Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3099
  Reference Plasmid   MET0158_bin.3__k81_10926
  Reference Plasmid Size   41224
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0075018 LFCOFDKL_00001 666 7 Skin 0.35 protein_coding missense_variant MODERATE 623A>T Lys208Met
M0075019 LFCOFDKL_00003 702 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -953G>A None
M0075020 LFCOFDKL_00002 1036 7 Skin 0.35 protein_coding synonymous_variant LOW 441G>A Lys147Lys
M0075021 LFCOFDKL_00002 1344 7 Skin 0.35 protein_coding synonymous_variant LOW 133C>T Leu45Leu
M0075022 LFCOFDKL_00002 1498 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -22T>C None
M0075023 LFCOFDKL_00002 1567 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -91T>C None
M0075024 LFCOFDKL_00002 1596 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -120A>C None
M0075025 LFCOFDKL_00003 1736 5 Skin 0.25 protein_coding missense_variant MODERATE 82A>G Ile28Val
M0075026 LFCOFDKL_00003 1856 6 Skin 0.30 protein_coding missense_variant MODERATE 202G>A Gly68Ser
M0075027 LFCOFDKL_00003 2152 6 Skin 0.30 protein_coding synonymous_variant LOW 498A>G Leu166Leu
M0075028 LFCOFDKL_00002 2447 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -971T>C None
M0075029 LFCOFDKL_00004 2554 6 Skin 0.30 protein_coding synonymous_variant LOW 702C>T Tyr234Tyr
M0075030 LFCOFDKL_00004 2960 3 Skin 0.15 protein_coding missense_variant MODERATE 296A>G Lys99Arg
M0075031 LFCOFDKL_00032 33393 3 Skin 0.15 protein_coding synonymous_variant LOW 276C>T Phe92Phe
M0075032 LFCOFDKL_00032 33405 3 Skin 0.15 protein_coding synonymous_variant LOW 264T>C His88His
M0075033 LFCOFDKL_00032 33408 3 Skin 0.15 protein_coding synonymous_variant LOW 261T>C Asp87Asp
M0075034 LFCOFDKL_00032 33426 3 Skin 0.15 protein_coding synonymous_variant LOW 243T>A Val81Val
M0075035 LFCOFDKL_00032 33456 3 Skin 0.15 protein_coding synonymous_variant LOW 213T>C His71His
M0075036 LFCOFDKL_00032 33507 3 Skin 0.15 protein_coding synonymous_variant LOW 162A>G Glu54Glu
M0075037 LFCOFDKL_00032 33564 3 Skin 0.15 protein_coding missense_variant MODERATE 105T>A Asp35Glu
M0075038 LFCOFDKL_00032 33591 3 Skin 0.15 protein_coding synonymous_variant LOW 78A>G Lys26Lys
M0075039 LFCOFDKL_00032 33599 3 Skin 0.15 protein_coding synonymous_variant LOW 70C>A Arg24Arg
M0075040 LFCOFDKL_00032 33612 3 Skin 0.15 protein_coding synonymous_variant LOW 57T>C Arg19Arg
M0075041 LFCOFDKL_00032 33615 3 Skin 0.15 protein_coding synonymous_variant LOW 54G>A Lys18Lys
M0075042 LFCOFDKL_00032 33672 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4A>T None
M0075043 LFCOFDKL_00032 33673 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -5T>A None
M0075044 LFCOFDKL_00032 33719 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -51A>G None
M0075045 LFCOFDKL_00032 33727 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -59T>A None
M0075046 LFCOFDKL_00032 33768 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -100T>C None
M0075047 LFCOFDKL_00032 33789 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -121A>T None
M0075048 LFCOFDKL_00032 33806 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -138A>G None
M0075049 LFCOFDKL_00032 33820 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -152T>C None
M0075050 LFCOFDKL_00032 33825 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -157G>C None
M0075051 LFCOFDKL_00033 33884 3 Skin 0.15 protein_coding missense_variant MODERATE 1G>A Val1Met
M0075052 LFCOFDKL_00033 34073 3 Skin 0.15 protein_coding synonymous_variant LOW 190T>C Leu64Leu
M0075053 LFCOFDKL_00033 34087 3 Skin 0.15 protein_coding synonymous_variant LOW 204G>A Pro68Pro
M0075054 LFCOFDKL_00033 34220 3 Skin 0.15 protein_coding synonymous_variant LOW 337C>T Leu113Leu
M0075055 LFCOFDKL_00033 34222 3 Skin 0.15 protein_coding synonymous_variant LOW 339A>G Leu113Leu
M0075056 LFCOFDKL_00033 34240 3 Skin 0.15 protein_coding synonymous_variant LOW 357C>T Gly119Gly
M0075057 LFCOFDKL_00033 34311 3 Skin 0.15 protein_coding missense_variant MODERATE 428T>A Phe143Tyr
M0075058 LFCOFDKL_00033 34357 3 Skin 0.15 protein_coding missense_variant MODERATE 474T>G Asp158Glu
M0075059 LFCOFDKL_00032 34455 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -787C>T None
M0075060 LFCOFDKL_00034 34558 3 Skin 0.15 protein_coding synonymous_variant LOW 49T>C Leu17Leu
M0075061 LFCOFDKL_00034 34575 3 Skin 0.15 protein_coding synonymous_variant LOW 66A>G Glu22Glu
M0075062 LFCOFDKL_00034 34632 3 Skin 0.15 protein_coding synonymous_variant LOW 123A>G Thr41Thr
M0075063 LFCOFDKL_00034 34645 3 Skin 0.15 protein_coding missense_variant MODERATE 136A>G Thr46Ala
M0075064 LFCOFDKL_00034 34698 3 Skin 0.15 protein_coding synonymous_variant LOW 189G>A Leu63Leu
M0075065 LFCOFDKL_00034 34725 3 Skin 0.15 protein_coding synonymous_variant LOW 216C>T Ile72Ile
M0075066 LFCOFDKL_00034 34773 3 Skin 0.15 protein_coding synonymous_variant LOW 264C>T Asp88Asp
M0075067 LFCOFDKL_00034 34800 4 Skin 0.20 protein_coding synonymous_variant LOW 291C>A Val97Val
M0075068 LFCOFDKL_00034 34902 4 Skin 0.20 protein_coding synonymous_variant LOW 393G>A Gln131Gln
M0075069 LFCOFDKL_00034 34923 4 Skin 0.20 protein_coding synonymous_variant LOW 414A>G Glu138Glu
M0075070 LFCOFDKL_00034 34932 4 Skin 0.20 protein_coding synonymous_variant LOW 423G>A Arg141Arg
M0075071 LFCOFDKL_00034 34965 3 Skin 0.15 protein_coding synonymous_variant LOW 456T>C Thr152Thr
M0075072 LFCOFDKL_00034 35054 5 Skin 0.25 protein_coding missense_variant MODERATE 545C>T Ala182Val
M0075073 LFCOFDKL_00034 35055 4 Skin 0.20 protein_coding synonymous_variant LOW 546T>G Ala182Ala
M0075074 LFCOFDKL_00034 35061 4 Skin 0.20 protein_coding synonymous_variant LOW 552A>G Lys184Lys
M0075075 LFCOFDKL_00034 35100 4 Skin 0.20 protein_coding synonymous_variant LOW 591A>C Ile197Ile
M0075076 LFCOFDKL_00034 35214 5 Skin 0.25 protein_coding synonymous_variant LOW 705C>T Thr235Thr
M0075077 LFCOFDKL_00034 35307 5 Skin 0.25 protein_coding synonymous_variant LOW 798A>G Thr266Thr
M0075078 LFCOFDKL_00035 35602 3 Skin 0.15 protein_coding synonymous_variant LOW 168A>C Val56Val
M0075079 LFCOFDKL_00035 35680 3 Skin 0.15 protein_coding synonymous_variant LOW 246C>T Cys82Cys
M0075080 LFCOFDKL_00035 35695 3 Skin 0.15 protein_coding synonymous_variant LOW 261G>A Gly87Gly
M0075081 LFCOFDKL_00035 35725 3 Skin 0.15 protein_coding synonymous_variant LOW 291A>C Ile97Ile
M0075082 LFCOFDKL_00035 35986 5 Skin 0.25 protein_coding synonymous_variant LOW 552A>G Leu184Leu
M0075083 LFCOFDKL_00035 36020 5 Skin 0.25 protein_coding missense_variant MODERATE 586G>C Val196Leu
M0075084 LFCOFDKL_00035 36024 5 Skin 0.25 protein_coding missense_variant MODERATE 590G>C Ser197Thr
M0075085 LFCOFDKL_00035 36443 4 Skin 0.20 protein_coding synonymous_variant LOW 1009T>C Leu337Leu
M0075086 LFCOFDKL_00035 36466 4 Skin 0.20 protein_coding synonymous_variant LOW 1032T>G Ala344Ala
M0075087 LFCOFDKL_00035 36514 4 Skin 0.20 protein_coding synonymous_variant LOW 1080C>T Asn360Asn
M0075088 LFCOFDKL_00035 36523 4 Skin 0.20 protein_coding synonymous_variant LOW 1089G>T Gly363Gly
M0075089 LFCOFDKL_00035 36544 4 Skin 0.20 protein_coding synonymous_variant LOW 1110C>T Val370Val
M0075090 LFCOFDKL_00035 36592 4 Skin 0.20 protein_coding synonymous_variant LOW 1158G>T Gly386Gly
M0075091 LFCOFDKL_00035 36624 4 Skin 0.20 protein_coding missense_variant MODERATE 1190C>A Thr397Lys
M0075092 LFCOFDKL_00035 36634 4 Skin 0.20 protein_coding synonymous_variant LOW 1200T>C Ser400Ser
M0075093 LFCOFDKL_00035 36639 4 Skin 0.20 protein_coding missense_variant MODERATE 1205G>C Ser402Thr
M0075094 LFCOFDKL_00032 36660 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2992A>T None
M0075095 LFCOFDKL_00032 36670 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3002C>A None
M0075096 LFCOFDKL_00032 36691 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3023T>C None
M0075097 LFCOFDKL_00032 36696 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3028T>A None
M0075098 LFCOFDKL_00032 36703 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3035T>G None
M0075099 LFCOFDKL_00032 36719 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3051C>T None
M0075100 LFCOFDKL_00032 36729 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3061G>A None
M0075101 LFCOFDKL_00032 36747 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3079C>T None
M0075102 LFCOFDKL_00032 36773 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3105A>T None
M0075103 LFCOFDKL_00032 36774 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3106C>T None
M0075104 LFCOFDKL_00032 36782 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3114T>C None
M0075105 LFCOFDKL_00032 36791 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3123A>T None
M0075106 LFCOFDKL_00032 36802 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3134A>C None
M0075107 LFCOFDKL_00032 36806 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3138G>A None
M0075108 LFCOFDKL_00032 36834 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3166T>G None
M0075109 LFCOFDKL_00036 36912 5 Skin 0.25 protein_coding missense_variant MODERATE 619C>A Leu207Ile
M0075110 LFCOFDKL_00036 36916 5 Skin 0.25 protein_coding synonymous_variant LOW 615C>T Ile205Ile
M0075111 LFCOFDKL_00036 36944 5 Skin 0.25 protein_coding missense_variant MODERATE 587G>A Arg196Gln
M0075112 LFCOFDKL_00036 36964 5 Skin 0.25 protein_coding synonymous_variant LOW 567G>A Leu189Leu
M0075113 LFCOFDKL_00036 36988 5 Skin 0.25 protein_coding synonymous_variant LOW 543G>A Val181Val
M0075114 LFCOFDKL_00036 36997 5 Skin 0.25 protein_coding synonymous_variant LOW 534G>A Leu178Leu
M0075115 LFCOFDKL_00036 37018 5 Skin 0.25 protein_coding synonymous_variant LOW 513C>T Ile171Ile
M0075116 LFCOFDKL_00036 37116 5 Skin 0.25 protein_coding missense_variant MODERATE 415G>A Ala139Thr
M0075117 LFCOFDKL_00036 37128 4 Skin 0.20 protein_coding missense_variant MODERATE 403T>A Phe135Ile
M0075118 LFCOFDKL_00036 37138 4 Skin 0.20 protein_coding synonymous_variant LOW 393C>T Pro131Pro
M0075119 LFCOFDKL_00036 37179 5 Skin 0.25 protein_coding missense_variant MODERATE 352A>G Ile118Val
M0075120 LFCOFDKL_00036 37198 4 Skin 0.20 protein_coding synonymous_variant LOW 333A>G Lys111Lys
M0075121 LFCOFDKL_00036 37221 5 Skin 0.25 protein_coding missense_variant MODERATE 310G>A Val104Met
M0075122 LFCOFDKL_00036 37266 5 Skin 0.25 protein_coding missense_variant MODERATE 265A>T Ile89Phe
M0075123 LFCOFDKL_00036 37303 5 Skin 0.25 protein_coding synonymous_variant LOW 228T>C His76His
M0075124 LFCOFDKL_00036 37315 4 Skin 0.20 protein_coding synonymous_variant LOW 216T>C Asp72Asp
M0075125 LFCOFDKL_00036 37351 5 Skin 0.25 protein_coding missense_variant MODERATE 180G>T Lys60Asn
M0075126 LFCOFDKL_00036 37354 4 Skin 0.20 protein_coding synonymous_variant LOW 177G>A Glu59Glu
M0075127 LFCOFDKL_00036 37408 5 Skin 0.25 protein_coding synonymous_variant LOW 123A>G Pro41Pro
M0075128 LFCOFDKL_00036 37456 4 Skin 0.20 protein_coding synonymous_variant LOW 75T>C Ile25Ile
M0075129 LFCOFDKL_00036 37486 4 Skin 0.20 protein_coding synonymous_variant LOW 45A>C Ser15Ser
M0075130 LFCOFDKL_00036 37492 5 Skin 0.25 protein_coding synonymous_variant LOW 39A>G Val13Val
M0075131 LFCOFDKL_00036 37504 4 Skin 0.20 protein_coding synonymous_variant LOW 27T>C Arg9Arg
M0075132 LFCOFDKL_00032 37564 5 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -3896T>C None
M0075133 LFCOFDKL_00032 37584 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3916G>A None
M0075134 LFCOFDKL_00032 37654 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -3986T>A None
M0075135 LFCOFDKL_00032 37659 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -3991C>T None
M0075136 LFCOFDKL_00032 37660 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3992A>C None
M0075137 LFCOFDKL_00032 37670 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4002C>A None
M0075138 LFCOFDKL_00032 37674 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4006T>C None
M0075139 LFCOFDKL_00032 37677 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4009A>C None
M0075140 LFCOFDKL_00032 37701 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4033G>T None
M0075141 LFCOFDKL_00032 37731 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4063G>C None
M0075142 LFCOFDKL_00032 37753 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4085T>C None
M0075143 LFCOFDKL_00032 37756 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4088A>G None
M0075144 LFCOFDKL_00032 37765 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4097T>A None
M0075145 LFCOFDKL_00032 37781 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4113A>T None
M0075146 LFCOFDKL_00032 37798 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4130T>G None
M0075147 LFCOFDKL_00032 37830 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4162A>G None
M0075148 LFCOFDKL_00032 37834 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4166G>T None
M0075149 LFCOFDKL_00032 37854 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4186A>G None
M0075150 LFCOFDKL_00032 37863 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4195G>A None
M0075151 LFCOFDKL_00032 37867 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4199T>C None
M0075152 LFCOFDKL_00032 37869 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4201T>C None
M0075153 LFCOFDKL_00032 37873 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4205T>A None
M0075154 LFCOFDKL_00032 37884 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4216A>C None
M0075155 LFCOFDKL_00032 37929 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4261A>C None
M0075156 LFCOFDKL_00032 37940 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4272T>C None
M0075157 LFCOFDKL_00032 37978 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4310T>C None
M0075158 LFCOFDKL_00032 37996 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4328A>C None
M0075159 LFCOFDKL_00032 38011 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4343A>G None
M0075160 LFCOFDKL_00032 38020 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4352C>A None
M0075161 LFCOFDKL_00032 38023 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4355G>C None
M0075162 LFCOFDKL_00032 38030 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4362T>C None
M0075163 LFCOFDKL_00037 38069 4 Skin 0.20 protein_coding missense_variant MODERATE 9A>T Gln3His
M0075164 LFCOFDKL_00037 38104 5 Skin 0.25 protein_coding missense_variant MODERATE 44C>T Thr15Ile
M0075165 LFCOFDKL_00037 38153 6 Skin 0.30 protein_coding missense_variant MODERATE 93T>A Phe31Leu
M0075166 LFCOFDKL_00037 38461 5 Skin 0.25 protein_coding missense_variant MODERATE 401A>G Asn134Ser
M0075167 LFCOFDKL_00037 38474 5 Skin 0.25 protein_coding synonymous_variant LOW 414T>C Ser138Ser
M0075168 LFCOFDKL_00037 38490 5 Skin 0.25 protein_coding missense_variant MODERATE 430A>G Lys144Glu
M0075169 LFCOFDKL_00037 38495 4 Skin 0.20 protein_coding synonymous_variant LOW 435T>C Ser145Ser
M0075170 LFCOFDKL_00032 38505 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4837T>G None
M0075171 LFCOFDKL_00032 38530 5 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4862A>G None
M0075172 LFCOFDKL_00032 38580 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4912A>G None
M0075173 LFCOFDKL_00032 38623 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4955A>G None
M0075174 LFCOFDKL_00032 38643 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4975C>A None
M0075175 LFCOFDKL_00038 38680 3 Skin 0.15 protein_coding synonymous_variant LOW 25T>C Leu9Leu
M0075176 LFCOFDKL_00038 38781 3 Skin 0.15 protein_coding synonymous_variant LOW 126G>A Val42Val
M0075177 LFCOFDKL_00039 39204 3 Skin 0.15 protein_coding missense_variant MODERATE 152A>G Gln51Arg
M0075178 LFCOFDKL_00039 39214 3 Skin 0.15 protein_coding synonymous_variant LOW 162C>T Asp54Asp
M0075179 LFCOFDKL_00039 39223 3 Skin 0.15 protein_coding synonymous_variant LOW 171G>A Lys57Lys
M0075180 LFCOFDKL_00039 39275 3 Skin 0.15 protein_coding synonymous_variant LOW 223T>C Leu75Leu
M0075181 LFCOFDKL_00039 39505 3 Skin 0.15 protein_coding synonymous_variant LOW 453A>G Gly151Gly
M0075182 LFCOFDKL_00039 39533 3 Skin 0.15 protein_coding missense_variant MODERATE 481T>C Ser161Pro
M0075183 LFCOFDKL_00039 39548 3 Skin 0.15 protein_coding missense_variant MODERATE 496C>T His166Tyr
M0075184 LFCOFDKL_00035 35920 3 Skin 0.15 protein_coding synonymous_variant LOW 486C>T Tyr162Tyr
M0075185 LFCOFDKL_00035 35938 3 Skin 0.15 protein_coding synonymous_variant LOW 504T>C Gly168Gly
M0075186 LFCOFDKL_00035 35941 3 Skin 0.15 protein_coding synonymous_variant LOW 507T>C Tyr169Tyr
M0075187 LFCOFDKL_00035 35962 3 Skin 0.15 protein_coding synonymous_variant LOW 528G>A Thr176Thr
M0075188 LFCOFDKL_00035 36328 3 Skin 0.15 protein_coding synonymous_variant LOW 894C>T Phe298Phe
M0075189 LFCOFDKL_00032 38520 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4852C>A None
M0075190 LFCOFDKL_00001 559 4 Skin 0.20 protein_coding synonymous_variant LOW 516T>C His172His
M0075191 LFCOFDKL_00002 1532 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -56A>T None
M0075192 LFCOFDKL_00004 3196 3 Skin 0.15 protein_coding synonymous_variant LOW 60T>C Asn20Asn
M0075193 LFCOFDKL_00019 19355 5 Skin 0.25 protein_coding synonymous_variant LOW 615A>G Glu205Glu
M0075194 LFCOFDKL_00019 19490 3 Skin 0.15 protein_coding synonymous_variant LOW 750G>A Thr250Thr
M0075195 LFCOFDKL_00019 19572 3 Skin 0.15 protein_coding missense_variant MODERATE 832A>G Ser278Gly
M0075196 LFCOFDKL_00020 20053 5 Skin 0.25 protein_coding missense_variant MODERATE 375T>A Asp125Glu
M0075197 LFCOFDKL_00020 20080 5 Skin 0.25 protein_coding synonymous_variant LOW 402G>A Ala134Ala
M0075198 LFCOFDKL_00021 20475 5 Skin 0.25 protein_coding missense_variant MODERATE 130T>G Ser44Ala
M0075199 LFCOFDKL_00021 20477 3 Skin 0.15 protein_coding synonymous_variant LOW 132A>G Ser44Ser
M0075200 LFCOFDKL_00021 20624 3 Skin 0.15 protein_coding synonymous_variant LOW 279A>G Gln93Gln
M0075201 LFCOFDKL_00022 21874 5 Skin 0.25 protein_coding synonymous_variant LOW 301T>C Leu101Leu
M0075202 LFCOFDKL_00022 22387 4 Skin 0.20 protein_coding missense_variant MODERATE 814A>G Ile272Val
M0075203 LFCOFDKL_00023 23089 3 Skin 0.15 protein_coding synonymous_variant LOW 699T>C Phe233Phe
M0075204 LFCOFDKL_00023 23122 5 Skin 0.25 protein_coding synonymous_variant LOW 732C>T Tyr244Tyr
M0075205 LFCOFDKL_00023 23248 3 Skin 0.15 protein_coding synonymous_variant LOW 858C>T Phe286Phe
M0075206 LFCOFDKL_00023 23340 3 Skin 0.15 protein_coding missense_variant MODERATE 950T>C Leu317Ser
M0075207 LFCOFDKL_00023 23353 3 Skin 0.15 protein_coding synonymous_variant LOW 963G>T Pro321Pro
M0075208 LFCOFDKL_00023 23379 3 Skin 0.15 protein_coding missense_variant MODERATE 989C>T Thr330Ile
M0075209 LFCOFDKL_00023 23386 3 Skin 0.15 protein_coding synonymous_variant LOW 996C>T Ser332Ser
M0075210 LFCOFDKL_00023 23564 5 Skin 0.25 protein_coding missense_variant MODERATE 1174A>G Thr392Ala
M0075211 LFCOFDKL_00023 23582 5 Skin 0.25 protein_coding missense_variant MODERATE 1192A>G Lys398Glu
M0075212 LFCOFDKL_00018 18564 3 Skin 0.15 protein_coding synonymous_variant LOW 84C>T Asp28Asp
M0075213 LFCOFDKL_00018 18587 3 Skin 0.15 protein_coding missense_variant MODERATE 61G>A Ala21Thr
M0075214 LFCOFDKL_00019 18758 3 Skin 0.15 protein_coding synonymous_variant LOW 18G>A Leu6Leu
M0075215 LFCOFDKL_00019 18861 3 Skin 0.15 protein_coding missense_variant MODERATE 121G>T Val41Phe
M0075216 LFCOFDKL_00019 18868 3 Skin 0.15 protein_coding missense_variant MODERATE 128G>A Arg43His
M0075217 LFCOFDKL_00019 18877 3 Skin 0.15 protein_coding missense_variant MODERATE 137C>A Thr46Lys
M0075218 LFCOFDKL_00019 19079 3 Skin 0.15 protein_coding synonymous_variant LOW 339A>G Arg113Arg
M0075219 LFCOFDKL_00019 19084 3 Skin 0.15 protein_coding missense_variant MODERATE 344A>G Asn115Ser
M0075220 LFCOFDKL_00019 19096 3 Skin 0.15 protein_coding missense_variant MODERATE 356G>A Ser119Asn
M0075221 LFCOFDKL_00019 19238 3 Skin 0.15 protein_coding synonymous_variant LOW 498G>A Arg166Arg
M0075222 LFCOFDKL_00023 22477 3 Skin 0.15 protein_coding synonymous_variant LOW 87T>C Thr29Thr
M0075223 LFCOFDKL_00023 23627 4 Skin 0.20 protein_coding missense_variant MODERATE 1237G>A Ala413Thr
M0075224 LFCOFDKL_00023 24121 3 Skin 0.15 protein_coding synonymous_variant LOW 1731A>G Leu577Leu
M0075225 LFCOFDKL_00023 24124 3 Skin 0.15 protein_coding synonymous_variant LOW 1734T>G Leu578Leu
M0075226 LFCOFDKL_00023 24262 3 Skin 0.15 protein_coding synonymous_variant LOW 1872G>A Thr624Thr
M0075227 LFCOFDKL_00025 25222 4 Skin 0.20 protein_coding missense_variant MODERATE 49A>G Ile17Val
M0075228 LFCOFDKL_00025 25563 3 Skin 0.15 protein_coding synonymous_variant LOW 390T>C Tyr130Tyr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
LFCOFDKL_00022 ARO:3007843 72.6 2.43e-131 23 274 0.9164 0.9960 glycopeptide antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
LFCOFDKL_00001 PHI:9035 mntR 75.2 5.7e-91 1 214 0.9953 1.0000 rodents skin infection; food poisoning; respiratory disease transcriptional repressor reduced virulence
LFCOFDKL_00011 PHI:10289 nupC 83.7 6.2e-187 1 410 1.0000 1.0000 primates skin infection; food poisoning; respiratory disease nucleoside permease unaffected pathogenicity
LFCOFDKL_00025 PHI:9451 PitA 87.1 7.6e-159 1 333 0.9970 0.9970 rodents skin infection; food poisoning; respiratory disease inorganic phosphate transporter unaffected pathogenicity
LFCOFDKL_00034 PHI:5242 ccpE 82.7 3.9e-135 9 292 0.9726 0.9861 rodents skin infection; food poisoning; respiratory disease regulates virulence determinant biosynthesis and pathogenesis increased virulence (hypervirulence)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LFCOFDKL_00003 QGR79107.1|GT26 100 4.87e-181 1 252 1 1
LFCOFDKL_00007 QKW67862.1|GT2 99.4 7.71e-252 1 354 1 1
LFCOFDKL_00010 QGR79100.1|GT2 99.4 0 3 725 0.9972 1
LFCOFDKL_00026 QGR79085.1|CBM50 99.6 2.13e-181 1 264 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
LFCOFDKL_00004 3.A.1.104.2 83 9.7e-125 1 264 1.0000 0.9778 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LFCOFDKL_00005 3.A.1.104.2 73.3 1e-119 12 281 0.9609 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LFCOFDKL_00013 3.A.1.14.7 75.2 1.9e-112 1 262 0.9962 0.9887 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LFCOFDKL_00017 2.A.120.1.14 78.3 1.4e-151 39 393 0.9033 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.120 The Proline/Amino Acid Permease (PAAP) Family
LFCOFDKL_00022 3.A.1.134.7 73 6.4e-103 23 274 0.9164 4.5818 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LFCOFDKL_00025 2.A.20.1.7 86.8 1.7e-158 1 333 0.9970 0.9970 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.20 The Inorganic Phosphate Transporter (PiT) Family