Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3100
  Reference Plasmid   MET0158_bin.3__k81_3058
  Reference Plasmid Size   12903
  Reference Plasmid GC Content   0.29
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0075229 DBONIHNE_00006 4168 5 Skin 0.21 protein_coding synonymous_variant LOW 732A>G Val244Val
M0075230 DBONIHNE_00006 4216 4 Skin 0.17 protein_coding synonymous_variant LOW 780G>A Arg260Arg
M0075231 DBONIHNE_00006 4270 4 Skin 0.17 protein_coding synonymous_variant LOW 834G>A Leu278Leu
M0075232 DBONIHNE_00006 4276 4 Skin 0.17 protein_coding synonymous_variant LOW 840T>A Ala280Ala
M0075233 DBONIHNE_00006 4303 4 Skin 0.17 protein_coding synonymous_variant LOW 867A>G Val289Val
M0075234 DBONIHNE_00006 4320 6 Skin 0.25 protein_coding missense_variant MODERATE 884G>A Ser295Asn
M0075235 DBONIHNE_00006 4342 5 Skin 0.21 protein_coding synonymous_variant LOW 906T>A Ser302Ser
M0075236 DBONIHNE_00006 4406 4 Skin 0.17 protein_coding missense_variant MODERATE 970C>T Leu324Phe
M0075237 DBONIHNE_00006 4408 9 Skin 0.38 protein_coding synonymous_variant LOW 972T>A Leu324Leu
M0075238 DBONIHNE_00006 4423 4 Skin 0.17 protein_coding synonymous_variant LOW 987T>C Ala329Ala
M0075239 DBONIHNE_00006 4525 10 Skin 0.42 protein_coding synonymous_variant LOW 1089T>G Val363Val
M0075240 DBONIHNE_00007 4922 4 Skin 0.17 protein_coding missense_variant MODERATE 297T>A Asp99Glu
M0075241 DBONIHNE_00007 5003 5 Skin 0.21 protein_coding synonymous_variant LOW 216G>A Val72Val
M0075242 DBONIHNE_00007 5024 5 Skin 0.21 protein_coding synonymous_variant LOW 195A>T Pro65Pro
M0075243 DBONIHNE_00007 5111 6 Skin 0.25 protein_coding synonymous_variant LOW 108A>C Ser36Ser
M0075244 DBONIHNE_00007 5123 5 Skin 0.21 protein_coding missense_variant MODERATE 96C>G His32Gln
M0075245 DBONIHNE_00007 5138 5 Skin 0.21 protein_coding synonymous_variant LOW 81C>A Val27Val
M0075246 DBONIHNE_00007 5145 5 Skin 0.21 protein_coding missense_variant MODERATE 74C>T Ala25Val
M0075247 DBONIHNE_00007 5184 4 Skin 0.17 protein_coding missense_variant MODERATE 35C>T Ala12Val
M0075248 DBONIHNE_00007 5185 4 Skin 0.17 protein_coding missense_variant MODERATE 34G>T Ala12Ser
M0075249 DBONIHNE_00002 5250 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3479C>T None
M0075250 DBONIHNE_00002 5272 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3501T>C None
M0075251 DBONIHNE_00002 5323 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3552A>C None
M0075252 DBONIHNE_00002 5341 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3570A>T None
M0075253 DBONIHNE_00002 5386 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3615T>G None
M0075254 DBONIHNE_00002 5390 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3619T>G None
M0075255 DBONIHNE_00008 5483 4 Skin 0.17 protein_coding missense_variant MODERATE 232C>T Pro78Ser
M0075256 DBONIHNE_00008 5493 5 Skin 0.21 protein_coding synonymous_variant LOW 222C>T Ser74Ser
M0075257 DBONIHNE_00008 5511 4 Skin 0.17 protein_coding synonymous_variant LOW 204T>C Asp68Asp
M0075258 DBONIHNE_00002 5821 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4050A>C None
M0075259 DBONIHNE_00002 5826 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4055T>A None
M0075260 DBONIHNE_00002 5833 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4062G>A None
M0075261 DBONIHNE_00002 5845 6 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4074A>T None
M0075262 DBONIHNE_00009 5892 5 Skin 0.21 protein_coding synonymous_variant LOW 1500A>G Thr500Thr
M0075263 DBONIHNE_00009 5898 3 Skin 0.13 protein_coding synonymous_variant LOW 1494T>C Asn498Asn
M0075264 DBONIHNE_00009 5910 4 Skin 0.17 protein_coding synonymous_variant LOW 1482C>T Asn494Asn
M0075265 DBONIHNE_00009 5914 7 Skin 0.29 protein_coding missense_variant MODERATE 1478A>C Asn493Thr
M0075266 DBONIHNE_00009 5964 3 Skin 0.13 protein_coding synonymous_variant LOW 1428A>G Gln476Gln
M0075267 DBONIHNE_00009 5985 4 Skin 0.17 protein_coding synonymous_variant LOW 1407C>T Ile469Ile
M0075268 DBONIHNE_00009 6024 3 Skin 0.13 protein_coding synonymous_variant LOW 1368T>C Ile456Ile
M0075269 DBONIHNE_00009 6060 5 Skin 0.21 protein_coding synonymous_variant LOW 1332T>C Ile444Ile
M0075270 DBONIHNE_00009 6075 3 Skin 0.13 protein_coding synonymous_variant LOW 1317T>C Asn439Asn
M0075271 DBONIHNE_00009 6102 3 Skin 0.13 protein_coding synonymous_variant LOW 1290A>G Gln430Gln
M0075272 DBONIHNE_00009 6120 3 Skin 0.13 protein_coding synonymous_variant LOW 1272C>T Tyr424Tyr
M0075273 DBONIHNE_00009 6183 3 Skin 0.13 protein_coding synonymous_variant LOW 1209T>C Tyr403Tyr
M0075274 DBONIHNE_00009 6237 5 Skin 0.21 protein_coding synonymous_variant LOW 1155G>T Leu385Leu
M0075275 DBONIHNE_00009 6252 5 Skin 0.21 protein_coding synonymous_variant LOW 1140C>T Leu380Leu
M0075276 DBONIHNE_00009 6315 7 Skin 0.29 protein_coding synonymous_variant LOW 1077T>C Cys359Cys
M0075277 DBONIHNE_00009 6342 6 Skin 0.25 protein_coding synonymous_variant LOW 1050A>G Ala350Ala
M0075278 DBONIHNE_00009 6371 6 Skin 0.25 protein_coding synonymous_variant LOW 1021T>C Leu341Leu
M0075279 DBONIHNE_00009 6384 6 Skin 0.25 protein_coding synonymous_variant LOW 1008A>G Lys336Lys
M0075280 DBONIHNE_00009 6385 6 Skin 0.25 protein_coding missense_variant MODERATE 1007A>G Lys336Arg
M0075281 DBONIHNE_00009 6441 5 Skin 0.21 protein_coding synonymous_variant LOW 951T>C Thr317Thr
M0075282 DBONIHNE_00009 6476 5 Skin 0.21 protein_coding missense_variant MODERATE 916A>G Ile306Val
M0075283 DBONIHNE_00009 6489 5 Skin 0.21 protein_coding synonymous_variant LOW 903C>T His301His
M0075284 DBONIHNE_00009 6492 6 Skin 0.25 protein_coding synonymous_variant LOW 900C>T Thr300Thr
M0075285 DBONIHNE_00009 6521 6 Skin 0.25 protein_coding missense_variant MODERATE 871C>T His291Tyr
M0075286 DBONIHNE_00009 6606 5 Skin 0.21 protein_coding synonymous_variant LOW 786G>A Glu262Glu
M0075287 DBONIHNE_00009 6621 5 Skin 0.21 protein_coding synonymous_variant LOW 771T>C Tyr257Tyr
M0075288 DBONIHNE_00009 6702 6 Skin 0.25 protein_coding synonymous_variant LOW 690C>T Ile230Ile
M0075289 DBONIHNE_00009 6711 5 Skin 0.21 protein_coding synonymous_variant LOW 681T>C Ile227Ile
M0075290 DBONIHNE_00009 6738 5 Skin 0.21 protein_coding synonymous_variant LOW 654A>C Leu218Leu
M0075291 DBONIHNE_00009 6791 5 Skin 0.21 protein_coding synonymous_variant LOW 601T>C Leu201Leu
M0075292 DBONIHNE_00009 6845 5 Skin 0.21 protein_coding missense_variant MODERATE 547G>A Val183Ile
M0075293 DBONIHNE_00009 6849 5 Skin 0.21 protein_coding synonymous_variant LOW 543C>T Ala181Ala
M0075294 DBONIHNE_00009 6901 5 Skin 0.21 protein_coding missense_variant MODERATE 491C>A Thr164Asn
M0075295 DBONIHNE_00009 6989 5 Skin 0.21 protein_coding missense_variant MODERATE 403T>C Tyr135His
M0075296 DBONIHNE_00009 7017 6 Skin 0.25 protein_coding synonymous_variant LOW 375C>T Asn125Asn
M0075297 DBONIHNE_00009 7053 6 Skin 0.25 protein_coding synonymous_variant LOW 339T>A Arg113Arg
M0075298 DBONIHNE_00009 7054 5 Skin 0.21 protein_coding missense_variant MODERATE 338G>A Arg113His
M0075299 DBONIHNE_00009 7067 5 Skin 0.21 protein_coding missense_variant MODERATE 325C>T Leu109Phe
M0075300 DBONIHNE_00009 7098 5 Skin 0.21 protein_coding synonymous_variant LOW 294G>A Thr98Thr
M0075301 DBONIHNE_00009 7107 5 Skin 0.21 protein_coding synonymous_variant LOW 285T>A Ser95Ser
M0075302 DBONIHNE_00009 7113 5 Skin 0.21 protein_coding missense_variant MODERATE 279C>A His93Gln
M0075303 DBONIHNE_00009 7131 5 Skin 0.21 protein_coding synonymous_variant LOW 261A>G Gln87Gln
M0075304 DBONIHNE_00009 7151 6 Skin 0.25 protein_coding missense_variant MODERATE 241T>C Tyr81His
M0075305 DBONIHNE_00009 7175 5 Skin 0.21 protein_coding synonymous_variant LOW 217T>C Leu73Leu
M0075306 DBONIHNE_00009 7192 7 Skin 0.29 protein_coding missense_variant MODERATE 200A>C His67Pro
M0075307 DBONIHNE_00009 7222 5 Skin 0.21 protein_coding missense_variant MODERATE 170G>A Arg57Gln
M0075308 DBONIHNE_00009 7287 6 Skin 0.25 protein_coding synonymous_variant LOW 105T>C Ser35Ser
M0075309 DBONIHNE_00009 7320 6 Skin 0.25 protein_coding synonymous_variant LOW 72G>A Thr24Thr
M0075310 DBONIHNE_00009 7335 6 Skin 0.25 protein_coding synonymous_variant LOW 57G>A Arg19Arg
M0075311 DBONIHNE_00009 7350 6 Skin 0.25 protein_coding synonymous_variant LOW 42C>T Ile14Ile
M0075312 DBONIHNE_00003 7435 6 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4987C>T None
M0075313 DBONIHNE_00007 7461 8 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2243C>T None
M0075314 DBONIHNE_00007 7473 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2255T>C None
M0075315 DBONIHNE_00007 7503 8 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2285A>T None
M0075316 DBONIHNE_00007 7504 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2286C>T None
M0075317 DBONIHNE_00007 7512 6 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2294T>C None
M0075318 DBONIHNE_00010 7597 7 Skin 0.29 protein_coding synonymous_variant LOW 354G>T Val118Val
M0075319 DBONIHNE_00010 7618 6 Skin 0.25 protein_coding synonymous_variant LOW 333G>A Thr111Thr
M0075320 DBONIHNE_00010 7668 6 Skin 0.25 protein_coding missense_variant MODERATE 283T>C Tyr95His
M0075321 DBONIHNE_00010 7687 6 Skin 0.25 protein_coding synonymous_variant LOW 264T>A Ala88Ala
M0075322 DBONIHNE_00010 7716 5 Skin 0.21 protein_coding missense_variant MODERATE 235G>T Ala79Ser
M0075323 DBONIHNE_00010 7759 6 Skin 0.25 protein_coding synonymous_variant LOW 192A>G Leu64Leu
M0075324 DBONIHNE_00010 7792 7 Skin 0.29 protein_coding synonymous_variant LOW 159C>T Gly53Gly
M0075325 DBONIHNE_00010 7826 5 Skin 0.21 protein_coding missense_variant MODERATE 125A>C Gln42Pro
M0075326 DBONIHNE_00010 7828 5 Skin 0.21 protein_coding synonymous_variant LOW 123T>C His41His
M0075327 DBONIHNE_00010 7834 5 Skin 0.21 protein_coding synonymous_variant LOW 117A>G Lys39Lys
M0075328 DBONIHNE_00010 7885 5 Skin 0.21 protein_coding synonymous_variant LOW 66T>G Val22Val
M0075329 DBONIHNE_00010 7891 5 Skin 0.21 protein_coding synonymous_variant LOW 60T>C Asn20Asn
M0075330 DBONIHNE_00010 7908 7 Skin 0.29 protein_coding missense_variant MODERATE 43A>C Thr15Pro
M0075331 DBONIHNE_00007 7969 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2751A>T None
M0075332 DBONIHNE_00007 7983 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2765C>T None
M0075333 DBONIHNE_00007 7984 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2766A>T None
M0075334 DBONIHNE_00007 7986 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2768A>C None
M0075335 DBONIHNE_00007 7994 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2776C>T None
M0075336 DBONIHNE_00007 8036 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2818A>T None
M0075337 DBONIHNE_00007 8064 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2846A>T None
M0075338 DBONIHNE_00007 8068 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2850A>G None
M0075339 DBONIHNE_00007 8081 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2863G>C None
M0075340 DBONIHNE_00007 8090 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2872T>A None
M0075341 DBONIHNE_00007 8151 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2933C>T None
M0075342 DBONIHNE_00007 8167 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2949A>G None
M0075343 DBONIHNE_00007 8223 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3005T>G None
M0075344 DBONIHNE_00007 8227 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3009G>A None
M0075345 DBONIHNE_00007 8231 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3013A>G None
M0075346 DBONIHNE_00007 8252 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3034G>T None
M0075347 DBONIHNE_00007 8300 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3082C>T None
M0075348 DBONIHNE_00007 8766 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3548G>T None
M0075349 DBONIHNE_00007 8833 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3615A>G None
M0075350 DBONIHNE_00007 8843 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3625A>G None
M0075351 DBONIHNE_00011 9144 3 Skin 0.13 protein_coding synonymous_variant LOW 663C>T Asn221Asn
M0075352 DBONIHNE_00011 9369 8 Skin 0.33 protein_coding synonymous_variant LOW 438T>C Asn146Asn
M0075353 DBONIHNE_00011 9696 3 Skin 0.13 protein_coding missense_variant MODERATE 111T>A His37Gln
M0075354 DBONIHNE_00012 9857 4 Skin 0.17 protein_coding missense_variant MODERATE 598A>G Thr200Ala
M0075355 DBONIHNE_00009 11285 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3894A>G None
M0075356 DBONIHNE_00014 11466 10 Skin 0.42 protein_coding missense_variant MODERATE 78A>G Ile26Met
M0075357 DBONIHNE_00014 11487 10 Skin 0.42 protein_coding synonymous_variant LOW 99T>C His33His
M0075358 DBONIHNE_00010 12863 9 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4913A>G None
M0075359 DBONIHNE_00010 12870 9 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4920A>T None
M0075360 DBONIHNE_00004 2927 7 Skin 0.29 protein_coding synonymous_variant LOW 198C>T Val66Val
M0075361 DBONIHNE_00004 2957 6 Skin 0.25 protein_coding synonymous_variant LOW 228G>A Glu76Glu
M0075362 DBONIHNE_00004 3017 3 Skin 0.13 protein_coding synonymous_variant LOW 288C>A Gly96Gly
M0075363 DBONIHNE_00004 3041 5 Skin 0.21 protein_coding synonymous_variant LOW 312C>T Ser104Ser
M0075364 DBONIHNE_00004 3048 5 Skin 0.21 protein_coding missense_variant MODERATE 319A>G Ser107Gly
M0075365 DBONIHNE_00005 3088 3 Skin 0.13 protein_coding start_lost HIGH 3G>A Met1?
M0075366 DBONIHNE_00005 3103 3 Skin 0.13 protein_coding synonymous_variant LOW 18T>C Tyr6Tyr
M0075367 DBONIHNE_00005 3111 4 Skin 0.17 protein_coding missense_variant MODERATE 26T>C Leu9Pro
M0075368 DBONIHNE_00005 3124 8 Skin 0.33 protein_coding missense_variant MODERATE 39A>G Ile13Met
M0075369 DBONIHNE_00005 3125 3 Skin 0.13 protein_coding missense_variant MODERATE 40G>A Val14Met
M0075370 DBONIHNE_00005 3149 3 Skin 0.13 protein_coding missense_variant MODERATE 64G>A Val22Ile
M0075371 DBONIHNE_00005 3155 4 Skin 0.17 protein_coding missense_variant MODERATE 70G>A Gly24Arg
M0075372 DBONIHNE_00002 3227 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1456C>T None
M0075373 DBONIHNE_00002 3242 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1471T>G None
M0075374 DBONIHNE_00002 3253 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1482G>T None
M0075375 DBONIHNE_00002 3331 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1560A>G None
M0075376 DBONIHNE_00006 3676 5 Skin 0.21 protein_coding synonymous_variant LOW 240A>G Lys80Lys
M0075377 DBONIHNE_00006 3688 6 Skin 0.25 protein_coding synonymous_variant LOW 252C>T Ser84Ser
M0075378 DBONIHNE_00006 3985 3 Skin 0.13 protein_coding synonymous_variant LOW 549A>G Ala183Ala
M0075379 DBONIHNE_00006 3997 3 Skin 0.13 protein_coding synonymous_variant LOW 561G>A Lys187Lys
M0075380 DBONIHNE_00006 4696 4 Skin 0.17 protein_coding synonymous_variant LOW 1260C>T Val420Val
M0075381 DBONIHNE_00002 4743 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2972C>T None
M0075382 DBONIHNE_00002 4746 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2975G>T None
M0075383 DBONIHNE_00002 4796 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3025G>T None
M0075384 DBONIHNE_00002 4819 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3048G>A None
M0075385 DBONIHNE_00002 4844 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3073G>A None
M0075386 DBONIHNE_00002 4848 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3077A>C None
M0075387 DBONIHNE_00002 4849 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3078A>G None
M0075388 DBONIHNE_00002 4864 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3093T>C None
M0075389 DBONIHNE_00011 8916 5 Skin 0.21 protein_coding synonymous_variant LOW 891G>A Leu297Leu
M0075390 DBONIHNE_00011 8931 5 Skin 0.21 protein_coding synonymous_variant LOW 876T>C Ile292Ile
M0075391 DBONIHNE_00011 9006 5 Skin 0.21 protein_coding synonymous_variant LOW 801A>C Thr267Thr
M0075392 DBONIHNE_00011 9018 5 Skin 0.21 protein_coding synonymous_variant LOW 789A>G Leu263Leu
M0075393 DBONIHNE_00011 9030 4 Skin 0.17 protein_coding synonymous_variant LOW 777T>C Phe259Phe
M0075394 DBONIHNE_00011 9036 3 Skin 0.13 protein_coding synonymous_variant LOW 771G>T Thr257Thr
M0075395 DBONIHNE_00011 9090 4 Skin 0.17 protein_coding synonymous_variant LOW 717A>T Ser239Ser
M0075396 DBONIHNE_00011 9165 4 Skin 0.17 protein_coding synonymous_variant LOW 642A>G Glu214Glu
M0075397 DBONIHNE_00011 9171 4 Skin 0.17 protein_coding synonymous_variant LOW 636A>G Leu212Leu
M0075398 DBONIHNE_00011 9177 4 Skin 0.17 protein_coding synonymous_variant LOW 630G>A Glu210Glu
M0075399 DBONIHNE_00012 9879 4 Skin 0.17 protein_coding synonymous_variant LOW 576C>A Ile192Ile
M0075400 DBONIHNE_00012 9945 5 Skin 0.21 protein_coding missense_variant MODERATE 510C>A His170Gln
M0075401 DBONIHNE_00012 9948 5 Skin 0.21 protein_coding synonymous_variant LOW 507C>A Pro169Pro
M0075402 DBONIHNE_00012 10443 3 Skin 0.13 protein_coding synonymous_variant LOW 12T>C Asp4Asp
M0075403 DBONIHNE_00004 1249 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1481A>G None
M0075404 DBONIHNE_00004 1258 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1472G>A None
M0075405 DBONIHNE_00004 1308 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1422C>T None
M0075406 DBONIHNE_00004 1317 8 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1413A>G None
M0075407 DBONIHNE_00002 1685 7 Skin 0.29 protein_coding synonymous_variant LOW 87T>C Asn29Asn
M0075408 DBONIHNE_00002 1717 8 Skin 0.33 protein_coding missense_variant MODERATE 55T>G Leu19Val
M0075409 DBONIHNE_00003 2096 11 Skin 0.46 protein_coding missense_variant MODERATE 353T>A Ile118Asn
M0075410 DBONIHNE_00003 2416 4 Skin 0.17 protein_coding synonymous_variant LOW 33A>G Gln11Gln
M0075411 DBONIHNE_00002 2495 6 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -724T>A None
M0075412 DBONIHNE_00002 2510 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -739A>G None
M0075413 DBONIHNE_00002 2561 6 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -790C>A None
M0075414 DBONIHNE_00002 2658 6 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -887A>G None
M0075415 DBONIHNE_00002 2712 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -941C>A None
M0075416 DBONIHNE_00004 2840 6 Skin 0.25 protein_coding synonymous_variant LOW 111A>G Val37Val
M0075417 DBONIHNE_00004 2858 8 Skin 0.33 protein_coding synonymous_variant LOW 129C>T Tyr43Tyr
M0075418 DBONIHNE_00004 2912 4 Skin 0.17 protein_coding synonymous_variant LOW 183T>C Ser61Ser
M0075419 DBONIHNE_00004 2942 3 Skin 0.13 protein_coding synonymous_variant LOW 213A>G Val71Val
M0075420 DBONIHNE_00005 3098 4 Skin 0.17 protein_coding stop_gained HIGH 13C>T Gln5*
M0075421 DBONIHNE_00005 3178 4 Skin 0.17 protein_coding missense_variant MODERATE 93A>T Leu31Phe
M0075422 DBONIHNE_00006 3601 4 Skin 0.17 protein_coding synonymous_variant LOW 165T>C Asn55Asn
M0075423 DBONIHNE_00006 3764 4 Skin 0.17 protein_coding missense_variant MODERATE 328A>G Ile110Val
M0075424 DBONIHNE_00002 1744 4 Skin 0.17 protein_coding missense_variant MODERATE 28G>A Ala10Thr
M0075425 DBONIHNE_00002 1776 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -5C>T None
M0075426 DBONIHNE_00002 1795 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -24T>C None
M0075427 DBONIHNE_00004 1302 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1428A>C None
M0075428 DBONIHNE_00003 2014 3 Skin 0.13 protein_coding missense_variant MODERATE 435T>A Asn145Lys
M0075429 DBONIHNE_00002 2637 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -866C>A None
M0075430 DBONIHNE_00011 9654 4 Skin 0.17 protein_coding synonymous_variant LOW 153T>C Asp51Asp
M0075431 DBONIHNE_00011 9774 4 Skin 0.17 protein_coding synonymous_variant LOW 33T>C Asn11Asn
M0075432 DBONIHNE_00007 9810 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4592G>A None
M0075433 DBONIHNE_00008 10568 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4854G>C None
M0075434 DBONIHNE_00008 10616 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4902T>C None
M0075435 DBONIHNE_00008 10652 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4938T>G None
M0075436 DBONIHNE_00013 10696 4 Skin 0.17 protein_coding missense_variant MODERATE 2T>C Val1Ala
M0075437 DBONIHNE_00013 10735 4 Skin 0.17 protein_coding missense_variant MODERATE 41A>C Gln14Pro
M0075438 DBONIHNE_00013 10772 4 Skin 0.17 protein_coding synonymous_variant LOW 78T>C Ile26Ile
M0075439 DBONIHNE_00013 10787 4 Skin 0.17 protein_coding synonymous_variant LOW 93G>A Val31Val
M0075440 DBONIHNE_00013 10837 4 Skin 0.17 protein_coding missense_variant MODERATE 143T>C Ile48Thr
M0075441 DBONIHNE_00013 10893 3 Skin 0.13 protein_coding missense_variant MODERATE 199C>A His67Asn
M0075442 DBONIHNE_00013 10896 3 Skin 0.13 protein_coding missense_variant MODERATE 202G>A Glu68Lys
M0075443 DBONIHNE_00009 11024 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3633T>C None
M0075444 DBONIHNE_00009 11045 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3654T>C None
M0075445 DBONIHNE_00010 12730 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4780T>C None
M0075446 DBONIHNE_00010 12818 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4868C>T None
M0075447 DBONIHNE_00014 12450 4 Skin 0.17 protein_coding synonymous_variant LOW 1062G>A Thr354Thr
M0075448 DBONIHNE_00014 12507 4 Skin 0.17 protein_coding synonymous_variant LOW 1119C>A Gly373Gly
M0075449 DBONIHNE_00010 12698 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4748G>A None
M0075450 DBONIHNE_00009 6156 4 Skin 0.17 protein_coding synonymous_variant LOW 1236T>C Tyr412Tyr
M0075451 DBONIHNE_00010 7588 4 Skin 0.17 protein_coding synonymous_variant LOW 363G>A Lys121Lys
M0075452 DBONIHNE_00008 10550 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4836G>A None
M0075453 DBONIHNE_00002 1550 4 Skin 0.17 protein_coding synonymous_variant LOW 222C>A Val74Val
M0075454 DBONIHNE_00002 2556 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -785G>T None
M0075455 DBONIHNE_00012 10068 3 Skin 0.13 protein_coding synonymous_variant LOW 387G>A Gly129Gly
M0075456 DBONIHNE_00012 10149 3 Skin 0.13 protein_coding synonymous_variant LOW 306G>A Ser102Ser
M0075457 DBONIHNE_00012 10248 3 Skin 0.13 protein_coding synonymous_variant LOW 207A>G Thr69Thr
M0075458 DBONIHNE_00014 12336 3 Skin 0.13 protein_coding synonymous_variant LOW 948G>A Leu316Leu
M0075459 DBONIHNE_00014 12339 3 Skin 0.13 protein_coding synonymous_variant LOW 951A>C Arg317Arg
M0075460 DBONIHNE_00001 142 3 Skin 0.13 protein_coding synonymous_variant LOW 120G>A Val40Val
M0075461 DBONIHNE_00001 331 3 Skin 0.13 protein_coding synonymous_variant LOW 309C>T Phe103Phe
M0075462 DBONIHNE_00001 421 4 Skin 0.17 protein_coding synonymous_variant LOW 399G>T Ala133Ala
M0075463 DBONIHNE_00001 821 4 Skin 0.17 protein_coding missense_variant MODERATE 799G>A Val267Ile
M0075464 DBONIHNE_00001 895 3 Skin 0.13 protein_coding synonymous_variant LOW 873C>T Leu291Leu
M0075465 DBONIHNE_00001 919 3 Skin 0.13 protein_coding synonymous_variant LOW 897T>C Tyr299Tyr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
DBONIHNE_00001 2.A.1.8.15 75.7 6.2e-154 11 360 0.9615 0.9021 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)