Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3103
  Reference Plasmid   MET0179_bin.6__k81_27359
  Reference Plasmid Size   7028
  Reference Plasmid GC Content   0.31
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0075469 FJKDDMAJ_00001 159 4 Skin 0.29 protein_coding missense_variant MODERATE 49C>A Leu17Ile
M0075470 FJKDDMAJ_00001 221 5 Skin 0.36 protein_coding synonymous_variant LOW 111A>G Leu37Leu
M0075471 FJKDDMAJ_00006 263 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3534G>A None
M0075472 FJKDDMAJ_00006 276 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3521T>C None
M0075473 FJKDDMAJ_00006 289 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3508C>T None
M0075474 FJKDDMAJ_00002 383 7 Skin 0.50 protein_coding synonymous_variant LOW 108C>T Ser36Ser
M0075475 FJKDDMAJ_00002 390 6 Skin 0.43 protein_coding missense_variant MODERATE 101T>C Val34Ala
M0075476 FJKDDMAJ_00002 448 6 Skin 0.43 protein_coding missense_variant MODERATE 43G>T Val15Leu
M0075477 FJKDDMAJ_00002 457 3 Skin 0.21 protein_coding missense_variant MODERATE 34G>T Asp12Tyr
M0075478 FJKDDMAJ_00002 499 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -9C>A None
M0075479 FJKDDMAJ_00002 510 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -20A>G None
M0075480 FJKDDMAJ_00003 583 6 Skin 0.43 protein_coding synonymous_variant LOW 1815C>T Leu605Leu
M0075481 FJKDDMAJ_00003 586 7 Skin 0.50 protein_coding synonymous_variant LOW 1812G>A Ser604Ser
M0075482 FJKDDMAJ_00003 597 6 Skin 0.43 protein_coding missense_variant MODERATE 1801A>G Ile601Val
M0075483 FJKDDMAJ_00003 601 7 Skin 0.50 protein_coding synonymous_variant LOW 1797T>C Val599Val
M0075484 FJKDDMAJ_00003 640 3 Skin 0.21 protein_coding missense_variant MODERATE 1758C>G Ile586Met
M0075485 FJKDDMAJ_00003 685 4 Skin 0.29 protein_coding synonymous_variant LOW 1713T>G Val571Val
M0075486 FJKDDMAJ_00003 715 4 Skin 0.29 protein_coding synonymous_variant LOW 1683A>G Lys561Lys
M0075487 FJKDDMAJ_00003 721 7 Skin 0.50 protein_coding synonymous_variant LOW 1677C>T Ala559Ala
M0075488 FJKDDMAJ_00003 742 7 Skin 0.50 protein_coding synonymous_variant LOW 1656T>A Thr552Thr
M0075489 FJKDDMAJ_00003 748 7 Skin 0.50 protein_coding synonymous_variant LOW 1650A>G Thr550Thr
M0075490 FJKDDMAJ_00003 781 5 Skin 0.36 protein_coding synonymous_variant LOW 1617T>C Asn539Asn
M0075491 FJKDDMAJ_00003 838 7 Skin 0.50 protein_coding synonymous_variant LOW 1560A>G Val520Val
M0075492 FJKDDMAJ_00003 911 5 Skin 0.36 protein_coding missense_variant MODERATE 1487C>A Thr496Asn
M0075493 FJKDDMAJ_00003 937 3 Skin 0.21 protein_coding missense_variant MODERATE 1461C>A Asn487Lys
M0075494 FJKDDMAJ_00003 1054 3 Skin 0.21 protein_coding synonymous_variant LOW 1344T>C Ile448Ile
M0075495 FJKDDMAJ_00003 1077 3 Skin 0.21 protein_coding synonymous_variant LOW 1321C>T Leu441Leu
M0075496 FJKDDMAJ_00003 1168 4 Skin 0.29 protein_coding synonymous_variant LOW 1230T>C Ile410Ile
M0075497 FJKDDMAJ_00003 1227 4 Skin 0.29 protein_coding missense_variant MODERATE 1171C>A His391Asn
M0075498 FJKDDMAJ_00003 1255 7 Skin 0.50 protein_coding synonymous_variant LOW 1143A>G Ser381Ser
M0075499 FJKDDMAJ_00003 1279 4 Skin 0.29 protein_coding synonymous_variant LOW 1119T>C Asn373Asn
M0075500 FJKDDMAJ_00003 1339 10 Skin 0.71 protein_coding synonymous_variant LOW 1059T>G Thr353Thr
M0075501 FJKDDMAJ_00003 1433 10 Skin 0.71 protein_coding missense_variant MODERATE 965T>C Leu322Ser
M0075502 FJKDDMAJ_00003 1486 3 Skin 0.21 protein_coding synonymous_variant LOW 912A>C Ile304Ile
M0075503 FJKDDMAJ_00003 1600 3 Skin 0.21 protein_coding missense_variant MODERATE 798G>T Gln266His
M0075504 FJKDDMAJ_00003 1663 11 Skin 0.79 protein_coding synonymous_variant LOW 735T>C Gly245Gly
M0075505 FJKDDMAJ_00003 1667 7 Skin 0.50 protein_coding missense_variant MODERATE 731T>C Val244Ala
M0075506 FJKDDMAJ_00003 1693 6 Skin 0.43 protein_coding synonymous_variant LOW 705A>G Pro235Pro
M0075507 FJKDDMAJ_00003 1828 7 Skin 0.50 protein_coding synonymous_variant LOW 570A>G Glu190Glu
M0075508 FJKDDMAJ_00003 1885 7 Skin 0.50 protein_coding synonymous_variant LOW 513G>T Ala171Ala
M0075509 FJKDDMAJ_00003 1887 3 Skin 0.21 protein_coding missense_variant MODERATE 511G>A Ala171Thr
M0075510 FJKDDMAJ_00003 1890 8 Skin 0.57 protein_coding missense_variant MODERATE 508A>G Asn170Asp
M0075511 FJKDDMAJ_00003 1905 4 Skin 0.29 protein_coding synonymous_variant LOW 493T>C Leu165Leu
M0075512 FJKDDMAJ_00003 1948 4 Skin 0.29 protein_coding synonymous_variant LOW 450T>A Ala150Ala
M0075513 FJKDDMAJ_00003 2041 5 Skin 0.36 protein_coding synonymous_variant LOW 357T>C Val119Val
M0075514 FJKDDMAJ_00003 2146 7 Skin 0.50 protein_coding synonymous_variant LOW 252T>C Arg84Arg
M0075515 FJKDDMAJ_00003 2314 7 Skin 0.50 protein_coding synonymous_variant LOW 84C>T Ser28Ser
M0075516 FJKDDMAJ_00004 2408 7 Skin 0.50 protein_coding synonymous_variant LOW 738C>T Gly246Gly
M0075517 FJKDDMAJ_00004 2432 9 Skin 0.64 protein_coding synonymous_variant LOW 714T>C Ile238Ile
M0075518 FJKDDMAJ_00004 2441 9 Skin 0.64 protein_coding synonymous_variant LOW 705C>T Tyr235Tyr
M0075519 FJKDDMAJ_00004 2448 7 Skin 0.50 protein_coding missense_variant MODERATE 698C>A Thr233Lys
M0075520 FJKDDMAJ_00004 2472 4 Skin 0.29 protein_coding missense_variant MODERATE 674A>T His225Leu
M0075521 FJKDDMAJ_00004 2477 4 Skin 0.29 protein_coding missense_variant MODERATE 669C>A Asp223Glu
M0075522 FJKDDMAJ_00004 2627 5 Skin 0.36 protein_coding synonymous_variant LOW 519G>T Leu173Leu
M0075523 FJKDDMAJ_00004 2639 6 Skin 0.43 protein_coding synonymous_variant LOW 507C>A Pro169Pro
M0075524 FJKDDMAJ_00004 2645 4 Skin 0.29 protein_coding synonymous_variant LOW 501T>C Asp167Asp
M0075525 FJKDDMAJ_00004 2667 7 Skin 0.50 protein_coding missense_variant MODERATE 479G>A Arg160Gln
M0075526 FJKDDMAJ_00004 2927 4 Skin 0.29 protein_coding synonymous_variant LOW 219G>A Leu73Leu
M0075527 FJKDDMAJ_00004 2967 3 Skin 0.21 protein_coding missense_variant MODERATE 179A>G Asp60Gly
M0075528 FJKDDMAJ_00004 3002 3 Skin 0.21 protein_coding synonymous_variant LOW 144T>C Leu48Leu
M0075529 FJKDDMAJ_00004 3029 5 Skin 0.36 protein_coding synonymous_variant LOW 117C>A Gly39Gly
M0075530 FJKDDMAJ_00004 3038 7 Skin 0.50 protein_coding synonymous_variant LOW 108C>A Ala36Ala
M0075531 FJKDDMAJ_00004 3068 5 Skin 0.36 protein_coding synonymous_variant LOW 78T>C Asn26Asn
M0075532 FJKDDMAJ_00002 452 3 Skin 0.21 protein_coding synonymous_variant LOW 39C>T Asp13Asp
M0075533 FJKDDMAJ_00003 631 4 Skin 0.29 protein_coding synonymous_variant LOW 1767T>C Gly589Gly
M0075534 FJKDDMAJ_00003 976 3 Skin 0.21 protein_coding synonymous_variant LOW 1422C>T Ser474Ser
M0075535 FJKDDMAJ_00003 1049 3 Skin 0.21 protein_coding missense_variant MODERATE 1349C>T Ala450Val
M0075536 FJKDDMAJ_00003 1354 5 Skin 0.36 protein_coding synonymous_variant LOW 1044A>C Pro348Pro
M0075537 FJKDDMAJ_00003 1711 4 Skin 0.29 protein_coding synonymous_variant LOW 687A>G Thr229Thr
M0075538 FJKDDMAJ_00003 1930 3 Skin 0.21 protein_coding missense_variant MODERATE 468G>A Met156Ile
M0075539 FJKDDMAJ_00003 2038 3 Skin 0.21 protein_coding synonymous_variant LOW 360C>T Ile120Ile
M0075540 FJKDDMAJ_00003 2343 4 Skin 0.29 protein_coding missense_variant MODERATE 55G>A Val19Ile
M0075541 FJKDDMAJ_00003 2361 4 Skin 0.29 protein_coding missense_variant MODERATE 37A>G Ser13Gly
M0075542 FJKDDMAJ_00004 2903 4 Skin 0.29 protein_coding synonymous_variant LOW 243T>C Phe81Phe
M0075543 FJKDDMAJ_00002 3150 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2660G>A None
M0075544 FJKDDMAJ_00005 3191 3 Skin 0.21 protein_coding missense_variant MODERATE 386C>T Thr129Ile
M0075545 FJKDDMAJ_00005 3352 4 Skin 0.29 protein_coding synonymous_variant LOW 225C>T Tyr75Tyr
M0075546 FJKDDMAJ_00005 3375 4 Skin 0.29 protein_coding missense_variant MODERATE 202A>G Ile68Val
M0075547 FJKDDMAJ_00005 3421 3 Skin 0.21 protein_coding synonymous_variant LOW 156G>A Thr52Thr
M0075548 FJKDDMAJ_00005 3510 3 Skin 0.21 protein_coding missense_variant MODERATE 67G>A Gly23Ser
M0075549 FJKDDMAJ_00002 3613 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3123T>C None
M0075550 FJKDDMAJ_00002 3746 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3256G>T None
M0075551 FJKDDMAJ_00002 3760 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3270G>T None
M0075552 FJKDDMAJ_00006 4117 4 Skin 0.29 protein_coding synonymous_variant LOW 321C>T His107His
M0075553 FJKDDMAJ_00006 4327 4 Skin 0.29 protein_coding synonymous_variant LOW 531G>A Lys177Lys
M0075554 FJKDDMAJ_00007 4664 3 Skin 0.21 protein_coding missense_variant MODERATE 1490A>T Tyr497Phe
M0075555 FJKDDMAJ_00002 4526 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4036G>T None
M0075556 FJKDDMAJ_00007 5290 4 Skin 0.29 protein_coding missense_variant MODERATE 864C>A Asp288Glu
M0075557 FJKDDMAJ_00003 1978 3 Skin 0.21 protein_coding synonymous_variant LOW 420C>T His140His
M0075558 FJKDDMAJ_00003 2026 3 Skin 0.21 protein_coding synonymous_variant LOW 372A>G Leu124Leu
M0075559 FJKDDMAJ_00003 2031 3 Skin 0.21 protein_coding missense_variant MODERATE 367A>G Ile123Val
M0075560 FJKDDMAJ_00003 2043 3 Skin 0.21 protein_coding missense_variant MODERATE 355G>A Val119Ile
M0075561 FJKDDMAJ_00003 2152 3 Skin 0.21 protein_coding synonymous_variant LOW 246T>C Arg82Arg
M0075562 FJKDDMAJ_00007 5920 3 Skin 0.21 protein_coding synonymous_variant LOW 234G>A Lys78Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
FJKDDMAJ_00004 PHI:6579 VraD 72.6 4e-104 1 252 1.0000 1.0000 moths skin infection; food poisoning; respiratory disease involved in gallidermin and daptomycin resistance reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
FJKDDMAJ_00004 3.A.1.134.11 72.6 9e-104 1 252 1.0000 4.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily