Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3092
  Reference Plasmid   MET0114_bin.4__k81_1205
  Reference Plasmid Size   33337
  Reference Plasmid GC Content   0.34
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0074269 OAHCGHHK_00001 536 4 Skin 0.36 protein_coding synonymous_variant LOW 129A>T Val43Val
M0074270 OAHCGHHK_00001 542 4 Skin 0.36 protein_coding synonymous_variant LOW 123G>A Thr41Thr
M0074271 OAHCGHHK_00001 593 4 Skin 0.36 protein_coding synonymous_variant LOW 72T>C Ile24Ile
M0074272 OAHCGHHK_00002 776 4 Skin 0.36 protein_coding missense_variant MODERATE 1328T>G Ile443Ser
M0074273 OAHCGHHK_00002 1054 4 Skin 0.36 protein_coding synonymous_variant LOW 1050C>T Val350Val
M0074274 OAHCGHHK_00002 1186 4 Skin 0.36 protein_coding synonymous_variant LOW 918T>C Ile306Ile
M0074275 OAHCGHHK_00002 1756 4 Skin 0.36 protein_coding synonymous_variant LOW 348C>T Ala116Ala
M0074276 OAHCGHHK_00002 1800 4 Skin 0.36 protein_coding missense_variant MODERATE 304G>C Ala102Pro
M0074277 OAHCGHHK_00003 2387 4 Skin 0.36 protein_coding missense_variant MODERATE 425A>G Glu142Gly
M0074278 OAHCGHHK_00003 2494 4 Skin 0.36 protein_coding synonymous_variant LOW 318C>G Val106Val
M0074279 OAHCGHHK_00003 2701 4 Skin 0.36 protein_coding synonymous_variant LOW 111T>C Asp37Asp
M0074280 OAHCGHHK_00003 2710 4 Skin 0.36 protein_coding synonymous_variant LOW 102T>A Thr34Thr
M0074281 OAHCGHHK_00003 2749 4 Skin 0.36 protein_coding synonymous_variant LOW 63G>A Leu21Leu
M0074282 OAHCGHHK_00001 2935 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2271G>A None
M0074283 OAHCGHHK_00001 2940 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2276T>A None
M0074284 OAHCGHHK_00001 3005 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2341G>A None
M0074285 OAHCGHHK_00004 3136 4 Skin 0.36 protein_coding synonymous_variant LOW 90G>A Pro30Pro
M0074286 OAHCGHHK_00005 4207 4 Skin 0.36 protein_coding missense_variant MODERATE 513A>G Ile171Met
M0074287 OAHCGHHK_00005 4210 4 Skin 0.36 protein_coding missense_variant MODERATE 510A>C Gln170His
M0074288 OAHCGHHK_00005 4496 4 Skin 0.36 protein_coding missense_variant MODERATE 224A>G Asp75Gly
M0074289 OAHCGHHK_00001 4838 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4174A>G None
M0074290 OAHCGHHK_00001 5012 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4348G>T None
M0074291 OAHCGHHK_00006 5163 4 Skin 0.36 protein_coding synonymous_variant LOW 525T>C Arg175Arg
M0074292 OAHCGHHK_00002 5803 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3700G>A None
M0074293 OAHCGHHK_00002 5866 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3763C>T None
M0074294 OAHCGHHK_00002 5919 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3816T>G None
M0074295 OAHCGHHK_00007 6016 4 Skin 0.36 protein_coding missense_variant MODERATE 1369A>T Met457Leu
M0074296 OAHCGHHK_00007 6190 4 Skin 0.36 protein_coding missense_variant MODERATE 1195A>G Ile399Val
M0074297 OAHCGHHK_00007 6203 4 Skin 0.36 protein_coding synonymous_variant LOW 1182C>T Leu394Leu
M0074298 OAHCGHHK_00007 6206 4 Skin 0.36 protein_coding synonymous_variant LOW 1179G>A Leu393Leu
M0074299 OAHCGHHK_00007 6211 4 Skin 0.36 protein_coding missense_variant MODERATE 1174T>A Phe392Ile
M0074300 OAHCGHHK_00007 6230 4 Skin 0.36 protein_coding synonymous_variant LOW 1155G>A Ala385Ala
M0074301 OAHCGHHK_00007 6271 5 Skin 0.45 protein_coding missense_variant MODERATE 1114G>A Val372Ile
M0074302 OAHCGHHK_00007 6274 5 Skin 0.45 protein_coding missense_variant MODERATE 1111C>A Leu371Ile
M0074303 OAHCGHHK_00007 6286 5 Skin 0.45 protein_coding synonymous_variant LOW 1099T>C Leu367Leu
M0074304 OAHCGHHK_00007 6287 5 Skin 0.45 protein_coding synonymous_variant LOW 1098T>C Asn366Asn
M0074305 OAHCGHHK_00007 6290 5 Skin 0.45 protein_coding missense_variant MODERATE 1095G>A Met365Ile
M0074306 OAHCGHHK_00007 6293 5 Skin 0.45 protein_coding synonymous_variant LOW 1092A>G Val364Val
M0074307 OAHCGHHK_00007 6326 5 Skin 0.45 protein_coding synonymous_variant LOW 1059G>A Arg353Arg
M0074308 OAHCGHHK_00008 7587 4 Skin 0.36 protein_coding synonymous_variant LOW 1026G>A Ala342Ala
M0074309 OAHCGHHK_00008 7620 4 Skin 0.36 protein_coding synonymous_variant LOW 993A>G Gln331Gln
M0074310 OAHCGHHK_00008 7692 4 Skin 0.36 protein_coding synonymous_variant LOW 921C>A Gly307Gly
M0074311 OAHCGHHK_00008 7695 4 Skin 0.36 protein_coding synonymous_variant LOW 918T>C Val306Val
M0074312 OAHCGHHK_00008 7709 4 Skin 0.36 protein_coding synonymous_variant LOW 904T>C Leu302Leu
M0074313 OAHCGHHK_00008 7761 4 Skin 0.36 protein_coding synonymous_variant LOW 852A>G Gly284Gly
M0074314 OAHCGHHK_00008 7785 4 Skin 0.36 protein_coding synonymous_variant LOW 828G>C Gly276Gly
M0074315 OAHCGHHK_00008 7875 4 Skin 0.36 protein_coding synonymous_variant LOW 738T>C Thr246Thr
M0074316 OAHCGHHK_00008 7935 4 Skin 0.36 protein_coding synonymous_variant LOW 678C>T Ser226Ser
M0074317 OAHCGHHK_00008 8190 4 Skin 0.36 protein_coding synonymous_variant LOW 423A>G Leu141Leu
M0074318 OAHCGHHK_00009 9487 4 Skin 0.36 protein_coding synonymous_variant LOW 273C>T Ser91Ser
M0074319 OAHCGHHK_00009 9597 4 Skin 0.36 protein_coding missense_variant MODERATE 163A>C Ile55Leu
M0074320 OAHCGHHK_00006 9934 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4247T>C None
M0074321 OAHCGHHK_00011 11264 4 Skin 0.36 protein_coding missense_variant MODERATE 332G>A Ser111Asn
M0074322 OAHCGHHK_00007 11731 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4347C>T None
M0074323 OAHCGHHK_00007 11732 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4348A>G None
M0074324 OAHCGHHK_00007 11742 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4358T>A None
M0074325 OAHCGHHK_00012 11973 4 Skin 0.36 protein_coding synonymous_variant LOW 744A>G Thr248Thr
M0074326 OAHCGHHK_00012 12111 4 Skin 0.36 protein_coding synonymous_variant LOW 606A>G Glu202Glu
M0074327 OAHCGHHK_00012 12318 4 Skin 0.36 protein_coding synonymous_variant LOW 399T>C Gly133Gly
M0074328 OAHCGHHK_00012 12486 4 Skin 0.36 protein_coding synonymous_variant LOW 231T>G Ala77Ala
M0074329 OAHCGHHK_00012 12489 4 Skin 0.36 protein_coding synonymous_variant LOW 228A>C Ala76Ala
M0074330 OAHCGHHK_00012 12507 4 Skin 0.36 protein_coding synonymous_variant LOW 210T>C Asn70Asn
M0074331 OAHCGHHK_00012 12525 4 Skin 0.36 protein_coding synonymous_variant LOW 192T>C Asn64Asn
M0074332 OAHCGHHK_00009 13624 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3865T>C None
M0074333 OAHCGHHK_00014 14112 4 Skin 0.36 protein_coding synonymous_variant LOW 402A>G Thr134Thr
M0074334 OAHCGHHK_00014 14250 4 Skin 0.36 protein_coding synonymous_variant LOW 264A>G Thr88Thr
M0074335 OAHCGHHK_00015 15444 4 Skin 0.36 protein_coding synonymous_variant LOW 276C>T Gly92Gly
M0074336 OAHCGHHK_00015 15609 5 Skin 0.45 protein_coding synonymous_variant LOW 111A>G Ser37Ser
M0074337 OAHCGHHK_00016 15725 4 Skin 0.36 protein_coding missense_variant MODERATE 771A>T Glu257Asp
M0074338 OAHCGHHK_00016 15893 4 Skin 0.36 protein_coding synonymous_variant LOW 603A>G Glu201Glu
M0074339 OAHCGHHK_00016 15962 5 Skin 0.45 protein_coding synonymous_variant LOW 534C>G Ser178Ser
M0074340 OAHCGHHK_00016 16010 4 Skin 0.36 protein_coding synonymous_variant LOW 486A>T Ala162Ala
M0074341 OAHCGHHK_00016 16244 4 Skin 0.36 protein_coding synonymous_variant LOW 252G>A Leu84Leu
M0074342 OAHCGHHK_00017 16498 5 Skin 0.45 protein_coding missense_variant MODERATE 1751C>A Thr584Asn
M0074343 OAHCGHHK_00017 16500 5 Skin 0.45 protein_coding synonymous_variant LOW 1749T>C Ile583Ile
M0074344 OAHCGHHK_00017 16548 5 Skin 0.45 protein_coding synonymous_variant LOW 1701A>C Ser567Ser
M0074345 OAHCGHHK_00017 16662 4 Skin 0.36 protein_coding synonymous_variant LOW 1587C>T Ile529Ile
M0074346 OAHCGHHK_00017 16666 4 Skin 0.36 protein_coding missense_variant MODERATE 1583G>A Gly528Asp
M0074347 OAHCGHHK_00017 16866 4 Skin 0.36 protein_coding synonymous_variant LOW 1383T>A Ala461Ala
M0074348 OAHCGHHK_00017 17453 4 Skin 0.36 protein_coding missense_variant MODERATE 796A>G Ile266Val
M0074349 OAHCGHHK_00017 17507 5 Skin 0.45 protein_coding missense_variant MODERATE 742A>G Ser248Gly
M0074350 OAHCGHHK_00017 17707 5 Skin 0.45 protein_coding missense_variant MODERATE 542G>A Gly181Asp
M0074351 OAHCGHHK_00017 17728 5 Skin 0.45 protein_coding missense_variant MODERATE 521T>A Leu174Gln
M0074352 OAHCGHHK_00017 17738 5 Skin 0.45 protein_coding missense_variant MODERATE 511A>G Ile171Val
M0074353 OAHCGHHK_00017 17823 4 Skin 0.36 protein_coding synonymous_variant LOW 426G>T Gly142Gly
M0074354 OAHCGHHK_00017 17866 4 Skin 0.36 protein_coding missense_variant MODERATE 383C>T Thr128Ile
M0074355 OAHCGHHK_00017 17894 4 Skin 0.36 protein_coding missense_variant MODERATE 355C>G Gln119Glu
M0074356 OAHCGHHK_00017 17904 5 Skin 0.45 protein_coding synonymous_variant LOW 345A>G Thr115Thr
M0074357 OAHCGHHK_00017 17934 5 Skin 0.45 protein_coding synonymous_variant LOW 315T>C Val105Val
M0074358 OAHCGHHK_00017 17983 5 Skin 0.45 protein_coding missense_variant MODERATE 266C>T Ala89Val
M0074359 OAHCGHHK_00017 18204 4 Skin 0.36 protein_coding synonymous_variant LOW 45C>T His15His
M0074360 OAHCGHHK_00017 18210 4 Skin 0.36 protein_coding synonymous_variant LOW 39G>A Val13Val
M0074361 OAHCGHHK_00018 18424 5 Skin 0.45 protein_coding synonymous_variant LOW 1542A>T Thr514Thr
M0074362 OAHCGHHK_00018 18447 5 Skin 0.45 protein_coding missense_variant MODERATE 1519A>C Ile507Leu
M0074363 OAHCGHHK_00018 18523 4 Skin 0.36 protein_coding synonymous_variant LOW 1443C>T Tyr481Tyr
M0074364 OAHCGHHK_00018 18643 5 Skin 0.45 protein_coding missense_variant MODERATE 1323A>T Leu441Phe
M0074365 OAHCGHHK_00018 18645 5 Skin 0.45 protein_coding synonymous_variant LOW 1321T>C Leu441Leu
M0074366 OAHCGHHK_00018 18656 5 Skin 0.45 protein_coding missense_variant MODERATE 1310A>T Tyr437Phe
M0074367 OAHCGHHK_00018 18661 5 Skin 0.45 protein_coding synonymous_variant LOW 1305G>A Val435Val
M0074368 OAHCGHHK_00018 18825 4 Skin 0.36 protein_coding missense_variant MODERATE 1141T>G Ser381Ala
M0074369 OAHCGHHK_00018 18836 5 Skin 0.45 protein_coding missense_variant MODERATE 1130C>T Thr377Ile
M0074370 OAHCGHHK_00018 18976 5 Skin 0.45 protein_coding synonymous_variant LOW 990G>A Pro330Pro
M0074371 OAHCGHHK_00018 19057 5 Skin 0.45 protein_coding synonymous_variant LOW 909T>C Ile303Ile
M0074372 OAHCGHHK_00018 19075 5 Skin 0.45 protein_coding synonymous_variant LOW 891C>T Ile297Ile
M0074373 OAHCGHHK_00018 19081 4 Skin 0.36 protein_coding synonymous_variant LOW 885G>A Arg295Arg
M0074374 OAHCGHHK_00018 19090 4 Skin 0.36 protein_coding synonymous_variant LOW 876G>A Gln292Gln
M0074375 OAHCGHHK_00018 19205 4 Skin 0.36 protein_coding missense_variant MODERATE 761C>T Ser254Leu
M0074376 OAHCGHHK_00018 19218 5 Skin 0.45 protein_coding missense_variant MODERATE 748A>G Ile250Val
M0074377 OAHCGHHK_00018 19301 5 Skin 0.45 protein_coding missense_variant MODERATE 665T>C Ile222Thr
M0074378 OAHCGHHK_00018 19339 5 Skin 0.45 protein_coding synonymous_variant LOW 627C>T Asn209Asn
M0074379 OAHCGHHK_00018 19341 5 Skin 0.45 protein_coding missense_variant MODERATE 625A>G Asn209Asp
M0074380 OAHCGHHK_00018 19345 5 Skin 0.45 protein_coding synonymous_variant LOW 621T>C Asp207Asp
M0074381 OAHCGHHK_00018 19416 5 Skin 0.45 protein_coding missense_variant MODERATE 550A>G Asn184Asp
M0074382 OAHCGHHK_00018 19423 5 Skin 0.45 protein_coding synonymous_variant LOW 543A>G Val181Val
M0074383 OAHCGHHK_00018 19564 5 Skin 0.45 protein_coding synonymous_variant LOW 402C>T Arg134Arg
M0074384 OAHCGHHK_00018 19574 5 Skin 0.45 protein_coding missense_variant MODERATE 392C>T Ala131Val
M0074385 OAHCGHHK_00018 19581 4 Skin 0.36 protein_coding missense_variant MODERATE 385G>T Asp129Tyr
M0074386 OAHCGHHK_00020 21306 5 Skin 0.45 protein_coding synonymous_variant LOW 1653T>C Phe551Phe
M0074387 OAHCGHHK_00020 21369 5 Skin 0.45 protein_coding synonymous_variant LOW 1590A>C Ser530Ser
M0074388 OAHCGHHK_00020 21390 4 Skin 0.36 protein_coding synonymous_variant LOW 1569A>G Lys523Lys
M0074389 OAHCGHHK_00020 22092 5 Skin 0.45 protein_coding synonymous_variant LOW 867G>C Gly289Gly
M0074390 OAHCGHHK_00020 22632 5 Skin 0.45 protein_coding synonymous_variant LOW 327A>C Arg109Arg
M0074391 OAHCGHHK_00020 22670 4 Skin 0.36 protein_coding missense_variant MODERATE 289A>G Met97Val
M0074392 OAHCGHHK_00020 22701 5 Skin 0.45 protein_coding synonymous_variant LOW 258A>G Thr86Thr
M0074393 OAHCGHHK_00020 22749 5 Skin 0.45 protein_coding synonymous_variant LOW 210C>T Ser70Ser
M0074394 OAHCGHHK_00020 22854 5 Skin 0.45 protein_coding missense_variant MODERATE 105T>G Asp35Glu
M0074395 OAHCGHHK_00020 22872 5 Skin 0.45 protein_coding synonymous_variant LOW 87T>A Gly29Gly
M0074396 OAHCGHHK_00020 22911 4 Skin 0.36 protein_coding synonymous_variant LOW 48A>G Arg16Arg
M0074397 OAHCGHHK_00021 23135 4 Skin 0.36 protein_coding synonymous_variant LOW 855A>G Gly285Gly
M0074398 OAHCGHHK_00021 23228 5 Skin 0.45 protein_coding synonymous_variant LOW 762C>T Asp254Asp
M0074399 OAHCGHHK_00021 23270 4 Skin 0.36 protein_coding synonymous_variant LOW 720G>A Val240Val
M0074400 OAHCGHHK_00021 23597 5 Skin 0.45 protein_coding synonymous_variant LOW 393T>A Ala131Ala
M0074401 OAHCGHHK_00021 23699 5 Skin 0.45 protein_coding synonymous_variant LOW 291T>C Gly97Gly
M0074402 OAHCGHHK_00021 23807 5 Skin 0.45 protein_coding synonymous_variant LOW 183A>T Ile61Ile
M0074403 OAHCGHHK_00019 25064 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3853G>T None
M0074404 OAHCGHHK_00023 25574 4 Skin 0.36 protein_coding synonymous_variant LOW 378T>C Asn126Asn
M0074405 OAHCGHHK_00023 25604 4 Skin 0.36 protein_coding synonymous_variant LOW 408C>T Ile136Ile
M0074406 OAHCGHHK_00024 26573 4 Skin 0.36 protein_coding synonymous_variant LOW 369G>A Leu123Leu
M0074407 OAHCGHHK_00024 26576 4 Skin 0.36 protein_coding synonymous_variant LOW 372G>T Gly124Gly
M0074408 OAHCGHHK_00024 26579 4 Skin 0.36 protein_coding synonymous_variant LOW 375T>C Ala125Ala
M0074409 OAHCGHHK_00024 26592 4 Skin 0.36 protein_coding missense_variant MODERATE 388G>A Val130Ile
M0074410 OAHCGHHK_00024 26606 4 Skin 0.36 protein_coding synonymous_variant LOW 402A>G Ala134Ala
M0074411 OAHCGHHK_00024 26973 4 Skin 0.36 protein_coding missense_variant MODERATE 769G>A Val257Ile
M0074412 OAHCGHHK_00024 27114 4 Skin 0.36 protein_coding synonymous_variant LOW 910C>T Leu304Leu
M0074413 OAHCGHHK_00025 27349 4 Skin 0.36 protein_coding missense_variant MODERATE 153G>A Met51Ile
M0074414 OAHCGHHK_00025 27400 4 Skin 0.36 protein_coding synonymous_variant LOW 204T>A Ile68Ile
M0074415 OAHCGHHK_00025 27406 4 Skin 0.36 protein_coding synonymous_variant LOW 210A>T Ala70Ala
M0074416 OAHCGHHK_00025 27421 4 Skin 0.36 protein_coding synonymous_variant LOW 225A>G Gly75Gly
M0074417 OAHCGHHK_00025 27439 4 Skin 0.36 protein_coding synonymous_variant LOW 243G>A Leu81Leu
M0074418 OAHCGHHK_00025 27451 4 Skin 0.36 protein_coding synonymous_variant LOW 255A>G Leu85Leu
M0074419 OAHCGHHK_00025 27472 4 Skin 0.36 protein_coding synonymous_variant LOW 276T>A Pro92Pro
M0074420 OAHCGHHK_00025 27484 4 Skin 0.36 protein_coding synonymous_variant LOW 288T>A Gly96Gly
M0074421 OAHCGHHK_00025 27544 4 Skin 0.36 protein_coding synonymous_variant LOW 348A>G Thr116Thr
M0074422 OAHCGHHK_00021 28227 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4238T>C None
M0074423 OAHCGHHK_00021 28229 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4240G>T None
M0074424 OAHCGHHK_00021 28236 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4247T>A None
M0074425 OAHCGHHK_00021 28242 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4253A>T None
M0074426 OAHCGHHK_00021 28245 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4256T>G None
M0074427 OAHCGHHK_00021 28248 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4259G>A None
M0074428 OAHCGHHK_00021 28288 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4299G>A None
M0074429 OAHCGHHK_00021 28339 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4350T>A None
M0074430 OAHCGHHK_00021 28351 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4362A>G None
M0074431 OAHCGHHK_00022 29488 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4522A>G None
M0074432 OAHCGHHK_00022 29592 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4626A>G None
M0074433 OAHCGHHK_00022 29611 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4645T>G None
M0074434 OAHCGHHK_00027 29725 5 Skin 0.45 protein_coding missense_variant MODERATE 25A>G Arg9Gly
M0074435 OAHCGHHK_00027 30129 3 Skin 0.27 protein_coding synonymous_variant LOW 429C>T Asp143Asp
M0074436 OAHCGHHK_00027 30799 3 Skin 0.27 protein_coding missense_variant MODERATE 1099A>G Asn367Asp
M0074437 OAHCGHHK_00027 30800 3 Skin 0.27 protein_coding missense_variant MODERATE 1100A>G Asn367Ser
M0074438 OAHCGHHK_00027 30804 3 Skin 0.27 protein_coding missense_variant MODERATE 1104A>C Lys368Asn
M0074439 OAHCGHHK_00027 30813 3 Skin 0.27 protein_coding synonymous_variant LOW 1113T>C Gly371Gly
M0074440 OAHCGHHK_00027 30861 3 Skin 0.27 protein_coding synonymous_variant LOW 1161T>C Gly387Gly
M0074441 OAHCGHHK_00027 30879 3 Skin 0.27 protein_coding synonymous_variant LOW 1179A>G Lys393Lys
M0074442 OAHCGHHK_00027 30885 3 Skin 0.27 protein_coding synonymous_variant LOW 1185C>T Gly395Gly
M0074443 OAHCGHHK_00027 30957 3 Skin 0.27 protein_coding synonymous_variant LOW 1257C>T Gly419Gly
M0074444 OAHCGHHK_00027 30966 3 Skin 0.27 protein_coding synonymous_variant LOW 1266C>T Asp422Asp
M0074445 OAHCGHHK_00027 31221 3 Skin 0.27 protein_coding synonymous_variant LOW 1521G>C Ala507Ala
M0074446 OAHCGHHK_00027 31254 3 Skin 0.27 protein_coding synonymous_variant LOW 1554T>C Arg518Arg
M0074447 OAHCGHHK_00024 31458 3 Skin 0.27 protein_coding downstream_gene_variant MODIFIER *4258G>A None
M0074448 OAHCGHHK_00024 31513 3 Skin 0.27 protein_coding downstream_gene_variant MODIFIER *4313T>A None
M0074449 OAHCGHHK_00024 31551 3 Skin 0.27 protein_coding downstream_gene_variant MODIFIER *4351T>G None
M0074450 OAHCGHHK_00028 31919 3 Skin 0.27 protein_coding synonymous_variant LOW 1266T>G Ala422Ala
M0074451 OAHCGHHK_00028 31988 3 Skin 0.27 protein_coding synonymous_variant LOW 1197T>C Ile399Ile
M0074452 OAHCGHHK_00028 31991 3 Skin 0.27 protein_coding synonymous_variant LOW 1194G>T Ala398Ala
M0074453 OAHCGHHK_00028 32080 3 Skin 0.27 protein_coding missense_variant MODERATE 1105A>T Ile369Leu
M0074454 OAHCGHHK_00028 32117 3 Skin 0.27 protein_coding synonymous_variant LOW 1068A>T Thr356Thr
M0074455 OAHCGHHK_00028 32228 3 Skin 0.27 protein_coding synonymous_variant LOW 957T>C Phe319Phe
M0074456 OAHCGHHK_00028 32288 3 Skin 0.27 protein_coding synonymous_variant LOW 897G>A Pro299Pro
M0074457 OAHCGHHK_00028 32501 3 Skin 0.27 protein_coding synonymous_variant LOW 684T>C Ile228Ile
M0074458 OAHCGHHK_00028 32534 3 Skin 0.27 protein_coding synonymous_variant LOW 651T>C Gly217Gly
M0074459 OAHCGHHK_00028 32542 3 Skin 0.27 protein_coding missense_variant MODERATE 643G>A Val215Ile
M0074460 OAHCGHHK_00028 32545 3 Skin 0.27 protein_coding missense_variant MODERATE 640A>G Ile214Val
M0074461 OAHCGHHK_00028 32564 3 Skin 0.27 protein_coding synonymous_variant LOW 621T>C Ile207Ile
M0074462 OAHCGHHK_00028 32600 3 Skin 0.27 protein_coding synonymous_variant LOW 585C>T Tyr195Tyr
M0074463 OAHCGHHK_00028 32771 3 Skin 0.27 protein_coding synonymous_variant LOW 414G>A Ala138Ala
M0074464 OAHCGHHK_00028 32855 3 Skin 0.27 protein_coding synonymous_variant LOW 330G>A Glu110Glu
M0074465 OAHCGHHK_00028 32867 3 Skin 0.27 protein_coding synonymous_variant LOW 318T>A Ala106Ala
M0074466 OAHCGHHK_00028 33220 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -36A>G None
M0074467 OAHCGHHK_00028 33221 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -37A>G None
M0074468 OAHCGHHK_00028 33235 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -51G>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
OAHCGHHK_00027 VFG001313 SpA 95.9 3.3e-263 13 520 0.9769 1.0325 Exotoxin Immunoglobulin G binding protein A precursor experiment
OAHCGHHK_00014 VFG044262 Staphyloferrin B 100 1.3e-152 1 254 1.0 1 Nutritional/Metabolic factor bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI prediction
OAHCGHHK_00015 VFG044261 Staphyloferrin B 98.5 2.8e-237 1 400 1.0 1 Nutritional/Metabolic factor staphyloferrin B biosynthesis decarboxylase SbnH prediction
OAHCGHHK_00016 VFG044260 Staphyloferrin B 100 2.3e-144 1 258 1.0 1 Nutritional/Metabolic factor staphyloferrin B biosynthesis citrate synthase SbnG prediction
OAHCGHHK_00017 VFG044259 Staphyloferrin B 98.1 0 1 592 1.0 0.961 Nutritional/Metabolic factor 3-(L-alanin-3-ylcarbamoyl)-2-[(2- aminoethylcarbamoyl)methyl]-2-hydroxypropanoate synthase SbnF prediction
OAHCGHHK_00018 VFG044258 Staphyloferrin B 98.4 0 1 578 1.0 1 Nutritional/Metabolic factor L-2,3-diaminopropanoate--citrate ligase SbnE prediction
OAHCGHHK_00019 VFG044257 Staphyloferrin B 100 1.4e-226 1 418 1.0 1 Nutritional/Metabolic factor staphyloferrin B export MFS transporter prediction
OAHCGHHK_00020 VFG044256 Staphyloferrin B 99.3 0 1 584 1.0 1 Nutritional/Metabolic factor staphyloferrin B biosynthesis protein SbnC prediction
OAHCGHHK_00021 VFG044255 Staphyloferrin B 100 3.2e-194 1 336 1.0 1 Nutritional/Metabolic factor N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate dehydrogenase SbnB prediction
OAHCGHHK_00022 VFG044254 Staphyloferrin B 100 1.1e-188 1 326 1.0 1 Nutritional/Metabolic factor 2,3-diaminopropionate biosynthesis protein SbnA prediction
OAHCGHHK_00023 VFG044253 Staphyloferrin B 100 6.6e-184 1 330 1.0 1 Nutritional/Metabolic factor staphyloferrin B ABC transporter substrate-binding protein SirA prediction
OAHCGHHK_00024 VFG044252 Staphyloferrin B 100 1.1e-167 1 331 1.0 1 Nutritional/Metabolic factor staphyloferrin B ABC transporter permease subunit SirB prediction
OAHCGHHK_00025 VFG044251 Staphyloferrin B 100 3.2e-170 1 332 1.0 1 Nutritional/Metabolic factor staphyloferrin B ABC transporter permease subunit SirC prediction
OAHCGHHK_00027 VFG004646 SpA 98.8 9.1e-273 13 520 0.9769 1 Exotoxin Immunoglobulin G binding protein A precursor prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
OAHCGHHK_00002 ARO:3000565 99.8 5.24e-298 3 452 0.9956 1.0000 tetracycline antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
OAHCGHHK_00006 PHI:124087 sodM 100 3.2e-120 1 199 1.0000 1.0000 rodents skin infection; food poisoning; respiratory disease superoxide dismutases reduced virulence
OAHCGHHK_00026 PHI:124151 SarS 100 8.8e-136 1 250 1.0000 1.0000 rodents skin infection; food poisoning; respiratory disease transcription factor increased virulence (hypervirulence)
OAHCGHHK_00027 PHI:4570 spa 97.5 1e-271 13 520 0.9769 1.0000 rodents community-acquired infection; nosocomial infection immunoglobulin G-binding protein A reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OAHCGHHK_00009 QID97829.1|GT4 100 1.78e-281 1 388 1 1
OAHCGHHK_00027 ABQ47905.1|CBM50 99.8 1.32e-276 1 520 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
OAHCGHHK_00002 2.A.1.3.22 99.8 1.7e-233 3 452 0.9956 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
OAHCGHHK_00019 2.A.1.2.99 100 1.1e-226 1 418 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
OAHCGHHK_00023 3.A.1.14.28 100 5.2e-184 1 330 1.0000 1.4537 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
OAHCGHHK_00024 3.A.1.14.28 100 8.9e-168 1 331 1.0000 1.4581 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
OAHCGHHK_00025 3.A.1.14.28 100 2.5e-170 1 332 1.0000 1.4626 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily