Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3114
  Reference Plasmid   MET0207_bin.85__k81_1070590
  Reference Plasmid Size   3819
  Reference Plasmid GC Content   0.75
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0075752 DFNJJGNJ_00001 584 3 Skin 0.60 protein_coding missense_variant MODERATE 577A>G Thr193Ala
M0075753 DFNJJGNJ_00001 637 3 Skin 0.60 protein_coding synonymous_variant LOW 630G>C Gly210Gly
M0075754 DFNJJGNJ_00001 638 3 Skin 0.60 protein_coding missense_variant MODERATE 631C>G Arg211Gly
M0075755 DFNJJGNJ_00001 796 3 Skin 0.60 protein_coding synonymous_variant LOW 789G>C Gly263Gly
M0075756 DFNJJGNJ_00001 917 4 Skin 0.80 protein_coding missense_variant MODERATE 910A>G Met304Val
M0075757 DFNJJGNJ_00001 1098 3 Skin 0.60 protein_coding missense_variant MODERATE 1091T>C Val364Ala
M0075758 DFNJJGNJ_00001 1135 3 Skin 0.60 protein_coding synonymous_variant LOW 1128T>C Leu376Leu
M0075759 DFNJJGNJ_00001 1136 3 Skin 0.60 protein_coding missense_variant MODERATE 1129T>G Ser377Ala
M0075760 DFNJJGNJ_00001 1183 3 Skin 0.60 protein_coding synonymous_variant LOW 1176G>C Ala392Ala
M0075761 DFNJJGNJ_00001 1213 3 Skin 0.60 protein_coding synonymous_variant LOW 1206A>G Gly402Gly
M0075762 DFNJJGNJ_00002 1513 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -100C>G None
M0075763 DFNJJGNJ_00002 1810 3 Skin 0.60 protein_coding synonymous_variant LOW 198T>C Val66Val
M0075764 DFNJJGNJ_00002 1873 3 Skin 0.60 protein_coding synonymous_variant LOW 261T>C Pro87Pro
M0075765 DFNJJGNJ_00002 1904 3 Skin 0.60 protein_coding missense_variant MODERATE 292A>G Ile98Val
M0075766 DFNJJGNJ_00002 1906 3 Skin 0.60 protein_coding synonymous_variant LOW 294T>C Ile98Ile
M0075767 DFNJJGNJ_00002 1924 3 Skin 0.60 protein_coding synonymous_variant LOW 312C>G Ala104Ala
M0075768 DFNJJGNJ_00002 2080 3 Skin 0.60 protein_coding synonymous_variant LOW 468G>C Gly156Gly
M0075769 DFNJJGNJ_00002 2089 3 Skin 0.60 protein_coding synonymous_variant LOW 477G>C Val159Val
M0075770 DFNJJGNJ_00002 2125 3 Skin 0.60 protein_coding synonymous_variant LOW 513G>C Gly171Gly
M0075771 DFNJJGNJ_00002 2227 3 Skin 0.60 protein_coding synonymous_variant LOW 615C>G Ala205Ala
M0075772 DFNJJGNJ_00003 2563 3 Skin 0.60 protein_coding synonymous_variant LOW 219G>C Ala73Ala
M0075773 DFNJJGNJ_00003 2566 3 Skin 0.60 protein_coding synonymous_variant LOW 222T>C Asn74Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term