Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3079
  Reference Plasmid   MET0041_bin.7__k81_17471
  Reference Plasmid Size   24437
  Reference Plasmid GC Content   0.36
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0071798 GJLFPKJH_00013 17505 6 Skin 0.43 protein_coding missense_variant MODERATE 244A>G Ser82Gly
M0071799 GJLFPKJH_00013 17689 6 Skin 0.43 protein_coding synonymous_variant LOW 60T>C Asp20Asp
M0071800 GJLFPKJH_00013 17695 6 Skin 0.43 protein_coding synonymous_variant LOW 54C>T Phe18Phe
M0071801 GJLFPKJH_00013 17704 6 Skin 0.43 protein_coding synonymous_variant LOW 45G>A Glu15Glu
M0071802 GJLFPKJH_00013 17706 6 Skin 0.43 protein_coding missense_variant MODERATE 43G>A Glu15Lys
M0071803 GJLFPKJH_00013 17716 6 Skin 0.43 protein_coding synonymous_variant LOW 33A>C Leu11Leu
M0071804 GJLFPKJH_00013 17728 6 Skin 0.43 protein_coding synonymous_variant LOW 21G>A Val7Val
M0071805 GJLFPKJH_00013 17736 6 Skin 0.43 protein_coding missense_variant MODERATE 13G>A Asp5Asn
M0071806 GJLFPKJH_00009 17749 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -2720C>G None
M0071807 GJLFPKJH_00009 17770 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -2741T>A None
M0071808 GJLFPKJH_00014 17919 3 Skin 0.21 protein_coding missense_variant MODERATE 1112G>A Ser371Asn
M0071809 GJLFPKJH_00014 18059 6 Skin 0.43 protein_coding synonymous_variant LOW 972T>C Asp324Asp
M0071810 GJLFPKJH_00014 18093 3 Skin 0.21 protein_coding missense_variant MODERATE 938G>A Ser313Asn
M0071811 GJLFPKJH_00014 18227 3 Skin 0.21 protein_coding synonymous_variant LOW 804A>G Ala268Ala
M0071812 GJLFPKJH_00014 18254 3 Skin 0.21 protein_coding synonymous_variant LOW 777T>G Thr259Thr
M0071813 GJLFPKJH_00014 18266 6 Skin 0.43 protein_coding synonymous_variant LOW 765A>G Lys255Lys
M0071814 GJLFPKJH_00014 18467 3 Skin 0.21 protein_coding synonymous_variant LOW 564G>A Leu188Leu
M0071815 GJLFPKJH_00014 18678 3 Skin 0.21 protein_coding missense_variant MODERATE 353A>T Gln118Leu
M0071816 GJLFPKJH_00014 18683 6 Skin 0.43 protein_coding synonymous_variant LOW 348C>T Arg116Arg
M0071817 GJLFPKJH_00014 18785 3 Skin 0.21 protein_coding synonymous_variant LOW 246C>T Thr82Thr
M0071818 GJLFPKJH_00014 18845 6 Skin 0.43 protein_coding synonymous_variant LOW 186A>T Ala62Ala
M0071819 GJLFPKJH_00014 18881 3 Skin 0.21 protein_coding synonymous_variant LOW 150C>T Ile50Ile
M0071820 GJLFPKJH_00014 18911 6 Skin 0.43 protein_coding synonymous_variant LOW 120G>A Glu40Glu
M0071821 GJLFPKJH_00009 19055 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4026A>G None
M0071822 GJLFPKJH_00009 19076 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4047T>C None
M0071823 GJLFPKJH_00009 19121 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4092G>A None
M0071824 GJLFPKJH_00009 19135 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4106T>C None
M0071825 GJLFPKJH_00015 19223 6 Skin 0.43 protein_coding missense_variant MODERATE 53A>G Lys18Arg
M0071826 GJLFPKJH_00015 19386 3 Skin 0.21 protein_coding synonymous_variant LOW 216G>A Leu72Leu
M0071827 GJLFPKJH_00015 19395 6 Skin 0.43 protein_coding synonymous_variant LOW 225C>T Asp75Asp
M0071828 GJLFPKJH_00015 19473 6 Skin 0.43 protein_coding synonymous_variant LOW 303G>A Val101Val
M0071829 GJLFPKJH_00015 19476 6 Skin 0.43 protein_coding synonymous_variant LOW 306A>T Ala102Ala
M0071830 GJLFPKJH_00015 19509 6 Skin 0.43 protein_coding synonymous_variant LOW 339C>T Thr113Thr
M0071831 GJLFPKJH_00015 19587 6 Skin 0.43 protein_coding synonymous_variant LOW 417C>T Asp139Asp
M0071832 GJLFPKJH_00015 19596 6 Skin 0.43 protein_coding synonymous_variant LOW 426C>T Arg142Arg
M0071833 GJLFPKJH_00015 19599 6 Skin 0.43 protein_coding synonymous_variant LOW 429A>T Val143Val
M0071834 GJLFPKJH_00015 19602 6 Skin 0.43 protein_coding synonymous_variant LOW 432C>T Ser144Ser
M0071835 GJLFPKJH_00015 19629 6 Skin 0.43 protein_coding synonymous_variant LOW 459C>T Arg153Arg
M0071836 GJLFPKJH_00015 19683 6 Skin 0.43 protein_coding synonymous_variant LOW 513C>T Leu171Leu
M0071837 GJLFPKJH_00015 19732 3 Skin 0.21 protein_coding missense_variant MODERATE 562C>T Pro188Ser
M0071838 GJLFPKJH_00015 19756 3 Skin 0.21 protein_coding missense_variant MODERATE 586G>A Val196Ile
M0071839 GJLFPKJH_00015 19845 6 Skin 0.43 protein_coding synonymous_variant LOW 675T>C Val225Val
M0071840 GJLFPKJH_00015 19881 3 Skin 0.21 protein_coding synonymous_variant LOW 711G>A Ala237Ala
M0071841 GJLFPKJH_00009 20003 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4974C>T None
M0071842 GJLFPKJH_00009 20026 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4997A>T None
M0071843 GJLFPKJH_00016 20037 6 Skin 0.43 protein_coding synonymous_variant LOW 2424T>C Asp808Asp
M0071844 GJLFPKJH_00016 20043 7 Skin 0.50 protein_coding synonymous_variant LOW 2418A>C Ala806Ala
M0071845 GJLFPKJH_00016 20057 3 Skin 0.21 protein_coding missense_variant MODERATE 2404G>A Val802Ile
M0071846 GJLFPKJH_00016 20058 4 Skin 0.29 protein_coding synonymous_variant LOW 2403C>T Tyr801Tyr
M0071847 GJLFPKJH_00016 20151 3 Skin 0.21 protein_coding synonymous_variant LOW 2310T>C Gly770Gly
M0071848 GJLFPKJH_00016 20157 4 Skin 0.29 protein_coding synonymous_variant LOW 2304T>C Ser768Ser
M0071849 GJLFPKJH_00016 20169 3 Skin 0.21 protein_coding synonymous_variant LOW 2292G>A Leu764Leu
M0071850 GJLFPKJH_00016 20172 3 Skin 0.21 protein_coding synonymous_variant LOW 2289C>A Arg763Arg
M0071851 GJLFPKJH_00016 20202 4 Skin 0.29 protein_coding synonymous_variant LOW 2259A>G Ser753Ser
M0071852 GJLFPKJH_00016 20211 4 Skin 0.29 protein_coding synonymous_variant LOW 2250C>T Ala750Ala
M0071853 GJLFPKJH_00016 20223 4 Skin 0.29 protein_coding synonymous_variant LOW 2238C>T Tyr746Tyr
M0071854 GJLFPKJH_00016 20232 4 Skin 0.29 protein_coding synonymous_variant LOW 2229G>C Thr743Thr
M0071855 GJLFPKJH_00016 20436 3 Skin 0.21 protein_coding synonymous_variant LOW 2025G>A Leu675Leu
M0071856 GJLFPKJH_00016 20454 4 Skin 0.29 protein_coding synonymous_variant LOW 2007T>C Asn669Asn
M0071857 GJLFPKJH_00016 20472 3 Skin 0.21 protein_coding synonymous_variant LOW 1989G>A Pro663Pro
M0071858 GJLFPKJH_00016 20571 6 Skin 0.43 protein_coding synonymous_variant LOW 1890T>C Ile630Ile
M0071859 GJLFPKJH_00016 20577 6 Skin 0.43 protein_coding synonymous_variant LOW 1884A>G Leu628Leu
M0071860 GJLFPKJH_00016 20667 6 Skin 0.43 protein_coding synonymous_variant LOW 1794C>T Phe598Phe
M0071861 GJLFPKJH_00016 20721 7 Skin 0.50 protein_coding synonymous_variant LOW 1740C>A Ser580Ser
M0071862 GJLFPKJH_00016 20789 5 Skin 0.36 protein_coding synonymous_variant LOW 1672T>C Leu558Leu
M0071863 GJLFPKJH_00016 20793 7 Skin 0.50 protein_coding synonymous_variant LOW 1668A>G Gln556Gln
M0071864 GJLFPKJH_00016 20852 7 Skin 0.50 protein_coding missense_variant MODERATE 1609A>G Ser537Gly
M0071865 GJLFPKJH_00016 20865 7 Skin 0.50 protein_coding synonymous_variant LOW 1596A>G Val532Val
M0071866 GJLFPKJH_00016 20892 4 Skin 0.29 protein_coding synonymous_variant LOW 1569C>T Thr523Thr
M0071867 GJLFPKJH_00016 20952 3 Skin 0.21 protein_coding synonymous_variant LOW 1509T>C Val503Val
M0071868 GJLFPKJH_00016 21042 3 Skin 0.21 protein_coding synonymous_variant LOW 1419T>G Val473Val
M0071869 GJLFPKJH_00016 21045 3 Skin 0.21 protein_coding synonymous_variant LOW 1416A>T Thr472Thr
M0071870 GJLFPKJH_00016 21063 4 Skin 0.29 protein_coding synonymous_variant LOW 1398A>G Glu466Glu
M0071871 GJLFPKJH_00016 21072 7 Skin 0.50 protein_coding synonymous_variant LOW 1389T>G Thr463Thr
M0071872 GJLFPKJH_00016 21156 4 Skin 0.29 protein_coding synonymous_variant LOW 1305C>T Ser435Ser
M0071873 GJLFPKJH_00016 21165 7 Skin 0.50 protein_coding synonymous_variant LOW 1296T>A Pro432Pro
M0071874 GJLFPKJH_00016 21174 7 Skin 0.50 protein_coding synonymous_variant LOW 1287A>G Val429Val
M0071875 GJLFPKJH_00016 21204 7 Skin 0.50 protein_coding synonymous_variant LOW 1257A>G Ala419Ala
M0071876 GJLFPKJH_00016 21237 4 Skin 0.29 protein_coding synonymous_variant LOW 1224T>C Thr408Thr
M0071877 GJLFPKJH_00016 21369 6 Skin 0.43 protein_coding synonymous_variant LOW 1092G>T Arg364Arg
M0071878 GJLFPKJH_00016 21384 6 Skin 0.43 protein_coding synonymous_variant LOW 1077A>G Leu359Leu
M0071879 GJLFPKJH_00016 21393 6 Skin 0.43 protein_coding synonymous_variant LOW 1068G>T Gly356Gly
M0071880 GJLFPKJH_00016 21396 6 Skin 0.43 protein_coding synonymous_variant LOW 1065A>G Ala355Ala
M0071881 GJLFPKJH_00016 21432 7 Skin 0.50 protein_coding synonymous_variant LOW 1029A>C Ala343Ala
M0071882 GJLFPKJH_00016 21461 6 Skin 0.43 protein_coding synonymous_variant LOW 1000T>C Leu334Leu
M0071883 GJLFPKJH_00016 21491 3 Skin 0.21 protein_coding missense_variant MODERATE 970G>T Asp324Tyr
M0071884 GJLFPKJH_00016 21639 3 Skin 0.21 protein_coding synonymous_variant LOW 822T>G Ser274Ser
M0071885 GJLFPKJH_00016 21654 6 Skin 0.43 protein_coding synonymous_variant LOW 807T>C Val269Val
M0071886 GJLFPKJH_00016 21681 6 Skin 0.43 protein_coding synonymous_variant LOW 780G>A Ala260Ala
M0071887 GJLFPKJH_00016 22059 3 Skin 0.21 protein_coding synonymous_variant LOW 402G>C Thr134Thr
M0071888 GJLFPKJH_00016 22161 5 Skin 0.36 protein_coding synonymous_variant LOW 300C>A Pro100Pro
M0071889 GJLFPKJH_00013 22481 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4733G>A None
M0071890 GJLFPKJH_00013 22489 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4741A>T None
M0071891 GJLFPKJH_00013 22503 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4755G>T None
M0071892 GJLFPKJH_00013 22504 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4756A>G None
M0071893 GJLFPKJH_00013 22513 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4765T>C None
M0071894 GJLFPKJH_00017 22746 5 Skin 0.36 protein_coding synonymous_variant LOW 1215G>A Pro405Pro
M0071895 GJLFPKJH_00017 22758 5 Skin 0.36 protein_coding synonymous_variant LOW 1203T>C Tyr401Tyr
M0071896 GJLFPKJH_00017 22788 4 Skin 0.29 protein_coding synonymous_variant LOW 1173T>C Asp391Asp
M0071897 GJLFPKJH_00017 23001 4 Skin 0.29 protein_coding synonymous_variant LOW 960T>C Asn320Asn
M0071898 GJLFPKJH_00017 23006 4 Skin 0.29 protein_coding missense_variant MODERATE 955G>C Val319Leu
M0071899 GJLFPKJH_00017 23007 4 Skin 0.29 protein_coding synonymous_variant LOW 954A>C Val318Val
M0071900 GJLFPKJH_00017 23216 4 Skin 0.29 protein_coding missense_variant MODERATE 745G>T Val249Leu
M0071901 GJLFPKJH_00017 23223 4 Skin 0.29 protein_coding synonymous_variant LOW 738T>A Pro246Pro
M0071902 GJLFPKJH_00017 23271 4 Skin 0.29 protein_coding synonymous_variant LOW 690T>C Ser230Ser
M0071903 GJLFPKJH_00012 17170 6 Skin 0.43 protein_coding synonymous_variant LOW 579A>G Lys193Lys
M0071904 GJLFPKJH_00013 17506 5 Skin 0.36 protein_coding missense_variant MODERATE 243A>G Ile81Met
M0071905 GJLFPKJH_00014 18074 3 Skin 0.21 protein_coding synonymous_variant LOW 957T>C Tyr319Tyr
M0071906 GJLFPKJH_00014 18086 3 Skin 0.21 protein_coding synonymous_variant LOW 945T>G Leu315Leu
M0071907 GJLFPKJH_00014 18092 3 Skin 0.21 protein_coding synonymous_variant LOW 939C>T Ser313Ser
M0071908 GJLFPKJH_00014 18343 3 Skin 0.21 protein_coding missense_variant MODERATE 688A>T Thr230Ser
M0071909 GJLFPKJH_00014 18596 3 Skin 0.21 protein_coding synonymous_variant LOW 435T>A Ser145Ser
M0071910 GJLFPKJH_00014 18697 3 Skin 0.21 protein_coding synonymous_variant LOW 334C>T Leu112Leu
M0071911 GJLFPKJH_00014 18698 3 Skin 0.21 protein_coding synonymous_variant LOW 333C>T Asp111Asp
M0071912 GJLFPKJH_00014 18722 3 Skin 0.21 protein_coding synonymous_variant LOW 309C>T Tyr103Tyr
M0071913 GJLFPKJH_00015 19533 3 Skin 0.21 protein_coding synonymous_variant LOW 363G>A Val121Val
M0071914 GJLFPKJH_00015 19769 3 Skin 0.21 protein_coding missense_variant MODERATE 599C>T Thr200Ile
M0071915 GJLFPKJH_00015 19806 3 Skin 0.21 protein_coding synonymous_variant LOW 636C>T Ser212Ser
M0071916 GJLFPKJH_00015 19830 3 Skin 0.21 protein_coding synonymous_variant LOW 660G>A Val220Val
M0071917 GJLFPKJH_00015 19929 3 Skin 0.21 protein_coding synonymous_variant LOW 759T>C Ile253Ile
M0071918 GJLFPKJH_00015 19962 3 Skin 0.21 protein_coding synonymous_variant LOW 792A>G Ala264Ala
M0071919 GJLFPKJH_00009 20005 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4976G>T None
M0071920 GJLFPKJH_00016 20163 3 Skin 0.21 protein_coding synonymous_variant LOW 2298C>T Val766Val
M0071921 GJLFPKJH_00016 20250 3 Skin 0.21 protein_coding synonymous_variant LOW 2211A>G Leu737Leu
M0071922 GJLFPKJH_00016 20262 3 Skin 0.21 protein_coding synonymous_variant LOW 2199A>G Thr733Thr
M0071923 GJLFPKJH_00004 11256 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2838T>G None
M0071924 GJLFPKJH_00004 11376 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2958T>C None
M0071925 GJLFPKJH_00007 11565 3 Skin 0.21 protein_coding missense_variant MODERATE 188G>A Arg63His
M0071926 GJLFPKJH_00007 12359 4 Skin 0.29 protein_coding missense_variant MODERATE 982T>G Tyr328Asp
M0071927 GJLFPKJH_00008 13536 5 Skin 0.36 protein_coding missense_variant MODERATE 902T>G Leu301Arg
M0071928 GJLFPKJH_00008 13702 4 Skin 0.29 protein_coding splice_region_variant&stop_retained_variant LOW 1068G>A Ter356Ter
M0071929 GJLFPKJH_00005 13905 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3958G>A None
M0071930 GJLFPKJH_00005 13981 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4034C>T None
M0071931 GJLFPKJH_00009 14255 4 Skin 0.29 protein_coding missense_variant MODERATE 775C>T His259Tyr
M0071932 GJLFPKJH_00009 14369 4 Skin 0.29 protein_coding missense_variant MODERATE 661G>A Asp221Asn
M0071933 GJLFPKJH_00009 14934 5 Skin 0.36 protein_coding synonymous_variant LOW 96A>C Thr32Thr
M0071934 GJLFPKJH_00016 20505 3 Skin 0.21 protein_coding synonymous_variant LOW 1956G>C Thr652Thr
M0071935 GJLFPKJH_00016 20508 3 Skin 0.21 protein_coding synonymous_variant LOW 1953C>T Asn651Asn
M0071936 GJLFPKJH_00016 20511 3 Skin 0.21 protein_coding synonymous_variant LOW 1950C>G Val650Val
M0071937 GJLFPKJH_00016 20556 3 Skin 0.21 protein_coding synonymous_variant LOW 1905G>A Gln635Gln
M0071938 GJLFPKJH_00016 20658 3 Skin 0.21 protein_coding synonymous_variant LOW 1803G>A Ser601Ser
M0071939 GJLFPKJH_00016 20670 3 Skin 0.21 protein_coding synonymous_variant LOW 1791T>C Ser597Ser
M0071940 GJLFPKJH_00016 20673 3 Skin 0.21 protein_coding synonymous_variant LOW 1788A>G Leu596Leu
M0071941 GJLFPKJH_00016 20832 3 Skin 0.21 protein_coding synonymous_variant LOW 1629G>A Val543Val
M0071942 GJLFPKJH_00016 20889 3 Skin 0.21 protein_coding synonymous_variant LOW 1572A>G Lys524Lys
M0071943 GJLFPKJH_00016 20910 3 Skin 0.21 protein_coding synonymous_variant LOW 1551T>G Val517Val
M0071944 GJLFPKJH_00016 20978 3 Skin 0.21 protein_coding missense_variant MODERATE 1483A>G Asn495Asp
M0071945 GJLFPKJH_00016 21321 3 Skin 0.21 protein_coding synonymous_variant LOW 1140G>A Ala380Ala
M0071946 GJLFPKJH_00016 21447 3 Skin 0.21 protein_coding synonymous_variant LOW 1014G>T Gly338Gly
M0071947 GJLFPKJH_00016 21450 3 Skin 0.21 protein_coding synonymous_variant LOW 1011A>G Leu337Leu
M0071948 GJLFPKJH_00016 21456 3 Skin 0.21 protein_coding synonymous_variant LOW 1005A>G Gln335Gln
M0071949 GJLFPKJH_00016 21462 3 Skin 0.21 protein_coding synonymous_variant LOW 999G>A Leu333Leu
M0071950 GJLFPKJH_00016 21486 3 Skin 0.21 protein_coding synonymous_variant LOW 975C>T Phe325Phe
M0071951 GJLFPKJH_00016 21567 3 Skin 0.21 protein_coding synonymous_variant LOW 894T>C Cys298Cys
M0071952 GJLFPKJH_00016 21600 3 Skin 0.21 protein_coding synonymous_variant LOW 861G>A Thr287Thr
M0071953 GJLFPKJH_00016 21603 3 Skin 0.21 protein_coding synonymous_variant LOW 858C>A Ala286Ala
M0071954 GJLFPKJH_00016 21606 3 Skin 0.21 protein_coding synonymous_variant LOW 855C>T Gly285Gly
M0071955 GJLFPKJH_00016 21714 3 Skin 0.21 protein_coding synonymous_variant LOW 747G>A Lys249Lys
M0071956 GJLFPKJH_00016 21717 3 Skin 0.21 protein_coding synonymous_variant LOW 744T>C Gly248Gly
M0071957 GJLFPKJH_00010 15301 3 Skin 0.21 protein_coding missense_variant MODERATE 695C>G Thr232Ser
M0071958 GJLFPKJH_00010 15617 4 Skin 0.29 protein_coding missense_variant MODERATE 379T>C Ser127Pro
M0071959 GJLFPKJH_00010 15620 3 Skin 0.21 protein_coding missense_variant MODERATE 376G>C Val126Leu
M0071960 GJLFPKJH_00009 16584 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1555T>C None
M0071961 GJLFPKJH_00012 16814 4 Skin 0.29 protein_coding missense_variant MODERATE 223A>G Asn75Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term