Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3080
  Reference Plasmid   MET0041_bin.7__k81_18694
  Reference Plasmid Size   35334
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0071962 FIMJKAJK_00022 25166 4 Skin 0.57 protein_coding synonymous_variant LOW 1227G>T Leu409Leu
M0071963 FIMJKAJK_00022 25226 4 Skin 0.57 protein_coding synonymous_variant LOW 1167G>A Leu389Leu
M0071964 FIMJKAJK_00022 25228 4 Skin 0.57 protein_coding synonymous_variant LOW 1165T>C Leu389Leu
M0071965 FIMJKAJK_00022 25229 4 Skin 0.57 protein_coding synonymous_variant LOW 1164T>G Arg388Arg
M0071966 FIMJKAJK_00022 25231 4 Skin 0.57 protein_coding missense_variant MODERATE 1162C>A Arg388Ser
M0071967 FIMJKAJK_00022 25235 4 Skin 0.57 protein_coding synonymous_variant LOW 1158A>C Arg386Arg
M0071968 FIMJKAJK_00022 26015 6 Skin 0.86 protein_coding synonymous_variant LOW 378C>T Ser126Ser
M0071969 FIMJKAJK_00022 26029 6 Skin 0.86 protein_coding missense_variant MODERATE 364C>G Arg122Gly
M0071970 FIMJKAJK_00022 26063 4 Skin 0.57 protein_coding synonymous_variant LOW 330G>C Thr110Thr
M0071971 FIMJKAJK_00022 26111 6 Skin 0.86 protein_coding synonymous_variant LOW 282A>C Val94Val
M0071972 FIMJKAJK_00022 26168 6 Skin 0.86 protein_coding synonymous_variant LOW 225A>C Ala75Ala
M0071973 FIMJKAJK_00022 26267 4 Skin 0.57 protein_coding synonymous_variant LOW 126C>T Pro42Pro
M0071974 FIMJKAJK_00022 26269 4 Skin 0.57 protein_coding missense_variant MODERATE 124C>A Pro42Thr
M0071975 FIMJKAJK_00023 26445 6 Skin 0.86 protein_coding missense_variant MODERATE 1792G>A Asp598Asn
M0071976 FIMJKAJK_00023 26524 6 Skin 0.86 protein_coding synonymous_variant LOW 1713T>C Gly571Gly
M0071977 FIMJKAJK_00023 26620 6 Skin 0.86 protein_coding synonymous_variant LOW 1617C>T Gly539Gly
M0071978 FIMJKAJK_00023 26629 6 Skin 0.86 protein_coding synonymous_variant LOW 1608G>A Gln536Gln
M0071979 FIMJKAJK_00023 26632 6 Skin 0.86 protein_coding synonymous_variant LOW 1605T>C Leu535Leu
M0071980 FIMJKAJK_00023 26643 6 Skin 0.86 protein_coding synonymous_variant LOW 1594T>C Leu532Leu
M0071981 FIMJKAJK_00023 26653 6 Skin 0.86 protein_coding synonymous_variant LOW 1584T>C Ile528Ile
M0071982 FIMJKAJK_00023 26656 6 Skin 0.86 protein_coding synonymous_variant LOW 1581T>C Ser527Ser
M0071983 FIMJKAJK_00023 26659 6 Skin 0.86 protein_coding synonymous_variant LOW 1578A>T Ala526Ala
M0071984 FIMJKAJK_00023 26686 6 Skin 0.86 protein_coding synonymous_variant LOW 1551C>A Thr517Thr
M0071985 FIMJKAJK_00023 26724 6 Skin 0.86 protein_coding synonymous_variant LOW 1513T>C Leu505Leu
M0071986 FIMJKAJK_00023 26740 6 Skin 0.86 protein_coding synonymous_variant LOW 1497G>T Ala499Ala
M0071987 FIMJKAJK_00023 26893 6 Skin 0.86 protein_coding missense_variant MODERATE 1344G>T Gln448His
M0071988 FIMJKAJK_00023 26917 6 Skin 0.86 protein_coding synonymous_variant LOW 1320A>G Leu440Leu
M0071989 FIMJKAJK_00020 22806 3 Skin 0.43 protein_coding synonymous_variant LOW 924G>C Val308Val
M0071990 FIMJKAJK_00020 22809 3 Skin 0.43 protein_coding synonymous_variant LOW 921G>A Gln307Gln
M0071991 FIMJKAJK_00020 22827 3 Skin 0.43 protein_coding synonymous_variant LOW 903T>G Arg301Arg
M0071992 FIMJKAJK_00020 22833 3 Skin 0.43 protein_coding synonymous_variant LOW 897G>A Val299Val
M0071993 FIMJKAJK_00020 22851 3 Skin 0.43 protein_coding synonymous_variant LOW 879A>G Leu293Leu
M0071994 FIMJKAJK_00020 22887 3 Skin 0.43 protein_coding synonymous_variant LOW 843T>C Asn281Asn
M0071995 FIMJKAJK_00020 22901 3 Skin 0.43 protein_coding synonymous_variant LOW 829C>T Leu277Leu
M0071996 FIMJKAJK_00020 22905 3 Skin 0.43 protein_coding synonymous_variant LOW 825T>C Ala275Ala
M0071997 FIMJKAJK_00020 22914 3 Skin 0.43 protein_coding synonymous_variant LOW 816T>C Ala272Ala
M0071998 FIMJKAJK_00020 22920 3 Skin 0.43 protein_coding synonymous_variant LOW 810A>G Val270Val
M0071999 FIMJKAJK_00020 22953 3 Skin 0.43 protein_coding synonymous_variant LOW 777C>T Pro259Pro
M0072000 FIMJKAJK_00020 22974 3 Skin 0.43 protein_coding synonymous_variant LOW 756T>C Ser252Ser
M0072001 FIMJKAJK_00020 22986 3 Skin 0.43 protein_coding synonymous_variant LOW 744T>C Thr248Thr
M0072002 FIMJKAJK_00020 22995 3 Skin 0.43 protein_coding synonymous_variant LOW 735C>T Ser245Ser
M0072003 FIMJKAJK_00020 23000 3 Skin 0.43 protein_coding missense_variant MODERATE 730T>C Tyr244His
M0072004 FIMJKAJK_00020 23070 3 Skin 0.43 protein_coding synonymous_variant LOW 660G>T Val220Val
M0072005 FIMJKAJK_00020 23121 3 Skin 0.43 protein_coding synonymous_variant LOW 609C>T Ala203Ala
M0072006 FIMJKAJK_00020 23145 3 Skin 0.43 protein_coding synonymous_variant LOW 585G>A Ala195Ala
M0072007 FIMJKAJK_00020 23175 3 Skin 0.43 protein_coding synonymous_variant LOW 555C>G Val185Val
M0072008 FIMJKAJK_00020 23217 3 Skin 0.43 protein_coding synonymous_variant LOW 513C>T Leu171Leu
M0072009 FIMJKAJK_00020 23254 4 Skin 0.57 protein_coding missense_variant MODERATE 476T>C Val159Ala
M0072010 FIMJKAJK_00020 23265 3 Skin 0.43 protein_coding synonymous_variant LOW 465G>A Leu155Leu
M0072011 FIMJKAJK_00020 23420 3 Skin 0.43 protein_coding synonymous_variant LOW 310T>C Leu104Leu
M0072012 FIMJKAJK_00020 23424 4 Skin 0.57 protein_coding synonymous_variant LOW 306T>C Ser102Ser
M0072013 FIMJKAJK_00020 23679 3 Skin 0.43 protein_coding missense_variant MODERATE 51G>T Met17Ile
M0072014 FIMJKAJK_00019 23809 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1888A>G None
M0072015 FIMJKAJK_00019 23811 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -1890A>C None
M0072016 FIMJKAJK_00019 23959 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -2038G>A None
M0072017 FIMJKAJK_00021 24025 4 Skin 0.57 protein_coding missense_variant MODERATE 10T>C Tyr4His
M0072018 FIMJKAJK_00021 24105 4 Skin 0.57 protein_coding synonymous_variant LOW 90T>C Gly30Gly
M0072019 FIMJKAJK_00023 27808 3 Skin 0.43 protein_coding synonymous_variant LOW 429G>C Val143Val
M0072020 FIMJKAJK_00023 27868 3 Skin 0.43 protein_coding synonymous_variant LOW 369T>C His123His
M0072021 FIMJKAJK_00023 27983 4 Skin 0.57 protein_coding missense_variant MODERATE 254C>A Pro85His
M0072022 FIMJKAJK_00023 28018 3 Skin 0.43 protein_coding synonymous_variant LOW 219A>G Glu73Glu
M0072023 FIMJKAJK_00023 28045 4 Skin 0.57 protein_coding synonymous_variant LOW 192T>G Gly64Gly
M0072024 FIMJKAJK_00023 28048 4 Skin 0.57 protein_coding synonymous_variant LOW 189C>T His63His
M0072025 FIMJKAJK_00023 28060 3 Skin 0.43 protein_coding synonymous_variant LOW 177C>T Gly59Gly
M0072026 FIMJKAJK_00023 28063 3 Skin 0.43 protein_coding synonymous_variant LOW 174G>A Leu58Leu
M0072027 FIMJKAJK_00023 28069 3 Skin 0.43 protein_coding synonymous_variant LOW 168T>C Ala56Ala
M0072028 FIMJKAJK_00023 28117 3 Skin 0.43 protein_coding synonymous_variant LOW 120T>A Leu40Leu
M0072029 FIMJKAJK_00023 28120 3 Skin 0.43 protein_coding synonymous_variant LOW 117G>C Val39Val
M0072030 FIMJKAJK_00023 28126 3 Skin 0.43 protein_coding synonymous_variant LOW 111A>T Gly37Gly
M0072031 FIMJKAJK_00023 28132 3 Skin 0.43 protein_coding synonymous_variant LOW 105C>T Arg35Arg
M0072032 FIMJKAJK_00023 28138 3 Skin 0.43 protein_coding synonymous_variant LOW 99C>T Ser33Ser
M0072033 FIMJKAJK_00023 28147 3 Skin 0.43 protein_coding synonymous_variant LOW 90T>C Ile30Ile
M0072034 FIMJKAJK_00023 28183 3 Skin 0.43 protein_coding synonymous_variant LOW 54G>A Ala18Ala
M0072035 FIMJKAJK_00024 28257 4 Skin 0.57 protein_coding synonymous_variant LOW 831C>T Ala277Ala
M0072036 FIMJKAJK_00024 28395 4 Skin 0.57 protein_coding synonymous_variant LOW 693G>A Ala231Ala
M0072037 FIMJKAJK_00024 28398 4 Skin 0.57 protein_coding synonymous_variant LOW 690A>G Ala230Ala
M0072038 FIMJKAJK_00024 28404 4 Skin 0.57 protein_coding synonymous_variant LOW 684A>G Pro228Pro
M0072039 FIMJKAJK_00024 28410 4 Skin 0.57 protein_coding synonymous_variant LOW 678C>T Val226Val
M0072040 FIMJKAJK_00024 28449 3 Skin 0.43 protein_coding synonymous_variant LOW 639A>G Val213Val
M0072041 FIMJKAJK_00024 28452 3 Skin 0.43 protein_coding synonymous_variant LOW 636A>G Ala212Ala
M0072042 FIMJKAJK_00024 28458 3 Skin 0.43 protein_coding synonymous_variant LOW 630C>T Thr210Thr
M0072043 FIMJKAJK_00024 28473 3 Skin 0.43 protein_coding synonymous_variant LOW 615G>A Leu205Leu
M0072044 FIMJKAJK_00024 28475 3 Skin 0.43 protein_coding synonymous_variant LOW 613T>C Leu205Leu
M0072045 FIMJKAJK_00024 28587 3 Skin 0.43 protein_coding synonymous_variant LOW 501T>C Leu167Leu
M0072046 FIMJKAJK_00024 28601 3 Skin 0.43 protein_coding synonymous_variant LOW 487C>A Arg163Arg
M0072047 FIMJKAJK_00024 28617 4 Skin 0.57 protein_coding synonymous_variant LOW 471A>G Gly157Gly
M0072048 FIMJKAJK_00024 28646 3 Skin 0.43 protein_coding synonymous_variant LOW 442T>C Leu148Leu
M0072049 FIMJKAJK_00024 28668 3 Skin 0.43 protein_coding synonymous_variant LOW 420T>G Gly140Gly
M0072050 FIMJKAJK_00024 28671 3 Skin 0.43 protein_coding synonymous_variant LOW 417A>C Leu139Leu
M0072051 FIMJKAJK_00024 28677 3 Skin 0.43 protein_coding synonymous_variant LOW 411G>C Ser137Ser
M0072052 FIMJKAJK_00024 28680 3 Skin 0.43 protein_coding synonymous_variant LOW 408T>C Val136Val
M0072053 FIMJKAJK_00024 28728 3 Skin 0.43 protein_coding synonymous_variant LOW 360C>T Thr120Thr
M0072054 FIMJKAJK_00024 28893 3 Skin 0.43 protein_coding synonymous_variant LOW 195C>T Tyr65Tyr
M0072055 FIMJKAJK_00024 28896 3 Skin 0.43 protein_coding synonymous_variant LOW 192C>T Gly64Gly
M0072056 FIMJKAJK_00024 28908 3 Skin 0.43 protein_coding synonymous_variant LOW 180C>T His60His
M0072057 FIMJKAJK_00024 28909 3 Skin 0.43 protein_coding missense_variant MODERATE 179A>G His60Arg
M0072058 FIMJKAJK_00024 28914 3 Skin 0.43 protein_coding synonymous_variant LOW 174A>G Glu58Glu
M0072059 FIMJKAJK_00024 28917 3 Skin 0.43 protein_coding synonymous_variant LOW 171C>A Pro57Pro
M0072060 FIMJKAJK_00024 28920 3 Skin 0.43 protein_coding synonymous_variant LOW 168C>G Ala56Ala
M0072061 FIMJKAJK_00024 28935 3 Skin 0.43 protein_coding synonymous_variant LOW 153A>C Gly51Gly
M0072062 FIMJKAJK_00024 28938 3 Skin 0.43 protein_coding synonymous_variant LOW 150A>G Val50Val
M0072063 FIMJKAJK_00024 28962 4 Skin 0.57 protein_coding synonymous_variant LOW 126C>T Val42Val
M0072064 FIMJKAJK_00024 28986 4 Skin 0.57 protein_coding synonymous_variant LOW 102C>T Phe34Phe
M0072065 FIMJKAJK_00024 28992 4 Skin 0.57 protein_coding synonymous_variant LOW 96A>G Leu32Leu
M0072066 FIMJKAJK_00026 30820 3 Skin 0.43 protein_coding synonymous_variant LOW 993T>C Arg331Arg
M0072067 FIMJKAJK_00026 30839 3 Skin 0.43 protein_coding missense_variant MODERATE 974C>T Ala325Val
M0072068 FIMJKAJK_00026 30847 3 Skin 0.43 protein_coding synonymous_variant LOW 966T>C Val322Val
M0072069 FIMJKAJK_00026 30868 3 Skin 0.43 protein_coding synonymous_variant LOW 945C>T Ile315Ile
M0072070 FIMJKAJK_00026 30888 3 Skin 0.43 protein_coding synonymous_variant LOW 925A>C Arg309Arg
M0072071 FIMJKAJK_00026 30897 3 Skin 0.43 protein_coding missense_variant MODERATE 916G>A Ala306Thr
M0072072 FIMJKAJK_00026 30910 3 Skin 0.43 protein_coding synonymous_variant LOW 903A>G Ala301Ala
M0072073 FIMJKAJK_00026 30913 3 Skin 0.43 protein_coding synonymous_variant LOW 900A>G Lys300Lys
M0072074 FIMJKAJK_00026 30916 3 Skin 0.43 protein_coding synonymous_variant LOW 897A>C Ser299Ser
M0072075 FIMJKAJK_00026 30917 3 Skin 0.43 protein_coding stop_gained HIGH 896C>G Ser299*
M0072076 FIMJKAJK_00026 30918 3 Skin 0.43 protein_coding missense_variant MODERATE 895T>A Ser299Thr
M0072077 FIMJKAJK_00026 30934 3 Skin 0.43 protein_coding synonymous_variant LOW 879T>C Ser293Ser
M0072078 FIMJKAJK_00026 30991 3 Skin 0.43 protein_coding synonymous_variant LOW 822G>A Leu274Leu
M0072079 FIMJKAJK_00026 30993 3 Skin 0.43 protein_coding synonymous_variant LOW 820T>C Leu274Leu
M0072080 FIMJKAJK_00026 31735 3 Skin 0.43 protein_coding synonymous_variant LOW 78C>T Ile26Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term