Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3132
  Reference Plasmid   MET0225_bin.8_new__k81_23510
  Reference Plasmid Size   3539
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0076229 KCABJHOF_00001 273 3 Skin 0.60 protein_coding synonymous_variant LOW 678C>G Val226Val
M0076230 KCABJHOF_00001 285 3 Skin 0.60 protein_coding synonymous_variant LOW 666C>G Gly222Gly
M0076231 KCABJHOF_00001 309 3 Skin 0.60 protein_coding missense_variant MODERATE 642A>T Lys214Asn
M0076232 KCABJHOF_00001 318 3 Skin 0.60 protein_coding synonymous_variant LOW 633G>A Ala211Ala
M0076233 KCABJHOF_00001 339 4 Skin 0.80 protein_coding synonymous_variant LOW 612G>T Gly204Gly
M0076234 KCABJHOF_00001 441 4 Skin 0.80 protein_coding synonymous_variant LOW 510G>A Thr170Thr
M0076235 KCABJHOF_00001 444 4 Skin 0.80 protein_coding synonymous_variant LOW 507C>T Tyr169Tyr
M0076236 KCABJHOF_00001 504 4 Skin 0.80 protein_coding synonymous_variant LOW 447G>A Leu149Leu
M0076237 KCABJHOF_00001 546 4 Skin 0.80 protein_coding synonymous_variant LOW 405T>G Thr135Thr
M0076238 KCABJHOF_00001 558 4 Skin 0.80 protein_coding synonymous_variant LOW 393C>T Val131Val
M0076239 KCABJHOF_00001 585 4 Skin 0.80 protein_coding synonymous_variant LOW 366A>G Glu122Glu
M0076240 KCABJHOF_00001 669 3 Skin 0.60 protein_coding synonymous_variant LOW 282G>A Arg94Arg
M0076241 KCABJHOF_00001 702 4 Skin 0.80 protein_coding synonymous_variant LOW 249C>T Val83Val
M0076242 KCABJHOF_00001 705 4 Skin 0.80 protein_coding synonymous_variant LOW 246G>A Val82Val
M0076243 KCABJHOF_00001 822 4 Skin 0.80 protein_coding synonymous_variant LOW 129C>T Val43Val
M0076244 KCABJHOF_00001 826 4 Skin 0.80 protein_coding missense_variant MODERATE 125C>T Ser42Leu
M0076245 KCABJHOF_00001 832 4 Skin 0.80 protein_coding missense_variant MODERATE 119T>C Phe40Ser
M0076246 KCABJHOF_00001 1050 4 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -100C>T None
M0076247 KCABJHOF_00002 1654 3 Skin 0.60 protein_coding synonymous_variant LOW 555C>T Asn185Asn
M0076248 KCABJHOF_00002 1666 3 Skin 0.60 protein_coding synonymous_variant LOW 567A>G Gly189Gly
M0076249 KCABJHOF_00002 1681 3 Skin 0.60 protein_coding synonymous_variant LOW 582T>C Gly194Gly
M0076250 KCABJHOF_00002 1720 3 Skin 0.60 protein_coding synonymous_variant LOW 621A>G Glu207Glu
M0076251 KCABJHOF_00002 1735 3 Skin 0.60 protein_coding synonymous_variant LOW 636A>G Pro212Pro
M0076252 KCABJHOF_00002 1741 5 Skin 1.00 protein_coding synonymous_variant LOW 642T>C Arg214Arg
M0076253 KCABJHOF_00002 1756 3 Skin 0.60 protein_coding synonymous_variant LOW 657C>T Ile219Ile
M0076254 KCABJHOF_00002 1759 3 Skin 0.60 protein_coding synonymous_variant LOW 660G>C Ala220Ala
M0076255 KCABJHOF_00002 1768 3 Skin 0.60 protein_coding synonymous_variant LOW 669C>G Ser223Ser
M0076256 KCABJHOF_00002 1822 4 Skin 0.80 protein_coding synonymous_variant LOW 723T>C Phe241Phe
M0076257 KCABJHOF_00002 1855 4 Skin 0.80 protein_coding synonymous_variant LOW 756C>A Ile252Ile
M0076258 KCABJHOF_00002 1876 4 Skin 0.80 protein_coding synonymous_variant LOW 777A>C Gly259Gly
M0076259 KCABJHOF_00002 1882 4 Skin 0.80 protein_coding synonymous_variant LOW 783G>A Leu261Leu
M0076260 KCABJHOF_00002 1891 4 Skin 0.80 protein_coding synonymous_variant LOW 792C>T Arg264Arg
M0076261 KCABJHOF_00002 1912 4 Skin 0.80 protein_coding synonymous_variant LOW 813G>A Ala271Ala
M0076262 KCABJHOF_00002 1951 5 Skin 1.00 protein_coding synonymous_variant LOW 852A>G Lys284Lys
M0076263 KCABJHOF_00002 1978 5 Skin 1.00 protein_coding synonymous_variant LOW 879A>C Thr293Thr
M0076264 KCABJHOF_00002 2002 5 Skin 1.00 protein_coding synonymous_variant LOW 903C>T Val301Val
M0076265 KCABJHOF_00002 2209 4 Skin 0.80 protein_coding synonymous_variant LOW 1110T>C Ala370Ala
M0076266 KCABJHOF_00002 2269 3 Skin 0.60 protein_coding synonymous_variant LOW 1170A>G Val390Val
M0076267 KCABJHOF_00002 2275 4 Skin 0.80 protein_coding synonymous_variant LOW 1176T>C Val392Val
M0076268 KCABJHOF_00002 2386 4 Skin 0.80 protein_coding synonymous_variant LOW 1287C>T Ser429Ser
M0076269 KCABJHOF_00002 2389 4 Skin 0.80 protein_coding synonymous_variant LOW 1290A>G Glu430Glu
M0076270 KCABJHOF_00002 2395 4 Skin 0.80 protein_coding synonymous_variant LOW 1296G>A Ala432Ala
M0076271 KCABJHOF_00003 2533 4 Skin 0.80 protein_coding synonymous_variant LOW 55C>T Leu19Leu
M0076272 KCABJHOF_00003 2535 4 Skin 0.80 protein_coding synonymous_variant LOW 57A>C Leu19Leu
M0076273 KCABJHOF_00003 2543 3 Skin 0.60 protein_coding missense_variant MODERATE 65C>T Ser22Leu
M0076274 KCABJHOF_00003 2544 4 Skin 0.80 protein_coding synonymous_variant LOW 66G>T Ser22Ser
M0076275 KCABJHOF_00003 2550 4 Skin 0.80 protein_coding synonymous_variant LOW 72T>C Thr24Thr
M0076276 KCABJHOF_00003 2554 3 Skin 0.60 protein_coding missense_variant MODERATE 76G>T Ala26Ser
M0076277 KCABJHOF_00003 2589 3 Skin 0.60 protein_coding synonymous_variant LOW 111A>G Pro37Pro
M0076278 KCABJHOF_00003 2592 3 Skin 0.60 protein_coding synonymous_variant LOW 114G>A Glu38Glu
M0076279 KCABJHOF_00003 2637 3 Skin 0.60 protein_coding synonymous_variant LOW 159T>C Arg53Arg
M0076280 KCABJHOF_00003 2640 3 Skin 0.60 protein_coding synonymous_variant LOW 162C>A Ala54Ala
M0076281 KCABJHOF_00003 2641 3 Skin 0.60 protein_coding missense_variant MODERATE 163G>A Glu55Lys
M0076282 KCABJHOF_00003 2651 3 Skin 0.60 protein_coding missense_variant MODERATE 173A>G His58Arg
M0076283 KCABJHOF_00003 2661 3 Skin 0.60 protein_coding synonymous_variant LOW 183A>G Glu61Glu
M0076284 KCABJHOF_00003 2670 3 Skin 0.60 protein_coding synonymous_variant LOW 192T>G Leu64Leu
M0076285 KCABJHOF_00003 2688 3 Skin 0.60 protein_coding synonymous_variant LOW 210C>T Ala70Ala
M0076286 KCABJHOF_00003 2736 3 Skin 0.60 protein_coding synonymous_variant LOW 258A>G Thr86Thr
M0076287 KCABJHOF_00003 2739 3 Skin 0.60 protein_coding synonymous_variant LOW 261T>A Leu87Leu
M0076288 KCABJHOF_00003 2745 3 Skin 0.60 protein_coding synonymous_variant LOW 267A>T Ala89Ala
M0076289 KCABJHOF_00003 2776 3 Skin 0.60 protein_coding missense_variant MODERATE 298G>A Val100Ile
M0076290 KCABJHOF_00003 2802 3 Skin 0.60 protein_coding synonymous_variant LOW 324T>C Asp108Asp
M0076291 KCABJHOF_00003 2806 4 Skin 0.80 protein_coding missense_variant MODERATE 328A>G Met110Val
M0076292 KCABJHOF_00003 2817 4 Skin 0.80 protein_coding synonymous_variant LOW 339G>A Lys113Lys
M0076293 KCABJHOF_00003 2823 4 Skin 0.80 protein_coding synonymous_variant LOW 345T>A Ile115Ile
M0076294 KCABJHOF_00003 2856 3 Skin 0.60 protein_coding synonymous_variant LOW 378G>A Lys126Lys
M0076295 KCABJHOF_00003 2859 4 Skin 0.80 protein_coding synonymous_variant LOW 381T>C Ser127Ser
M0076296 KCABJHOF_00003 2901 3 Skin 0.60 protein_coding synonymous_variant LOW 423G>T Thr141Thr
M0076297 KCABJHOF_00003 2970 3 Skin 0.60 protein_coding synonymous_variant LOW 492G>A Glu164Glu
M0076298 KCABJHOF_00003 3015 3 Skin 0.60 protein_coding synonymous_variant LOW 537A>G Leu179Leu
M0076299 KCABJHOF_00003 3045 3 Skin 0.60 protein_coding synonymous_variant LOW 567C>A Gly189Gly
M0076300 KCABJHOF_00003 3114 3 Skin 0.60 protein_coding synonymous_variant LOW 636G>A Lys212Lys
M0076301 KCABJHOF_00004 3167 3 Skin 0.60 protein_coding synonymous_variant LOW 18C>T Thr6Thr
M0076302 KCABJHOF_00004 3176 3 Skin 0.60 protein_coding synonymous_variant LOW 27G>A Ala9Ala
M0076303 KCABJHOF_00004 3195 3 Skin 0.60 protein_coding missense_variant MODERATE 46G>A Ala16Thr
M0076304 KCABJHOF_00004 3209 3 Skin 0.60 protein_coding synonymous_variant LOW 60C>T Ala20Ala
M0076305 KCABJHOF_00004 3224 3 Skin 0.60 protein_coding synonymous_variant LOW 75A>G Pro25Pro
M0076306 KCABJHOF_00004 3233 3 Skin 0.60 protein_coding synonymous_variant LOW 84A>C Ala28Ala
M0076307 KCABJHOF_00004 3245 3 Skin 0.60 protein_coding synonymous_variant LOW 96C>T Thr32Thr
M0076308 KCABJHOF_00004 3254 3 Skin 0.60 protein_coding synonymous_variant LOW 105T>C Asp35Asp
M0076309 KCABJHOF_00004 3278 3 Skin 0.60 protein_coding synonymous_variant LOW 129G>A Val43Val
M0076310 KCABJHOF_00004 3314 3 Skin 0.60 protein_coding synonymous_variant LOW 165A>C Thr55Thr
M0076311 KCABJHOF_00004 3335 3 Skin 0.60 protein_coding synonymous_variant LOW 186C>A Pro62Pro
M0076312 KCABJHOF_00004 3338 3 Skin 0.60 protein_coding synonymous_variant LOW 189A>T Ala63Ala
M0076313 KCABJHOF_00001 483 3 Skin 0.60 protein_coding synonymous_variant LOW 468C>T Ala156Ala
M0076314 KCABJHOF_00001 501 3 Skin 0.60 protein_coding synonymous_variant LOW 450T>C Asp150Asp
M0076315 KCABJHOF_00001 570 3 Skin 0.60 protein_coding synonymous_variant LOW 381C>T Ser127Ser
M0076316 KCABJHOF_00002 1372 3 Skin 0.60 protein_coding synonymous_variant LOW 273G>A Gln91Gln
M0076317 KCABJHOF_00002 1402 3 Skin 0.60 protein_coding missense_variant MODERATE 303C>A His101Gln
M0076318 KCABJHOF_00002 1422 3 Skin 0.60 protein_coding missense_variant MODERATE 323G>A Gly108Glu
M0076319 KCABJHOF_00002 2104 3 Skin 0.60 protein_coding synonymous_variant LOW 1005T>C Thr335Thr
M0076320 KCABJHOF_00002 2317 3 Skin 0.60 protein_coding synonymous_variant LOW 1218C>T Asp406Asp
M0076321 KCABJHOF_00004 3437 3 Skin 0.60 protein_coding synonymous_variant LOW 288T>A Ala96Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term