Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3119
  Reference Plasmid   MET0211_bin.3__k81_4831
  Reference Plasmid Size   6947
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0075787 AMLGPLCJ_00001 233 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -8A>G None
M0075788 AMLGPLCJ_00001 404 9 Skin 0.33 protein_coding missense_variant MODERATE 164G>A Arg55Lys
M0075789 AMLGPLCJ_00001 594 9 Skin 0.33 protein_coding synonymous_variant LOW 354T>C Ala118Ala
M0075790 AMLGPLCJ_00001 657 8 Skin 0.30 protein_coding synonymous_variant LOW 417T>C Asp139Asp
M0075791 AMLGPLCJ_00001 738 10 Skin 0.37 protein_coding synonymous_variant LOW 498A>G Ala166Ala
M0075792 AMLGPLCJ_00001 741 11 Skin 0.41 protein_coding synonymous_variant LOW 501C>T His167His
M0075793 AMLGPLCJ_00001 744 11 Skin 0.41 protein_coding synonymous_variant LOW 504G>C Arg168Arg
M0075794 AMLGPLCJ_00001 747 11 Skin 0.41 protein_coding synonymous_variant LOW 507A>G Gly169Gly
M0075795 AMLGPLCJ_00001 792 5 Skin 0.19 protein_coding synonymous_variant LOW 552T>G Gly184Gly
M0075796 AMLGPLCJ_00001 837 15 Skin 0.56 protein_coding missense_variant MODERATE 597A>C Gln199His
M0075797 AMLGPLCJ_00001 873 13 Skin 0.48 protein_coding synonymous_variant LOW 633A>G Pro211Pro
M0075798 AMLGPLCJ_00001 975 8 Skin 0.30 protein_coding synonymous_variant LOW 735A>G Gly245Gly
M0075799 AMLGPLCJ_00001 1110 7 Skin 0.26 protein_coding synonymous_variant LOW 870C>T Ala290Ala
M0075800 AMLGPLCJ_00003 1401 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -766C>T None
M0075801 AMLGPLCJ_00003 1403 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -764G>C None
M0075802 AMLGPLCJ_00003 1466 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -701C>T None
M0075803 AMLGPLCJ_00003 1490 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -677G>A None
M0075804 AMLGPLCJ_00003 1606 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -561T>C None
M0075805 AMLGPLCJ_00002 1896 26 Skin 0.96 protein_coding upstream_gene_variant MODIFIER -34A>G None
M0075806 AMLGPLCJ_00002 1969 12 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -107C>T None
M0075807 AMLGPLCJ_00002 2024 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -162G>A None
M0075808 AMLGPLCJ_00002 2032 13 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -170T>G None
M0075809 AMLGPLCJ_00002 2092 13 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -230C>A None
M0075810 AMLGPLCJ_00002 2094 13 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -232G>A None
M0075811 AMLGPLCJ_00002 2098 13 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -236A>T None
M0075812 AMLGPLCJ_00003 2211 13 Skin 0.48 protein_coding synonymous_variant LOW 45G>A Pro15Pro
M0075813 AMLGPLCJ_00003 2225 19 Skin 0.70 protein_coding missense_variant MODERATE 59T>C Val20Ala
M0075814 AMLGPLCJ_00003 2271 17 Skin 0.63 protein_coding synonymous_variant LOW 105T>C Ala35Ala
M0075815 AMLGPLCJ_00003 2272 16 Skin 0.59 protein_coding missense_variant MODERATE 106C>T Pro36Ser
M0075816 AMLGPLCJ_00003 2282 18 Skin 0.67 protein_coding missense_variant MODERATE 116T>C Leu39Pro
M0075817 AMLGPLCJ_00003 2285 5 Skin 0.19 protein_coding missense_variant MODERATE 119C>T Thr40Ile
M0075818 AMLGPLCJ_00003 3471 17 Skin 0.63 protein_coding synonymous_variant LOW 1305C>T Ala435Ala
M0075819 AMLGPLCJ_00003 3514 12 Skin 0.44 protein_coding missense_variant MODERATE 1348G>A Ala450Thr
M0075820 AMLGPLCJ_00003 3590 18 Skin 0.67 protein_coding missense_variant MODERATE 1424C>T Ser475Phe
M0075821 AMLGPLCJ_00003 3592 25 Skin 0.93 protein_coding missense_variant MODERATE 1426C>G Gln476Glu
M0075822 AMLGPLCJ_00003 3597 18 Skin 0.67 protein_coding missense_variant MODERATE 1431G>T Leu477Phe
M0075823 AMLGPLCJ_00003 3644 18 Skin 0.67 protein_coding missense_variant MODERATE 1478G>A Arg493His
M0075824 AMLGPLCJ_00003 3678 4 Skin 0.15 protein_coding synonymous_variant LOW 1512C>T Asp504Asp
M0075825 AMLGPLCJ_00003 3735 20 Skin 0.74 protein_coding synonymous_variant LOW 1569C>T Ser523Ser
M0075826 AMLGPLCJ_00003 3736 21 Skin 0.78 protein_coding synonymous_variant LOW 1570T>C Leu524Leu
M0075827 AMLGPLCJ_00003 3752 26 Skin 0.96 protein_coding missense_variant MODERATE 1586T>C Val529Ala
M0075828 AMLGPLCJ_00003 3753 26 Skin 0.96 protein_coding synonymous_variant LOW 1587G>A Val529Val
M0075829 AMLGPLCJ_00002 3825 20 Skin 0.74 protein_coding upstream_gene_variant MODIFIER -1963G>A None
M0075830 AMLGPLCJ_00002 3830 20 Skin 0.74 protein_coding upstream_gene_variant MODIFIER -1968G>A None
M0075831 AMLGPLCJ_00002 3840 20 Skin 0.74 protein_coding upstream_gene_variant MODIFIER -1978A>G None
M0075832 AMLGPLCJ_00002 3883 17 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -2021T>G None
M0075833 AMLGPLCJ_00002 3896 12 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2034A>G None
M0075834 AMLGPLCJ_00002 3904 16 Skin 0.59 protein_coding upstream_gene_variant MODIFIER -2042G>A None
M0075835 AMLGPLCJ_00002 3905 16 Skin 0.59 protein_coding upstream_gene_variant MODIFIER -2043G>A None
M0075836 AMLGPLCJ_00002 3918 12 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2056A>G None
M0075837 AMLGPLCJ_00002 3964 12 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2102G>A None
M0075838 AMLGPLCJ_00002 3965 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -2103C>A None
M0075839 AMLGPLCJ_00002 4093 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2231A>G None
M0075840 AMLGPLCJ_00002 4109 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -2247A>G None
M0075841 AMLGPLCJ_00002 4232 9 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2370C>T None
M0075842 AMLGPLCJ_00002 4256 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -2394C>T None
M0075843 AMLGPLCJ_00001 816 7 Skin 0.26 protein_coding synonymous_variant LOW 576G>A Gly192Gly
M0075844 AMLGPLCJ_00001 822 7 Skin 0.26 protein_coding synonymous_variant LOW 582C>T Thr194Thr
M0075845 AMLGPLCJ_00001 848 7 Skin 0.26 protein_coding missense_variant MODERATE 608G>A Gly203Asp
M0075846 AMLGPLCJ_00001 852 7 Skin 0.26 protein_coding synonymous_variant LOW 612A>G Gly204Gly
M0075847 AMLGPLCJ_00001 854 7 Skin 0.26 protein_coding missense_variant MODERATE 614C>T Ala205Val
M0075848 AMLGPLCJ_00001 870 7 Skin 0.26 protein_coding synonymous_variant LOW 630A>G Val210Val
M0075849 AMLGPLCJ_00001 882 7 Skin 0.26 protein_coding synonymous_variant LOW 642T>C Ala214Ala
M0075850 AMLGPLCJ_00001 897 7 Skin 0.26 protein_coding synonymous_variant LOW 657C>T Pro219Pro
M0075851 AMLGPLCJ_00001 924 11 Skin 0.41 protein_coding synonymous_variant LOW 684T>C Ile228Ile
M0075852 AMLGPLCJ_00001 936 14 Skin 0.52 protein_coding synonymous_variant LOW 696T>G Ser232Ser
M0075853 AMLGPLCJ_00001 939 7 Skin 0.26 protein_coding synonymous_variant LOW 699T>C Ser233Ser
M0075854 AMLGPLCJ_00001 951 7 Skin 0.26 protein_coding synonymous_variant LOW 711C>T Ile237Ile
M0075855 AMLGPLCJ_00001 965 9 Skin 0.33 protein_coding missense_variant MODERATE 725C>T Thr242Ile
M0075856 AMLGPLCJ_00001 1044 10 Skin 0.37 protein_coding synonymous_variant LOW 804C>G Thr268Thr
M0075857 AMLGPLCJ_00001 1104 9 Skin 0.33 protein_coding synonymous_variant LOW 864C>T Arg288Arg
M0075858 AMLGPLCJ_00001 1134 10 Skin 0.37 protein_coding synonymous_variant LOW 894A>C Gly298Gly
M0075859 AMLGPLCJ_00001 1138 7 Skin 0.26 protein_coding synonymous_variant LOW 898T>C Leu300Leu
M0075860 AMLGPLCJ_00001 1164 10 Skin 0.37 protein_coding synonymous_variant LOW 924T>C Arg308Arg
M0075861 AMLGPLCJ_00001 1269 8 Skin 0.30 protein_coding synonymous_variant LOW 1029T>C Ala343Ala
M0075862 AMLGPLCJ_00001 1287 15 Skin 0.56 protein_coding synonymous_variant LOW 1047A>G Glu349Glu
M0075863 AMLGPLCJ_00001 1356 6 Skin 0.22 protein_coding synonymous_variant LOW 1116A>G Ser372Ser
M0075864 AMLGPLCJ_00003 1410 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -757A>G None
M0075865 AMLGPLCJ_00003 1412 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -755T>C None
M0075866 AMLGPLCJ_00003 1415 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -752T>C None
M0075867 AMLGPLCJ_00003 1483 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -684A>G None
M0075868 AMLGPLCJ_00003 1488 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -679T>C None
M0075869 AMLGPLCJ_00003 1489 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -678G>A None
M0075870 AMLGPLCJ_00003 1529 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -638T>C None
M0075871 AMLGPLCJ_00003 1617 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -550T>C None
M0075872 AMLGPLCJ_00002 1704 12 Skin 0.44 protein_coding synonymous_variant LOW 159C>T Asp53Asp
M0075873 AMLGPLCJ_00002 1713 14 Skin 0.52 protein_coding synonymous_variant LOW 150A>G Gly50Gly
M0075874 AMLGPLCJ_00002 1722 8 Skin 0.30 protein_coding synonymous_variant LOW 141C>T Val47Val
M0075875 AMLGPLCJ_00002 1788 10 Skin 0.37 protein_coding synonymous_variant LOW 75T>C Ala25Ala
M0075876 AMLGPLCJ_00002 1946 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -84C>T None
M0075877 AMLGPLCJ_00002 2109 9 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -247G>T None
M0075878 AMLGPLCJ_00002 2139 20 Skin 0.74 protein_coding upstream_gene_variant MODIFIER -277T>A None
M0075879 AMLGPLCJ_00003 2231 15 Skin 0.56 protein_coding missense_variant MODERATE 65C>T Thr22Met
M0075880 AMLGPLCJ_00003 2269 12 Skin 0.44 protein_coding missense_variant MODERATE 103G>A Ala35Thr
M0075881 AMLGPLCJ_00003 2294 11 Skin 0.41 protein_coding missense_variant MODERATE 128T>C Phe43Ser
M0075882 AMLGPLCJ_00003 2336 11 Skin 0.41 protein_coding missense_variant MODERATE 170G>A Arg57Lys
M0075883 AMLGPLCJ_00003 2338 11 Skin 0.41 protein_coding missense_variant MODERATE 172G>A Asp58Asn
M0075884 AMLGPLCJ_00003 2340 13 Skin 0.48 protein_coding synonymous_variant LOW 174T>C Asp58Asp
M0075885 AMLGPLCJ_00003 2657 21 Skin 0.78 protein_coding missense_variant MODERATE 491A>C Glu164Ala
M0075886 AMLGPLCJ_00003 2809 20 Skin 0.74 protein_coding synonymous_variant LOW 643C>T Leu215Leu
M0075887 AMLGPLCJ_00003 2874 10 Skin 0.37 protein_coding synonymous_variant LOW 708A>G Gln236Gln
M0075888 AMLGPLCJ_00003 2927 19 Skin 0.70 protein_coding missense_variant MODERATE 761C>A Ala254Glu
M0075889 AMLGPLCJ_00003 3784 12 Skin 0.44 protein_coding missense_variant MODERATE 1618C>T Pro540Ser
M0075890 AMLGPLCJ_00002 3809 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -1947C>T None
M0075891 AMLGPLCJ_00002 3816 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -1954A>G None
M0075892 AMLGPLCJ_00002 3819 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -1957A>G None
M0075893 AMLGPLCJ_00002 3955 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2093A>G None
M0075894 AMLGPLCJ_00002 4018 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2156G>A None
M0075895 AMLGPLCJ_00002 4022 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2160T>C None
M0075896 AMLGPLCJ_00002 4278 9 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2416C>A None
M0075897 AMLGPLCJ_00002 4282 9 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2420T>C None
M0075898 AMLGPLCJ_00002 4284 9 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2422C>T None
M0075899 AMLGPLCJ_00002 4301 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2439A>G None
M0075900 AMLGPLCJ_00002 4324 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -2462T>C None
M0075901 AMLGPLCJ_00002 4325 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -2463T>C None
M0075902 AMLGPLCJ_00002 4332 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -2470A>G None
M0075903 AMLGPLCJ_00002 4333 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2471C>T None
M0075904 AMLGPLCJ_00002 4334 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2472G>A None
M0075905 AMLGPLCJ_00002 4336 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2474T>C None
M0075906 AMLGPLCJ_00002 4337 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2475A>G None
M0075907 AMLGPLCJ_00005 4495 5 Skin 0.19 protein_coding missense_variant MODERATE 134C>T Ala45Val
M0075908 AMLGPLCJ_00005 4588 16 Skin 0.59 protein_coding missense_variant MODERATE 227C>T Ala76Val
M0075909 AMLGPLCJ_00005 4654 6 Skin 0.22 protein_coding missense_variant MODERATE 293C>T Ala98Val
M0075910 AMLGPLCJ_00005 4655 4 Skin 0.15 protein_coding synonymous_variant LOW 294T>C Ala98Ala
M0075911 AMLGPLCJ_00005 5019 15 Skin 0.56 protein_coding missense_variant MODERATE 658A>C Met220Leu
M0075912 AMLGPLCJ_00005 5319 13 Skin 0.48 protein_coding synonymous_variant LOW 958C>T Leu320Leu
M0075913 AMLGPLCJ_00005 5546 15 Skin 0.56 protein_coding synonymous_variant LOW 1185T>C Gly395Gly
M0075914 AMLGPLCJ_00005 5563 5 Skin 0.19 protein_coding missense_variant MODERATE 1202G>A Arg401His
M0075915 AMLGPLCJ_00002 5726 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -3864A>G None
M0075916 AMLGPLCJ_00002 5753 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -3891C>G None
M0075917 AMLGPLCJ_00002 5839 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -3977G>A None
M0075918 AMLGPLCJ_00002 5871 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -4009A>G None
M0075919 AMLGPLCJ_00002 5883 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -4021A>G None
M0075920 AMLGPLCJ_00006 5976 7 Skin 0.26 protein_coding missense_variant MODERATE 291C>G Ile97Met
M0075921 AMLGPLCJ_00006 6023 6 Skin 0.22 protein_coding missense_variant MODERATE 244T>G Ser82Ala
M0075922 AMLGPLCJ_00006 6063 9 Skin 0.33 protein_coding missense_variant MODERATE 204T>G Phe68Leu
M0075923 AMLGPLCJ_00006 6219 7 Skin 0.26 protein_coding synonymous_variant LOW 48G>A Val16Val
M0075924 AMLGPLCJ_00006 6258 6 Skin 0.22 protein_coding synonymous_variant LOW 9T>C Gly3Gly
M0075925 AMLGPLCJ_00002 6322 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4460A>G None
M0075926 AMLGPLCJ_00002 6354 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4492A>G None
M0075927 AMLGPLCJ_00002 6399 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4537A>G None
M0075928 AMLGPLCJ_00002 6411 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4549G>A None
M0075929 AMLGPLCJ_00002 6420 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4558T>C None
M0075930 AMLGPLCJ_00002 6432 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4570A>G None
M0075931 AMLGPLCJ_00003 2483 15 Skin 0.56 protein_coding missense_variant MODERATE 317T>C Val106Ala
M0075932 AMLGPLCJ_00003 2612 4 Skin 0.15 protein_coding missense_variant MODERATE 446G>A Arg149Gln
M0075933 AMLGPLCJ_00003 2946 9 Skin 0.33 protein_coding synonymous_variant LOW 780G>A Arg260Arg
M0075934 AMLGPLCJ_00003 3090 3 Skin 0.11 protein_coding synonymous_variant LOW 924T>C His308His
M0075935 AMLGPLCJ_00003 3594 9 Skin 0.33 protein_coding synonymous_variant LOW 1428G>A Gln476Gln
M0075936 AMLGPLCJ_00003 3601 7 Skin 0.26 protein_coding missense_variant MODERATE 1435C>T Pro479Ser
M0075937 AMLGPLCJ_00003 3625 6 Skin 0.22 protein_coding missense_variant MODERATE 1459C>G Leu487Val
M0075938 AMLGPLCJ_00003 3631 6 Skin 0.22 protein_coding missense_variant MODERATE 1465G>A Asp489Asn
M0075939 AMLGPLCJ_00003 3633 6 Skin 0.22 protein_coding synonymous_variant LOW 1467C>T Asp489Asp
M0075940 AMLGPLCJ_00005 4709 4 Skin 0.15 protein_coding synonymous_variant LOW 348T>C Phe116Phe
M0075941 AMLGPLCJ_00005 5010 3 Skin 0.11 protein_coding missense_variant MODERATE 649G>A Ala217Thr
M0075942 AMLGPLCJ_00005 5258 3 Skin 0.11 protein_coding synonymous_variant LOW 897T>C Thr299Thr
M0075943 AMLGPLCJ_00001 903 4 Skin 0.15 protein_coding synonymous_variant LOW 663C>T Phe221Phe
M0075944 AMLGPLCJ_00001 1026 3 Skin 0.11 protein_coding synonymous_variant LOW 786C>T Ala262Ala
M0075945 AMLGPLCJ_00003 2217 6 Skin 0.22 protein_coding synonymous_variant LOW 51C>T Ala17Ala
M0075946 AMLGPLCJ_00003 2334 6 Skin 0.22 protein_coding synonymous_variant LOW 168C>T Ala56Ala
M0075947 AMLGPLCJ_00003 2356 6 Skin 0.22 protein_coding missense_variant MODERATE 190A>G Lys64Glu
M0075948 AMLGPLCJ_00003 2359 13 Skin 0.48 protein_coding missense_variant MODERATE 193C>G Gln65Glu
M0075949 AMLGPLCJ_00003 2363 11 Skin 0.41 protein_coding missense_variant MODERATE 197G>A Arg66Gln
M0075950 AMLGPLCJ_00003 2366 13 Skin 0.48 protein_coding missense_variant MODERATE 200G>A Gly67Glu
M0075951 AMLGPLCJ_00003 2370 13 Skin 0.48 protein_coding synonymous_variant LOW 204G>A Ser68Ser
M0075952 AMLGPLCJ_00003 2372 10 Skin 0.37 protein_coding missense_variant MODERATE 206C>T Ser69Phe
M0075953 AMLGPLCJ_00003 2388 13 Skin 0.48 protein_coding synonymous_variant LOW 222C>T Thr74Thr
M0075954 AMLGPLCJ_00003 2398 8 Skin 0.30 protein_coding synonymous_variant LOW 232C>T Leu78Leu
M0075955 AMLGPLCJ_00003 2416 10 Skin 0.37 protein_coding missense_variant MODERATE 250A>G Asn84Asp
M0075956 AMLGPLCJ_00003 2427 9 Skin 0.33 protein_coding synonymous_variant LOW 261T>C Ala87Ala
M0075957 AMLGPLCJ_00003 2430 9 Skin 0.33 protein_coding synonymous_variant LOW 264C>G Gly88Gly
M0075958 AMLGPLCJ_00003 2435 10 Skin 0.37 protein_coding missense_variant MODERATE 269T>C Val90Ala
M0075959 AMLGPLCJ_00003 2436 10 Skin 0.37 protein_coding synonymous_variant LOW 270A>G Val90Val
M0075960 AMLGPLCJ_00003 2565 6 Skin 0.22 protein_coding synonymous_variant LOW 399A>G Ala133Ala
M0075961 AMLGPLCJ_00003 2627 10 Skin 0.37 protein_coding missense_variant MODERATE 461A>G Asn154Ser
M0075962 AMLGPLCJ_00003 2648 9 Skin 0.33 protein_coding missense_variant MODERATE 482C>A Ala161Glu
M0075963 AMLGPLCJ_00003 2658 8 Skin 0.30 protein_coding synonymous_variant LOW 492G>A Glu164Glu
M0075964 AMLGPLCJ_00003 2660 8 Skin 0.30 protein_coding missense_variant MODERATE 494C>A Ala165Glu
M0075965 AMLGPLCJ_00003 2662 8 Skin 0.30 protein_coding synonymous_variant LOW 496C>T Leu166Leu
M0075966 AMLGPLCJ_00003 2677 6 Skin 0.22 protein_coding missense_variant MODERATE 511A>T Thr171Ser
M0075967 AMLGPLCJ_00003 2720 6 Skin 0.22 protein_coding missense_variant MODERATE 554A>G Asp185Gly
M0075968 AMLGPLCJ_00003 2771 7 Skin 0.26 protein_coding missense_variant MODERATE 605A>T Gln202Leu
M0075969 AMLGPLCJ_00003 2784 7 Skin 0.26 protein_coding synonymous_variant LOW 618T>C Ser206Ser
M0075970 AMLGPLCJ_00003 2787 7 Skin 0.26 protein_coding synonymous_variant LOW 621T>C Ala207Ala
M0075971 AMLGPLCJ_00003 2800 7 Skin 0.26 protein_coding missense_variant MODERATE 634A>G Thr212Ala
M0075972 AMLGPLCJ_00003 2918 6 Skin 0.22 protein_coding missense_variant MODERATE 752G>A Arg251His
M0075973 AMLGPLCJ_00003 2919 6 Skin 0.22 protein_coding synonymous_variant LOW 753C>T Arg251Arg
M0075974 AMLGPLCJ_00003 2922 6 Skin 0.22 protein_coding synonymous_variant LOW 756A>G Thr252Thr
M0075975 AMLGPLCJ_00003 2925 6 Skin 0.22 protein_coding missense_variant MODERATE 759G>C Leu253Phe
M0075976 AMLGPLCJ_00003 2942 6 Skin 0.22 protein_coding missense_variant MODERATE 776A>G Asn259Ser
M0075977 AMLGPLCJ_00003 3000 10 Skin 0.37 protein_coding synonymous_variant LOW 834T>C Thr278Thr
M0075978 AMLGPLCJ_00003 3027 6 Skin 0.22 protein_coding synonymous_variant LOW 861A>C Ala287Ala
M0075979 AMLGPLCJ_00003 3029 6 Skin 0.22 protein_coding missense_variant MODERATE 863A>G Asp288Gly
M0075980 AMLGPLCJ_00003 3066 7 Skin 0.26 protein_coding synonymous_variant LOW 900T>C Ala300Ala
M0075981 AMLGPLCJ_00003 3117 7 Skin 0.26 protein_coding synonymous_variant LOW 951T>C Ala317Ala
M0075982 AMLGPLCJ_00003 3174 6 Skin 0.22 protein_coding missense_variant MODERATE 1008G>T Glu336Asp
M0075983 AMLGPLCJ_00003 3504 8 Skin 0.30 protein_coding synonymous_variant LOW 1338C>T Thr446Thr
M0075984 AMLGPLCJ_00003 3551 4 Skin 0.15 protein_coding missense_variant MODERATE 1385C>T Thr462Ile
M0075985 AMLGPLCJ_00003 3663 5 Skin 0.19 protein_coding synonymous_variant LOW 1497G>T Pro499Pro
M0075986 AMLGPLCJ_00001 193 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -48G>T None
M0075987 AMLGPLCJ_00001 199 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -42T>G None
M0075988 AMLGPLCJ_00003 2536 3 Skin 0.11 protein_coding synonymous_variant LOW 370T>C Leu124Leu
M0075989 AMLGPLCJ_00003 2557 3 Skin 0.11 protein_coding missense_variant MODERATE 391T>C Phe131Leu
M0075990 AMLGPLCJ_00003 2570 3 Skin 0.11 protein_coding missense_variant MODERATE 404A>G Lys135Arg
M0075991 AMLGPLCJ_00003 2580 4 Skin 0.15 protein_coding synonymous_variant LOW 414T>C Ser138Ser
M0075992 AMLGPLCJ_00003 2625 3 Skin 0.11 protein_coding synonymous_variant LOW 459A>G Glu153Glu
M0075993 AMLGPLCJ_00003 3762 4 Skin 0.15 protein_coding synonymous_variant LOW 1596C>T Thr532Thr
M0075994 AMLGPLCJ_00001 82 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -159C>T None
M0075995 AMLGPLCJ_00001 148 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -93C>T None
M0075996 AMLGPLCJ_00001 178 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -63T>G None
M0075997 AMLGPLCJ_00001 273 4 Skin 0.15 protein_coding synonymous_variant LOW 33T>C Ala11Ala
M0075998 AMLGPLCJ_00001 288 4 Skin 0.15 protein_coding synonymous_variant LOW 48A>G Val16Val
M0075999 AMLGPLCJ_00001 292 4 Skin 0.15 protein_coding missense_variant MODERATE 52T>C Ser18Pro
M0076000 AMLGPLCJ_00001 294 4 Skin 0.15 protein_coding synonymous_variant LOW 54C>T Ser18Ser
M0076001 AMLGPLCJ_00001 321 4 Skin 0.15 protein_coding synonymous_variant LOW 81G>A Ala27Ala
M0076002 AMLGPLCJ_00001 360 4 Skin 0.15 protein_coding synonymous_variant LOW 120T>C Ile40Ile
M0076003 AMLGPLCJ_00001 501 4 Skin 0.15 protein_coding synonymous_variant LOW 261T>C Leu87Leu
M0076004 AMLGPLCJ_00001 537 4 Skin 0.15 protein_coding synonymous_variant LOW 297A>G Val99Val
M0076005 AMLGPLCJ_00001 580 4 Skin 0.15 protein_coding missense_variant MODERATE 340A>G Thr114Ala
M0076006 AMLGPLCJ_00001 584 4 Skin 0.15 protein_coding missense_variant MODERATE 344A>C Asn115Thr
M0076007 AMLGPLCJ_00001 585 4 Skin 0.15 protein_coding synonymous_variant LOW 345C>T Asn115Asn
M0076008 AMLGPLCJ_00001 606 4 Skin 0.15 protein_coding synonymous_variant LOW 366T>C Ser122Ser
M0076009 AMLGPLCJ_00001 612 4 Skin 0.15 protein_coding synonymous_variant LOW 372A>T Ala124Ala
M0076010 AMLGPLCJ_00001 1084 4 Skin 0.15 protein_coding missense_variant MODERATE 844A>G Asn282Asp
M0076011 AMLGPLCJ_00001 1290 7 Skin 0.26 protein_coding synonymous_variant LOW 1050T>C Cys350Cys
M0076012 AMLGPLCJ_00002 1975 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -113G>A None
M0076013 AMLGPLCJ_00001 1339 6 Skin 0.22 protein_coding missense_variant MODERATE 1099T>G Ser367Ala
M0076014 AMLGPLCJ_00003 1443 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -724C>A None
M0076015 AMLGPLCJ_00003 1497 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -670C>T None
M0076016 AMLGPLCJ_00003 3315 4 Skin 0.15 protein_coding synonymous_variant LOW 1149C>T Gly383Gly
M0076017 AMLGPLCJ_00003 2379 3 Skin 0.11 protein_coding synonymous_variant LOW 213C>T Arg71Arg
M0076018 AMLGPLCJ_00001 285 3 Skin 0.11 protein_coding synonymous_variant LOW 45A>C Ala15Ala
M0076019 AMLGPLCJ_00001 525 3 Skin 0.11 protein_coding synonymous_variant LOW 285T>C Gly95Gly
M0076020 AMLGPLCJ_00003 3647 4 Skin 0.15 protein_coding missense_variant MODERATE 1481A>G Lys494Arg
M0076021 AMLGPLCJ_00002 6564 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4702C>G None
M0076022 AMLGPLCJ_00002 6582 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4720T>C None
M0076023 AMLGPLCJ_00002 6621 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4759T>C None
M0076024 AMLGPLCJ_00002 6702 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4840C>A None
M0076025 AMLGPLCJ_00002 6712 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4850G>A None
M0076026 AMLGPLCJ_00002 6747 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4885G>A None
M0076027 AMLGPLCJ_00007 6820 4 Skin 0.15 protein_coding missense_variant MODERATE 107A>C Asp36Ala
M0076028 AMLGPLCJ_00007 6873 4 Skin 0.15 protein_coding synonymous_variant LOW 54A>G Gly18Gly
M0076029 AMLGPLCJ_00007 6912 4 Skin 0.15 protein_coding synonymous_variant LOW 15G>A Gly5Gly
M0076030 AMLGPLCJ_00007 6921 3 Skin 0.11 protein_coding synonymous_variant LOW 6G>A Arg2Arg
M0076031 AMLGPLCJ_00007 6924 3 Skin 0.11 protein_coding start_lost HIGH 3G>A Met1?
M0076032 AMLGPLCJ_00005 4471 6 Skin 0.22 protein_coding missense_variant MODERATE 110G>A Gly37Glu
M0076033 AMLGPLCJ_00006 6027 5 Skin 0.19 protein_coding synonymous_variant LOW 240G>A Glu80Glu
M0076034 AMLGPLCJ_00002 6552 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4690C>T None
M0076035 AMLGPLCJ_00002 6555 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4693G>A None
M0076036 AMLGPLCJ_00002 6654 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4792G>A None
M0076037 AMLGPLCJ_00002 6678 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4816C>T None
M0076038 AMLGPLCJ_00002 4306 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2444C>G None
M0076039 AMLGPLCJ_00006 5928 3 Skin 0.11 protein_coding synonymous_variant LOW 339A>G Gly113Gly
M0076040 AMLGPLCJ_00003 2583 3 Skin 0.11 protein_coding synonymous_variant LOW 417C>T Arg139Arg
M0076041 AMLGPLCJ_00006 5991 4 Skin 0.15 protein_coding synonymous_variant LOW 276G>A Pro92Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term