Ser796Arg
M0150328 KAPDECLB_00019 22978 6 Gut 0.86 protein_coding synonymous_variant LOW 2394G>A Thr798Thr
M0150329 KAPDECLB_00019 22981 6 Gut 0.86 protein_coding synonymous_variant LOW 2397C>A Pro799Pro
M0150330 KAPDECLB_00019 22999 6 Gut 0.86 protein_coding synonymous_variant LOW 2415G>A Ser805Ser
M0150331 KAPDECLB_00019 23000 6 Gut 0.86 protein_coding missense_variant MODERATE 2416G>A Ala806Thr
M0150332 KAPDECLB_00019 23002 6 Gut 0.86 protein_coding synonymous_variant LOW 2418C>T Ala806Ala
M0150333 KAPDECLB_00019 23101 6 Gut 0.86 protein_coding synonymous_variant LOW 2517T>A Gly839Gly
M0150334 KAPDECLB_00019 23143 6 Gut 0.86 protein_coding synonymous_variant LOW 2559T>C Ser853Ser
M0150335 KAPDECLB_00020 23244 6 Gut 0.86 protein_coding synonymous_variant LOW 12A>G Leu4Leu
M0150336 KAPDECLB_00020 23293 6 Gut 0.86 protein_coding missense_variant MODERATE 61A>G Met21Val
M0150337 KAPDECLB_00020 23388 6 Gut 0.86 protein_coding synonymous_variant LOW 156A>G Thr52Thr
M0150338 KAPDECLB_00020 23688 6 Gut 0.86 protein_coding synonymous_variant LOW 456G>A Ala152Ala
M0150339 KAPDECLB_00020 23689 6 Gut 0.86 protein_coding missense_variant MODERATE 457C>A Leu153Met
M0150340 KAPDECLB_00020 23715 6 Gut 0.86 protein_coding synonymous_variant LOW 483C>T Gly161Gly
M0150341 KAPDECLB_00020 23777 6 Gut 0.86 protein_coding missense_variant MODERATE 545C>A Pro182Gln
M0150342 KAPDECLB_00020 23807 6 Gut 0.86 protein_coding missense_variant MODERATE 575C>A Thr192Lys
M0150343 KAPDECLB_00020 23818 6 Gut 0.86 protein_coding missense_variant MODERATE 586G>A Ala196Thr
M0150344 KAPDECLB_00020 23819 6 Gut 0.86 protein_coding missense_variant MODERATE 587C>T Ala196Val
M0150345 KAPDECLB_00021 23890 6 Gut 0.86 protein_coding missense_variant MODERATE 63A>T Lys21Asn
M0150346 KAPDECLB_00021 23893 6 Gut 0.86 protein_coding synonymous_variant LOW 66G>A Glu22Glu
M0150347 KAPDECLB_00021 24035 6 Gut 0.86 protein_coding synonymous_variant LOW 208T>C Leu70Leu
M0150348 KAPDECLB_00021 24050 6 Gut 0.86 protein_coding missense_variant MODERATE 223T>G Ser75Ala
M0150349 KAPDECLB_00022 24089 6 Gut 0.86 protein_coding synonymous_variant LOW 36C>T Thr12Thr
M0150350 KAPDECLB_00022 24108 6 Gut 0.86 protein_coding missense_variant MODERATE 55C>T His19Tyr
M0150351 KAPDECLB_00022 24122 6 Gut 0.86 protein_coding synonymous_variant LOW 69C>T Ile23Ile
M0150352 KAPDECLB_00022 24133 6 Gut 0.86 protein_coding missense_variant MODERATE 80T>C Val27Ala
M0150353 KAPDECLB_00022 24143 6 Gut 0.86 protein_coding synonymous_variant LOW 90A>T Ser30Ser
M0150354 KAPDECLB_00022 24194 6 Gut 0.86 protein_coding synonymous_variant LOW 141A>G Lys47Lys
M0150355 KAPDECLB_00022 24219 6 Gut 0.86 protein_coding missense_variant MODERATE 166A>G Ile56Val
M0150356 KAPDECLB_00022 24254 6 Gut 0.86 protein_coding synonymous_variant LOW 201G>A Gln67Gln
M0150357 KAPDECLB_00022 24296 6 Gut 0.86 protein_coding synonymous_variant LOW 243C>T Asp81Asp
M0150358 KAPDECLB_00022 24387 6 Gut 0.86 protein_coding missense_variant MODERATE 334G>A Val112Ile
M0150359 KAPDECLB_00022 24394 6 Gut 0.86 protein_coding missense_variant MODERATE 341T>C Leu114Pro
M0150360 KAPDECLB_00022 24419 6 Gut 0.86 protein_coding synonymous_variant LOW 366G>A Gln122Gln
M0150361 KAPDECLB_00022 24509 6 Gut 0.86 protein_coding missense_variant MODERATE 456A>G Ile152Met
M0150362 KAPDECLB_00022 24602 6 Gut 0.86 protein_coding synonymous_variant LOW 549G>A Lys183Lys
M0150363 KAPDECLB_00022 24653 6 Gut 0.86 protein_coding synonymous_variant LOW 600A>G Lys200Lys
M0150364 KAPDECLB_00023 24823 6 Gut 0.86 protein_coding synonymous_variant LOW 36C>T Ser12Ser
M0150365 KAPDECLB_00023 24892 6 Gut 0.86 protein_coding synonymous_variant LOW 105C>T Asp35Asp
M0150366 KAPDECLB_00023 24906 6 Gut 0.86 protein_coding missense_variant MODERATE 119G>C Ser40Thr
M0150367 KAPDECLB_00023 25051 6 Gut 0.86 protein_coding synonymous_variant LOW 264G>A Gly88Gly
M0150368 KAPDECLB_00023 25165 6 Gut 0.86 protein_coding synonymous_variant LOW 378C>T Asp126Asp
M0150369 KAPDECLB_00023 25180 6 Gut 0.86 protein_coding synonymous_variant LOW 393T>C Tyr131Tyr
M0150370 KAPDECLB_00023 25294 6 Gut 0.86 protein_coding synonymous_variant LOW 507T>C Ile169Ile
M0150371 KAPDECLB_00023 25339 6 Gut 0.86 protein_coding synonymous_variant LOW 552T>C Tyr184Tyr
M0150372 KAPDECLB_00023 25423 6 Gut 0.86 protein_coding synonymous_variant LOW 636C>T Tyr212Tyr
M0150373 KAPDECLB_00023 25430 6 Gut 0.86 protein_coding missense_variant MODERATE 643A>G Thr215Ala
M0150374 KAPDECLB_00024 25586 7 Gut 1.00 protein_coding synonymous_variant LOW 27C>T Gly9Gly
M0150375 KAPDECLB_00024 25619 7 Gut 1.00 protein_coding synonymous_variant LOW 60G>A Thr20Thr
M0150376 KAPDECLB_00024 25679 7 Gut 1.00 protein_coding missense_variant MODERATE 120T>A His40Gln
M0150377 KAPDECLB_00024 25778 7 Gut 1.00 protein_coding synonymous_variant LOW 219G>A Leu73Leu
M0150378 KAPDECLB_00024 25793 7 Gut 1.00 protein_coding synonymous_variant LOW 234A>G Gln78Gln
M0150379 KAPDECLB_00024 25850 7 Gut 1.00 protein_coding synonymous_variant LOW 291C>A Val97Val
M0150380 KAPDECLB_00024 25910 7 Gut 1.00 protein_coding synonymous_variant LOW 351A>G Pro117Pro
M0150381 KAPDECLB_00024 25932 7 Gut 1.00 protein_coding missense_variant MODERATE 373A>C Lys125Gln
M0150382 KAPDECLB_00024 25958 7 Gut 1.00 protein_coding synonymous_variant LOW 399C>T Leu133Leu
M0150383 KAPDECLB_00025 26035 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -29A>C None
M0150384 KAPDECLB_00025 26039 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -25G>A None
M0150385 KAPDECLB_00025 26049 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -15G>A None
M0150386 KAPDECLB_00025 26096 7 Gut 1.00 protein_coding synonymous_variant LOW 33C>A Leu11Leu
M0150387 KAPDECLB_00025 26103 7 Gut 1.00 protein_coding missense_variant MODERATE 40G>A Val14Ile
M0150388 KAPDECLB_00025 26111 7 Gut 1.00 protein_coding synonymous_variant LOW 48A>C Ala16Ala
M0150389 KAPDECLB_00025 26115 7 Gut 1.00 protein_coding missense_variant MODERATE 52A>T Met18Leu
M0150390 KAPDECLB_00025 26117 7 Gut 1.00 protein_coding missense_variant MODERATE 54G>A Met18Ile
M0150391 KAPDECLB_00025 26122 7 Gut 1.00 protein_coding missense_variant MODERATE 59G>A Cys20Tyr
M0150392 KAPDECLB_00025 26148 7 Gut 1.00 protein_coding synonymous_variant LOW 85T>C Leu29Leu
M0150393 KAPDECLB_00025 26153 7 Gut 1.00 protein_coding synonymous_variant LOW 90T>C Thr30Thr
M0150394 KAPDECLB_00025 26166 7 Gut 1.00 protein_coding synonymous_variant LOW 103C>T Leu35Leu
M0150395 KAPDECLB_00025 26182 7 Gut 1.00 protein_coding missense_variant MODERATE 119C>T Ala40Val
M0150396 KAPDECLB_00025 26186 7 Gut 1.00 protein_coding synonymous_variant LOW 123T>G Ala41Ala
M0150397 KAPDECLB_00026 26269 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -16G>A None
M0150398 KAPDECLB_00026 26395 7 Gut 1.00 protein_coding synonymous_variant LOW 111G>A Leu37Leu
M0150399 KAPDECLB_00026 26451 7 Gut 1.00 protein_coding missense_variant MODERATE 167G>A Arg56His
M0150400 KAPDECLB_00026 26473 7 Gut 1.00 protein_coding synonymous_variant LOW 189A>G Ala63Ala
M0150401 KAPDECLB_00026 26599 7 Gut 1.00 protein_coding synonymous_variant LOW 315C>T Leu105Leu
M0150402 KAPDECLB_00026 26623 7 Gut 1.00 protein_coding synonymous_variant LOW 339A>G Val113Val
M0150403 KAPDECLB_00026 26734 7 Gut 1.00 protein_coding synonymous_variant LOW 450C>T Ile150Ile
M0150404 KAPDECLB_00027 26818 7 Gut 1.00 protein_coding missense_variant MODERATE 46G>A Val16Ile
M0150405 KAPDECLB_00027 26984 7 Gut 1.00 protein_coding missense_variant MODERATE 212T>C Val71Ala
M0150406 KAPDECLB_00027 27009 7 Gut 1.00 protein_coding synonymous_variant LOW 237G>A Gly79Gly
M0150407 KAPDECLB_00027 27147 7 Gut 1.00 protein_coding missense_variant MODERATE 375G>T Lys125Asn
M0150408 KAPDECLB_00027 27282 7 Gut 1.00 protein_coding synonymous_variant LOW 510T>C Ala170Ala
M0150409 KAPDECLB_00027 27312 7 Gut 1.00 protein_coding synonymous_variant LOW 540G>A Gly180Gly
M0150410 KAPDECLB_00027 27567 3 Gut 0.43 protein_coding synonymous_variant LOW 795C>A Arg265Arg
M0150411 KAPDECLB_00027 27576 7 Gut 1.00 protein_coding missense_variant MODERATE 804T>G Asp268Glu
M0150412 KAPDECLB_00027 27615 7 Gut 1.00 protein_coding synonymous_variant LOW 843T>C Arg281Arg
M0150413 KAPDECLB_00027 27678 7 Gut 1.00 protein_coding synonymous_variant LOW 906T>C Asn302Asn
M0150414 KAPDECLB_00027 27753 7 Gut 1.00 protein_coding synonymous_variant LOW 981A>C Ala327Ala
M0150415 KAPDECLB_00027 27915 7 Gut 1.00 protein_coding synonymous_variant LOW 1143A>G Ala381Ala
M0150416 KAPDECLB_00027 27999 7 Gut 1.00 protein_coding synonymous_variant LOW 1227A>C Gly409Gly
M0150417 KAPDECLB_00027 28122 7 Gut 1.00 protein_coding synonymous_variant LOW 1350G>A Gln450Gln
M0150418 KAPDECLB_00027 28152 7 Gut 1.00 protein_coding synonymous_variant LOW 1380G>C Arg460Arg
M0150419 KAPDECLB_00028 28721 7 Gut 1.00 protein_coding missense_variant MODERATE 70G>T Ala24Ser
M0150420 KAPDECLB_00028 28767 7 Gut 1.00 protein_coding missense_variant MODERATE 116C>T Thr39Ile
M0150421 KAPDECLB_00028 28811 7 Gut 1.00 protein_coding missense_variant MODERATE 160T>G Ser54Ala
M0150422 KAPDECLB_00028 28928 7 Gut 1.00 protein_coding missense_variant MODERATE 277A>G Ile93Val
M0150423 KAPDECLB_00028 29371 6 Gut 0.86 protein_coding synonymous_variant LOW 720G>A Glu240Glu
M0150424 KAPDECLB_00028 29467 6 Gut 0.86 protein_coding synonymous_variant LOW 816G>A Glu272Glu
M0150425 KAPDECLB_00028 29485 6 Gut 0.86 protein_coding synonymous_variant LOW 834T>C Val278Val
M0150426 KAPDECLB_00028 29533 6 Gut 0.86 protein_coding synonymous_variant LOW 882T>C Leu294Leu
M0150427 KAPDECLB_00028 29592 6 Gut 0.86 protein_coding missense_variant MODERATE 941A>G Asn314Ser
M0150428 KAPDECLB_00028 29647 6 Gut 0.86 protein_coding synonymous_variant LOW 996A>G Thr332Thr
M0150429 KAPDECLB_00028 29669 7 Gut 1.00 protein_coding missense_variant MODERATE 1018A>C Lys340Gln
M0150430 KAPDECLB_00028 29673 6 Gut 0.86 protein_coding missense_variant MODERATE 1022C>T Thr341Ile
M0150431 KAPDECLB_00028 29685 6 Gut 0.86 protein_coding missense_variant MODERATE 1034C>T Thr345Ile
M0150432 KAPDECLB_00028 29717 6 Gut 0.86 protein_coding missense_variant MODERATE 1066G>A Glu356Lys
M0150433 KAPDECLB_00028 29795 6 Gut 0.86 protein_coding missense_variant MODERATE 1144A>C Ile382Leu
M0150434 KAPDECLB_00028 29797 6 Gut 0.86 protein_coding synonymous_variant LOW 1146C>A Ile382Ile
M0150435 KAPDECLB_00028 29800 6 Gut 0.86 protein_coding synonymous_variant LOW 1149C>A Thr383Thr
M0150436 KAPDECLB_00028 29845 6 Gut 0.86 protein_coding synonymous_variant LOW 1194G>A Gln398Gln
M0150437 KAPDECLB_00028 29860 6 Gut 0.86 protein_coding synonymous_variant LOW 1209G>A Gly403Gly
M0150438 KAPDECLB_00028 29971 7 Gut 1.00 protein_coding synonymous_variant LOW 1320C>T Asn440Asn
M0150439 KAPDECLB_00028 30085 6 Gut 0.86 protein_coding synonymous_variant LOW 1434T>C Asn478Asn
M0150440 KAPDECLB_00028 30097 7 Gut 1.00 protein_coding synonymous_variant LOW 1446C>T Val482Val
M0150441 KAPDECLB_00029 30912 7 Gut 1.00 protein_coding missense_variant MODERATE 69A>C Glu23Asp
M0150442 KAPDECLB_00029 31009 7 Gut 1.00 protein_coding missense_variant MODERATE 166G>A Glu56Lys
M0150443 KAPDECLB_00029 31041 7 Gut 1.00 protein_coding synonymous_variant LOW 198T>C Ala66Ala
M0150444 KAPDECLB_00029 31072 7 Gut 1.00 protein_coding missense_variant MODERATE 229G>T Ala77Ser
M0150445 KAPDECLB_00029 31080 7 Gut 1.00 protein_coding synonymous_variant LOW 237A>G Leu79Leu
M0150446 KAPDECLB_00029 31104 7 Gut 1.00 protein_coding synonymous_variant LOW 261T>C Ala87Ala
M0150447 KAPDECLB_00029 31116 7 Gut 1.00 protein_coding splice_region_variant&stop_retained_variant LOW 273A>G Ter91Ter
M0150448 KAPDECLB_00030 31295 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -67C>T None
M0150449 KAPDECLB_00030 31307 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -55A>G None
M0150450 KAPDECLB_00030 31309 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -53C>T None
M0150451 KAPDECLB_00030 31357 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -5T>C None
M0150452 KAPDECLB_00030 31601 7 Gut 1.00 protein_coding synonymous_variant LOW 240T>C Asn80Asn
M0150453 KAPDECLB_00031 31808 7 Gut 1.00 protein_coding synonymous_variant LOW 90C>T Val30Val
M0150454 KAPDECLB_00031 31910 7 Gut 1.00 protein_coding synonymous_variant LOW 192G>A Val64Val
M0150455 KAPDECLB_00031 32228 7 Gut 1.00 protein_coding synonymous_variant LOW 510C>T Asn170Asn
M0150456 KAPDECLB_00031 32279 7 Gut 1.00 protein_coding synonymous_variant LOW 561C>T Phe187Phe
M0150457 KAPDECLB_00031 32315 7 Gut 1.00 protein_coding synonymous_variant LOW 597T>C Gly199Gly
M0150458 KAPDECLB_00031 32408 7 Gut 1.00 protein_coding synonymous_variant LOW 690T>G Arg230Arg
M0150459 KAPDECLB_00031 32506 7 Gut 1.00 protein_coding missense_variant MODERATE 788C>T Thr263Ile
M0150460 KAPDECLB_00031 32774 7 Gut 1.00 protein_coding synonymous_variant LOW 1056C>T Gly352Gly
M0150461 KAPDECLB_00031 33218 7 Gut 1.00 protein_coding synonymous_variant LOW 1500G>A Pro500Pro
M0150462 KAPDECLB_00031 33347 7 Gut 1.00 protein_coding synonymous_variant LOW 1629T>A Ile543Ile
M0150463 KAPDECLB_00032 33469 7 Gut 1.00 protein_coding missense_variant MODERATE 54A>G Ile18Met
M0150464 KAPDECLB_00032 33493 7 Gut 1.00 protein_coding synonymous_variant LOW 78T>G Leu26Leu
M0150465 KAPDECLB_00032 33571 7 Gut 1.00 protein_coding synonymous_variant LOW 156C>T Ala52Ala
M0150466 KAPDECLB_00032 33600 7 Gut 1.00 protein_coding missense_variant MODERATE 185C>T Thr62Ile
M0150467 KAPDECLB_00032 33757 7 Gut 1.00 protein_coding missense_variant MODERATE 342C>A Ser114Arg
M0150468 KAPDECLB_00040 34091 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4728C>T None
M0150469 KAPDECLB_00040 34137 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4682T>C None
M0150470 KAPDECLB_00040 34252 5 Gut 0.71 protein_coding upstream_gene_variant MODIFIER -4567A>G None
M0150471 KAPDECLB_00033 34351 5 Gut 0.71 protein_coding missense_variant MODERATE 1291G>A Ala431Thr
M0150472 KAPDECLB_00033 34356 5 Gut 0.71 protein_coding missense_variant MODERATE 1286A>G Lys429Arg
M0150473 KAPDECLB_00033 34362 5 Gut 0.71 protein_coding missense_variant MODERATE 1280A>G Lys427Arg
M0150474 KAPDECLB_00033 34387 5 Gut 0.71 protein_coding missense_variant MODERATE 1255T>C Cys419Arg
M0150475 KAPDECLB_00033 34404 5 Gut 0.71 protein_coding missense_variant MODERATE 1238T>C Ile413Thr
M0150476 KAPDECLB_00033 34408 5 Gut 0.71 protein_coding missense_variant MODERATE 1234G>A Val412Ile
M0150477 KAPDECLB_00033 34421 5 Gut 0.71 protein_coding synonymous_variant LOW 1221T>C Tyr407Tyr
M0150478 KAPDECLB_00033 34424 5 Gut 0.71 protein_coding synonymous_variant LOW 1218A>G Glu406Glu
M0150479 KAPDECLB_00045 42243 5 Gut 0.71 protein_coding missense_variant MODERATE 1021G>T Ala341Ser
M0150480 KAPDECLB_00045 42253 5 Gut 0.71 protein_coding missense_variant MODERATE 1031C>T Ala344Val
M0150481 KAPDECLB_00045 42255 5 Gut 0.71 protein_coding missense_variant MODERATE 1033G>C Val345Leu
M0150482 KAPDECLB_00045 42260 5 Gut 0.71 protein_coding synonymous_variant LOW 1038T>A Gly346Gly
M0150483 KAPDECLB_00045 42284 7 Gut 1.00 protein_coding synonymous_variant LOW 1062C>T Cys354Cys
M0150484 KAPDECLB_00045 42398 7 Gut 1.00 protein_coding synonymous_variant LOW 1176A>G Leu392Leu
M0150485 KAPDECLB_00045 42417 7 Gut 1.00 protein_coding missense_variant MODERATE 1195A>G Thr399Ala
M0150486 KAPDECLB_00045 42419 7 Gut 1.00 protein_coding synonymous_variant LOW 1197T>C Thr399Thr
M0150487 KAPDECLB_00045 42443 7 Gut 1.00 protein_coding synonymous_variant LOW 1221G>A Lys407Lys
M0150488 KAPDECLB_00045 42444 7 Gut 1.00 protein_coding missense_variant MODERATE 1222G>A Asp408Asn
M0150489 KAPDECLB_00045 42470 7 Gut 1.00 protein_coding synonymous_variant LOW 1248G>A Ser416Ser
M0150490 KAPDECLB_00045 42515 7 Gut 1.00 protein_coding synonymous_variant LOW 1293C>A Ala431Ala
M0150491 KAPDECLB_00045 42563 7 Gut 1.00 protein_coding synonymous_variant LOW 1341C>T Asn447Asn
M0150492 KAPDECLB_00045 42614 7 Gut 1.00 protein_coding synonymous_variant LOW 1392A>G Glu464Glu
M0150493 KAPDECLB_00038 42774 7 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4829A>T None
M0150494 KAPDECLB_00038 42869 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -4924C>T None
M0150495 KAPDECLB_00038 42905 6 Gut 0.86 protein_coding upstream_gene_variant MODIFIER -4960G>T None
M0150496 KAPDECLB_00039 43103 5 Gut 0.71 protein_coding upstream_gene_variant MODIFIER -4339T>C None
M0150497 KAPDECLB_00046 43249 5 Gut 0.71 protein_coding synonymous_variant LOW 24G>A Leu8Leu
M0150498 KAPDECLB_00047 43508 5 Gut 0.71 protein_coding missense_variant MODERATE 22A>G Thr8Ala
M0150499 KAPDECLB_00047 43806 5 Gut 0.71 protein_coding missense_variant MODERATE 320T>C Leu107Ser
M0150500 KAPDECLB_00047 43971 5 Gut 0.71 protein_coding missense_variant MODERATE 485C>T Thr162Ile
M0150501 KAPDECLB_00047 44179 5 Gut 0.71 protein_coding synonymous_variant LOW 693C>T Ser231Ser
M0150502 KAPDECLB_00047 44275 5 Gut 0.71 protein_coding synonymous_variant LOW 789A>G Glu263Glu
M0150503 KAPDECLB_00047 44330 5 Gut 0.71 protein_coding missense_variant MODERATE 844G>T Ala282Ser
M0150504 KAPDECLB_00047 44498 5 Gut 0.71 protein_coding missense_variant MODERATE 1012A>G Lys338Glu
M0150505 KAPDECLB_00047 44635 5 Gut 0.71 protein_coding synonymous_variant LOW 1149C>T Asp383Asp
M0150506 KAPDECLB_00048 45211 5 Gut 0.71 protein_coding missense_variant MODERATE 388T>A Phe130Ile
M0150507 KAPDECLB_00048 45276 5 Gut 0.71 protein_coding synonymous_variant LOW 453T>C Ser151Ser
M0150508 KAPDECLB_00048 45330 5 Gut 0.71 protein_coding synonymous_variant LOW 507C>T Phe169Phe
M0150509 KAPDECLB_00048 45744 4 Gut 0.57 protein_coding synonymous_variant LOW 921T>C Tyr307Tyr
M0150510 KAPDECLB_00048 46027 4 Gut 0.57 protein_coding synonymous_variant LOW 1204C>T Leu402Leu
M0150511 KAPDECLB_00048 46104 4 Gut 0.57 protein_coding synonymous_variant LOW 1281T>A Gly427Gly
M0150512 KAPDECLB_00048 46210 4 Gut 0.57 protein_coding missense_variant MODERATE 1387C>A Leu463Ile
M0150513 KAPDECLB_00048 46335 4 Gut 0.57 protein_coding synonymous_variant LOW 1512T>C Asp504Asp
M0150514 KAPDECLB_00048 46445 4 Gut 0.57 protein_coding missense_variant MODERATE 1622A>G Lys541Arg
M0150515 KAPDECLB_00048 46902 4 Gut 0.57 protein_coding synonymous_variant LOW 2079T>C Tyr693Tyr
M0150516 KAPDECLB_00049 46954 4 Gut 0.57 protein_coding missense_variant MODERATE 29C>T Thr10Met
M0150517 KAPDECLB_00049 47126 4 Gut 0.57 protein_coding missense_variant MODERATE 201G>A Met67Ile
M0150518 KAPDECLB_00049 47222 4 Gut 0.57 protein_coding synonymous_variant LOW 297T>C Val99Val
M0150519 KAPDECLB_00049 47255 4 Gut 0.57 protein_coding synonymous_variant LOW 330G>A Leu110Leu
M0150520 KAPDECLB_00009 13604 3 Gut 0.43 protein_coding missense_variant MODERATE 3742G>A Ala1248Thr
M0150521 KAPDECLB_00009 13660 3 Gut 0.43 protein_coding synonymous_variant LOW 3798A>G Val1266Val
M0150522 KAPDECLB_00009 13676 3 Gut 0.43 protein_coding missense_variant MODERATE 3814A>C Lys1272Gln
M0150523 KAPDECLB_00009 13720 3 Gut 0.43 protein_coding synonymous_variant LOW 3858C>T Ser1286Ser
M0150524 KAPDECLB_00009 13764 3 Gut 0.43 protein_coding missense_variant MODERATE 3902A>G Lys1301Arg
M0150525 KAPDECLB_00010 13958 3 Gut 0.43 protein_coding synonymous_variant LOW 117A>G Leu39Leu
M0150526 KAPDECLB_00010 13961 3 Gut 0.43 protein_coding synonymous_variant LOW 120G>A Lys40Lys
M0150527 KAPDECLB_00010 13970 3 Gut 0.43 protein_coding synonymous_variant LOW 129A>T Arg43Arg
M0150528 KAPDECLB_00010 14018 3 Gut 0.43 protein_coding synonymous_variant LOW 177G>A Gln59Gln
M0150529 KAPDECLB_00010 14039 3 Gut 0.43 protein_coding synonymous_variant LOW 198C>T Ile66Ile
M0150530 KAPDECLB_00010 14048 3 Gut 0.43 protein_coding synonymous_variant LOW 207C>T Asn69Asn
M0150531 KAPDECLB_00010 14058 3 Gut 0.43 protein_coding synonymous_variant LOW 217C>T Leu73Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
KAPDECLB_00009 VFG002164 AS 96.2 0 1 1305 1.0 1 Adherence aggregation substance PrgB/Asc10 experiment
KAPDECLB_00009 VFG002164 AS 96.2 0 1 1305 1.0 1 Adherence aggregation substance PrgB/Asc10 prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
KAPDECLB_00056 ARO:3002597 100 0 1 479 1.0000 1.0000 aminoglycoside antibiotic aminoglycoside bifunctional resistance protein antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
KAPDECLB_00047 AAO83138.1|GT2 100 0 1 446 1 1
KAPDECLB_00054 CCO10203.2|GH1 86.9 1.56e-244 1 390 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
KAPDECLB_00027 3.A.7.19.1 99.5 0 1 609 1.0000 1.0856 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
KAPDECLB_00028 3.A.7.19.1 98.6 0 1 719 1.0000 1.2816 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
KAPDECLB_00031 3.A.7.19.1 99.6 0 1 561 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
KAPDECLB_00033 3.A.7.19.1 100 4.4e-263 1 445 1.0000 0.7932 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family