Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3148
  Reference Plasmid   MET0259_bin.19_new__k81_228311
  Reference Plasmid Size   3707
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0133346 FFKCIBFF_00001 1522 8 Oral 0.38 protein_coding synonymous_variant LOW 1482C>T Val494Val
M0133347 FFKCIBFF_00001 1549 12 Oral 0.57 protein_coding missense_variant MODERATE 1509C>A Asp503Glu
M0133348 FFKCIBFF_00001 1747 4 Oral 0.19 protein_coding synonymous_variant LOW 1707C>T Asp569Asp
M0133349 FFKCIBFF_00001 1750 16 Oral 0.76 protein_coding synonymous_variant LOW 1710G>A Ala570Ala
M0133350 FFKCIBFF_00001 1780 13 Oral 0.62 protein_coding synonymous_variant LOW 1740C>T Ala580Ala
M0133351 FFKCIBFF_00001 1924 12 Oral 0.57 protein_coding synonymous_variant LOW 1884T>C Gly628Gly
M0133352 FFKCIBFF_00001 1927 5 Oral 0.24 protein_coding synonymous_variant LOW 1887G>C Ser629Ser
M0133353 FFKCIBFF_00001 2008 16 Oral 0.76 protein_coding synonymous_variant LOW 1968G>C Val656Val
M0133354 FFKCIBFF_00001 2071 4 Oral 0.19 protein_coding synonymous_variant LOW 2031G>A Leu677Leu
M0133355 FFKCIBFF_00001 2072 16 Oral 0.76 protein_coding synonymous_variant LOW 2032T>C Leu678Leu
M0133356 FFKCIBFF_00002 2115 15 Oral 0.71 protein_coding upstream_gene_variant MODIFIER -156C>T None
M0133357 FFKCIBFF_00002 2125 14 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -146C>T None
M0133358 FFKCIBFF_00002 2126 14 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -145T>C None
M0133359 FFKCIBFF_00002 2132 14 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -139C>T None
M0133360 FFKCIBFF_00002 2189 5 Oral 0.24 protein_coding upstream_gene_variant MODIFIER -82T>C None
M0133361 FFKCIBFF_00002 2336 20 Oral 0.95 protein_coding synonymous_variant LOW 66C>T Ala22Ala
M0133362 FFKCIBFF_00002 2363 13 Oral 0.62 protein_coding synonymous_variant LOW 93C>T Gly31Gly
M0133363 FFKCIBFF_00002 2372 14 Oral 0.67 protein_coding synonymous_variant LOW 102T>C Thr34Thr
M0133364 FFKCIBFF_00002 2399 9 Oral 0.43 protein_coding synonymous_variant LOW 129G>A Ala43Ala
M0133365 FFKCIBFF_00002 2408 18 Oral 0.86 protein_coding synonymous_variant LOW 138T>G Ser46Ser
M0133366 FFKCIBFF_00002 2429 18 Oral 0.86 protein_coding synonymous_variant LOW 159T>C Thr53Thr
M0133367 FFKCIBFF_00002 2438 13 Oral 0.62 protein_coding synonymous_variant LOW 168C>T Ser56Ser
M0133368 FFKCIBFF_00002 2446 6 Oral 0.29 protein_coding missense_variant MODERATE 176G>A Ser59Asn
M0133369 FFKCIBFF_00002 2489 18 Oral 0.86 protein_coding synonymous_variant LOW 219A>G Ala73Ala
M0133370 FFKCIBFF_00002 2513 19 Oral 0.90 protein_coding synonymous_variant LOW 243T>G Val81Val
M0133371 FFKCIBFF_00002 2522 19 Oral 0.90 protein_coding synonymous_variant LOW 252C>T Gly84Gly
M0133372 FFKCIBFF_00002 2523 19 Oral 0.90 protein_coding missense_variant MODERATE 253G>A Asp85Asn
M0133373 FFKCIBFF_00002 2543 3 Oral 0.14 protein_coding synonymous_variant LOW 273G>T Ala91Ala
M0133374 FFKCIBFF_00002 2546 14 Oral 0.67 protein_coding synonymous_variant LOW 276T>A Ala92Ala
M0133375 FFKCIBFF_00002 2642 11 Oral 0.52 protein_coding synonymous_variant LOW 372C>T Thr124Thr
M0133376 FFKCIBFF_00002 2675 3 Oral 0.14 protein_coding synonymous_variant LOW 405C>T Asp135Asp
M0133377 FFKCIBFF_00002 2696 12 Oral 0.57 protein_coding synonymous_variant LOW 426C>T Gly142Gly
M0133378 FFKCIBFF_00002 2699 8 Oral 0.38 protein_coding synonymous_variant LOW 429C>T Thr143Thr
M0133379 FFKCIBFF_00002 2717 18 Oral 0.86 protein_coding synonymous_variant LOW 447T>C Arg149Arg
M0133380 FFKCIBFF_00002 2729 3 Oral 0.14 protein_coding synonymous_variant LOW 459C>T Phe153Phe
M0133381 FFKCIBFF_00002 2834 12 Oral 0.57 protein_coding synonymous_variant LOW 564C>T Asn188Asn
M0133382 FFKCIBFF_00002 2906 3 Oral 0.14 protein_coding synonymous_variant LOW 636G>C Ser212Ser
M0133383 FFKCIBFF_00002 2987 15 Oral 0.71 protein_coding missense_variant MODERATE 717G>C Glu239Asp
M0133384 FFKCIBFF_00002 3002 12 Oral 0.57 protein_coding synonymous_variant LOW 732T>C Thr244Thr
M0133385 FFKCIBFF_00002 3056 7 Oral 0.33 protein_coding synonymous_variant LOW 786T>C Gly262Gly
M0133386 FFKCIBFF_00002 3144 19 Oral 0.90 protein_coding missense_variant MODERATE 874T>G Ser292Ala
M0133387 FFKCIBFF_00002 3147 19 Oral 0.90 protein_coding missense_variant MODERATE 877T>G Ser293Ala
M0133388 FFKCIBFF_00002 3150 3 Oral 0.14 protein_coding missense_variant MODERATE 880G>A Ala294Thr
M0133389 FFKCIBFF_00002 3161 8 Oral 0.38 protein_coding synonymous_variant LOW 891T>C Thr297Thr
M0133390 FFKCIBFF_00002 3182 19 Oral 0.90 protein_coding synonymous_variant LOW 912A>G Ser304Ser
M0133391 FFKCIBFF_00001 3345 7 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *1253G>A None
M0133392 FFKCIBFF_00001 3403 9 Oral 0.43 protein_coding downstream_gene_variant MODIFIER *1311T>C None
M0133393 FFKCIBFF_00001 3425 13 Oral 0.62 protein_coding downstream_gene_variant MODIFIER *1333T>C None
M0133394 FFKCIBFF_00001 1411 4 Oral 0.19 protein_coding synonymous_variant LOW 1371C>G Leu457Leu
M0133395 FFKCIBFF_00001 1453 9 Oral 0.43 protein_coding synonymous_variant LOW 1413T>C Arg471Arg
M0133396 FFKCIBFF_00001 1468 13 Oral 0.62 protein_coding synonymous_variant LOW 1428T>C Arg476Arg
M0133397 FFKCIBFF_00001 1489 13 Oral 0.62 protein_coding synonymous_variant LOW 1449T>C Ser483Ser
M0133398 FFKCIBFF_00001 1676 4 Oral 0.19 protein_coding missense_variant MODERATE 1636G>A Ala546Thr
M0133399 FFKCIBFF_00001 1677 4 Oral 0.19 protein_coding missense_variant MODERATE 1637C>G Ala546Gly
M0133400 FFKCIBFF_00001 1678 4 Oral 0.19 protein_coding synonymous_variant LOW 1638A>C Ala546Ala
M0133401 FFKCIBFF_00001 1687 4 Oral 0.19 protein_coding synonymous_variant LOW 1647G>C Thr549Thr
M0133402 FFKCIBFF_00001 1690 4 Oral 0.19 protein_coding synonymous_variant LOW 1650A>G Ala550Ala
M0133403 FFKCIBFF_00001 1693 4 Oral 0.19 protein_coding synonymous_variant LOW 1653T>G Pro551Pro
M0133404 FFKCIBFF_00001 1696 4 Oral 0.19 protein_coding synonymous_variant LOW 1656G>T Val552Val
M0133405 FFKCIBFF_00001 1821 9 Oral 0.43 protein_coding missense_variant MODERATE 1781A>G Asn594Ser
M0133406 FFKCIBFF_00001 1845 5 Oral 0.24 protein_coding missense_variant MODERATE 1805C>A Thr602Asn
M0133407 FFKCIBFF_00001 1847 8 Oral 0.38 protein_coding missense_variant MODERATE 1807G>C Val603Leu
M0133408 FFKCIBFF_00001 1942 8 Oral 0.38 protein_coding synonymous_variant LOW 1902T>A Ala634Ala
M0133409 FFKCIBFF_00001 1948 6 Oral 0.29 protein_coding synonymous_variant LOW 1908C>G Thr636Thr
M0133410 FFKCIBFF_00001 1965 6 Oral 0.29 protein_coding missense_variant MODERATE 1925C>T Thr642Ile
M0133411 FFKCIBFF_00002 2927 4 Oral 0.19 protein_coding synonymous_variant LOW 657C>T Gly219Gly
M0133412 FFKCIBFF_00002 3104 4 Oral 0.19 protein_coding synonymous_variant LOW 834C>G Ala278Ala
M0133413 FFKCIBFF_00002 3116 3 Oral 0.14 protein_coding synonymous_variant LOW 846G>A Ala282Ala
M0133414 FFKCIBFF_00002 3148 7 Oral 0.33 protein_coding missense_variant MODERATE 878C>T Ser293Phe
M0133415 FFKCIBFF_00001 3433 5 Oral 0.24 protein_coding downstream_gene_variant MODIFIER *1341C>T None
M0133416 FFKCIBFF_00001 1105 9 Oral 0.43 protein_coding synonymous_variant LOW 1065T>C Asp355Asp
M0133417 FFKCIBFF_00001 1275 3 Oral 0.14 protein_coding missense_variant MODERATE 1235G>T Gly412Val
M0133418 FFKCIBFF_00001 1279 3 Oral 0.14 protein_coding synonymous_variant LOW 1239C>T Asp413Asp
M0133419 FFKCIBFF_00001 1282 7 Oral 0.33 protein_coding synonymous_variant LOW 1242G>A Ala414Ala
M0133420 FFKCIBFF_00001 1306 16 Oral 0.76 protein_coding synonymous_variant LOW 1266G>A Glu422Glu
M0133421 FFKCIBFF_00001 1351 14 Oral 0.67 protein_coding synonymous_variant LOW 1311T>C Thr437Thr
M0133422 FFKCIBFF_00001 1402 9 Oral 0.43 protein_coding synonymous_variant LOW 1362G>A Ala454Ala
M0133423 FFKCIBFF_00002 2096 7 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -175C>T None
M0133424 FFKCIBFF_00002 2140 4 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -131T>C None
M0133425 FFKCIBFF_00002 2148 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -123T>C None
M0133426 FFKCIBFF_00002 2172 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -99T>C None
M0133427 FFKCIBFF_00002 3031 5 Oral 0.24 protein_coding missense_variant MODERATE 761A>C Glu254Ala
M0133428 FFKCIBFF_00002 3169 8 Oral 0.38 protein_coding missense_variant MODERATE 899A>G Asn300Ser
M0133429 FFKCIBFF_00002 3189 5 Oral 0.24 protein_coding missense_variant MODERATE 919G>A Gly307Ser
M0133430 FFKCIBFF_00002 3190 5 Oral 0.24 protein_coding missense_variant MODERATE 920G>A Gly307Asp
M0133431 FFKCIBFF_00002 3192 4 Oral 0.19 protein_coding missense_variant MODERATE 922G>T Ala308Ser
M0133432 FFKCIBFF_00002 3194 4 Oral 0.19 protein_coding synonymous_variant LOW 924G>C Ala308Ala
M0133433 FFKCIBFF_00001 3449 12 Oral 0.57 protein_coding downstream_gene_variant MODIFIER *1357A>G None
M0133434 FFKCIBFF_00001 3469 8 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *1377C>T None
M0133435 FFKCIBFF_00001 3470 8 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *1378G>T None
M0133436 FFKCIBFF_00001 69 9 Oral 0.43 protein_coding missense_variant MODERATE 29T>C Val10Ala
M0133437 FFKCIBFF_00001 121 3 Oral 0.14 protein_coding synonymous_variant LOW 81A>T Gly27Gly
M0133438 FFKCIBFF_00001 142 4 Oral 0.19 protein_coding synonymous_variant LOW 102T>C Thr34Thr
M0133439 FFKCIBFF_00001 143 4 Oral 0.19 protein_coding missense_variant MODERATE 103C>A Leu35Ile
M0133440 FFKCIBFF_00001 180 5 Oral 0.24 protein_coding missense_variant MODERATE 140A>C Glu47Ala
M0133441 FFKCIBFF_00001 181 5 Oral 0.24 protein_coding missense_variant MODERATE 141A>T Glu47Asp
M0133442 FFKCIBFF_00001 183 5 Oral 0.24 protein_coding missense_variant MODERATE 143C>A Ala48Asp
M0133443 FFKCIBFF_00001 191 5 Oral 0.24 protein_coding missense_variant MODERATE 151G>A Ala51Thr
M0133444 FFKCIBFF_00001 199 4 Oral 0.19 protein_coding synonymous_variant LOW 159C>G Thr53Thr
M0133445 FFKCIBFF_00001 355 6 Oral 0.29 protein_coding synonymous_variant LOW 315T>C Gly105Gly
M0133446 FFKCIBFF_00001 370 6 Oral 0.29 protein_coding synonymous_variant LOW 330A>G Ala110Ala
M0133447 FFKCIBFF_00001 381 6 Oral 0.29 protein_coding missense_variant MODERATE 341G>C Gly114Ala
M0133448 FFKCIBFF_00001 457 6 Oral 0.29 protein_coding synonymous_variant LOW 417A>G Glu139Glu
M0133449 FFKCIBFF_00001 529 5 Oral 0.24 protein_coding synonymous_variant LOW 489C>T Gly163Gly
M0133450 FFKCIBFF_00001 547 4 Oral 0.19 protein_coding synonymous_variant LOW 507C>T Gly169Gly
M0133451 FFKCIBFF_00001 590 5 Oral 0.24 protein_coding synonymous_variant LOW 550T>C Leu184Leu
M0133452 FFKCIBFF_00001 845 5 Oral 0.24 protein_coding missense_variant MODERATE 805A>G Thr269Ala
M0133453 FFKCIBFF_00001 879 7 Oral 0.33 protein_coding missense_variant MODERATE 839G>C Ser280Thr
M0133454 FFKCIBFF_00001 907 8 Oral 0.38 protein_coding synonymous_variant LOW 867C>T Gly289Gly
M0133455 FFKCIBFF_00001 946 9 Oral 0.43 protein_coding synonymous_variant LOW 906T>C Pro302Pro
M0133456 FFKCIBFF_00001 1046 8 Oral 0.38 protein_coding missense_variant MODERATE 1006G>A Val336Ile
M0133457 FFKCIBFF_00001 1049 8 Oral 0.38 protein_coding missense_variant MODERATE 1009A>G Ile337Val
M0133458 FFKCIBFF_00001 1060 9 Oral 0.43 protein_coding synonymous_variant LOW 1020T>C Asp340Asp
M0133459 FFKCIBFF_00001 1063 10 Oral 0.48 protein_coding synonymous_variant LOW 1023G>A Glu341Glu
M0133460 FFKCIBFF_00001 1072 8 Oral 0.38 protein_coding synonymous_variant LOW 1032T>C His344His
M0133461 FFKCIBFF_00001 1114 4 Oral 0.19 protein_coding synonymous_variant LOW 1074C>T Ala358Ala
M0133462 FFKCIBFF_00001 1135 7 Oral 0.33 protein_coding synonymous_variant LOW 1095C>G Ala365Ala
M0133463 FFKCIBFF_00001 1138 8 Oral 0.38 protein_coding synonymous_variant LOW 1098C>A Ala366Ala
M0133464 FFKCIBFF_00001 1246 3 Oral 0.14 protein_coding synonymous_variant LOW 1206C>G Thr402Thr
M0133465 FFKCIBFF_00001 1964 4 Oral 0.19 protein_coding missense_variant MODERATE 1924A>G Thr642Ala
M0133466 FFKCIBFF_00002 2492 3 Oral 0.14 protein_coding synonymous_variant LOW 222C>T Asn74Asn
M0133467 FFKCIBFF_00002 2540 3 Oral 0.14 protein_coding synonymous_variant LOW 270T>C Asp90Asp
M0133468 FFKCIBFF_00002 2585 5 Oral 0.24 protein_coding synonymous_variant LOW 315C>T Gly105Gly
M0133469 FFKCIBFF_00002 2610 3 Oral 0.14 protein_coding missense_variant MODERATE 340G>A Val114Ile
M0133470 FFKCIBFF_00001 1414 6 Oral 0.29 protein_coding synonymous_variant LOW 1374C>T Gly458Gly
M0133471 FFKCIBFF_00001 1684 3 Oral 0.14 protein_coding synonymous_variant LOW 1644C>T Ser548Ser
M0133472 FFKCIBFF_00001 2044 4 Oral 0.19 protein_coding synonymous_variant LOW 2004C>T Gly668Gly
M0133473 FFKCIBFF_00002 2411 4 Oral 0.19 protein_coding synonymous_variant LOW 141C>T Thr47Thr
M0133474 FFKCIBFF_00002 2423 7 Oral 0.33 protein_coding synonymous_variant LOW 153T>C Ser51Ser
M0133475 FFKCIBFF_00002 2435 5 Oral 0.24 protein_coding synonymous_variant LOW 165C>T Ser55Ser
M0133476 FFKCIBFF_00002 2918 6 Oral 0.29 protein_coding synonymous_variant LOW 648T>C Gly216Gly
M0133477 FFKCIBFF_00001 3423 4 Oral 0.19 protein_coding downstream_gene_variant MODIFIER *1331T>C None
M0133478 FFKCIBFF_00001 1297 4 Oral 0.19 protein_coding synonymous_variant LOW 1257C>T Asn419Asn
M0133479 FFKCIBFF_00001 1528 3 Oral 0.14 protein_coding synonymous_variant LOW 1488C>T His496His
M0133480 FFKCIBFF_00001 1669 4 Oral 0.19 protein_coding synonymous_variant LOW 1629C>G Pro543Pro
M0133481 FFKCIBFF_00001 1864 4 Oral 0.19 protein_coding synonymous_variant LOW 1824C>T Ala608Ala
M0133482 FFKCIBFF_00001 1954 4 Oral 0.19 protein_coding synonymous_variant LOW 1914A>G Ala638Ala
M0133483 FFKCIBFF_00001 3643 4 Oral 0.19 protein_coding downstream_gene_variant MODIFIER *1551C>G None
M0133484 FFKCIBFF_00001 1663 3 Oral 0.14 protein_coding synonymous_variant LOW 1623G>A Glu541Glu
M0133485 FFKCIBFF_00001 2059 3 Oral 0.14 protein_coding synonymous_variant LOW 2019T>C Ala673Ala
M0133486 FFKCIBFF_00002 2480 3 Oral 0.14 protein_coding synonymous_variant LOW 210C>T Gly70Gly
M0133487 FFKCIBFF_00001 289 3 Oral 0.14 protein_coding synonymous_variant LOW 249A>C Ala83Ala
M0133488 FFKCIBFF_00001 391 3 Oral 0.14 protein_coding missense_variant MODERATE 351G>T Lys117Asn
M0133489 FFKCIBFF_00001 145 3 Oral 0.14 protein_coding synonymous_variant LOW 105C>T Leu35Leu
M0133490 FFKCIBFF_00001 148 3 Oral 0.14 protein_coding synonymous_variant LOW 108A>T Ala36Ala
M0133491 FFKCIBFF_00001 150 3 Oral 0.14 protein_coding missense_variant MODERATE 110T>A Phe37Tyr
M0133492 FFKCIBFF_00001 157 3 Oral 0.14 protein_coding synonymous_variant LOW 117T>C Asp39Asp
M0133493 FFKCIBFF_00001 160 3 Oral 0.14 protein_coding synonymous_variant LOW 120T>C Thr40Thr
M0133494 FFKCIBFF_00001 202 3 Oral 0.14 protein_coding synonymous_variant LOW 162C>T Ile54Ile
M0133495 FFKCIBFF_00001 40 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -1A>C None
M0133496 FFKCIBFF_00001 137 3 Oral 0.14 protein_coding missense_variant MODERATE 97A>T Thr33Ser
M0133497 FFKCIBFF_00001 238 4 Oral 0.19 protein_coding synonymous_variant LOW 198A>G Leu66Leu
M0133498 FFKCIBFF_00001 520 3 Oral 0.14 protein_coding synonymous_variant LOW 480T>C Gly160Gly
M0133499 FFKCIBFF_00001 808 3 Oral 0.14 protein_coding missense_variant MODERATE 768C>G Asp256Glu
M0133500 FFKCIBFF_00001 811 3 Oral 0.14 protein_coding synonymous_variant LOW 771C>G Pro257Pro
M0133501 FFKCIBFF_00001 817 3 Oral 0.14 protein_coding synonymous_variant LOW 777G>C Pro259Pro
M0133502 FFKCIBFF_00001 853 3 Oral 0.14 protein_coding synonymous_variant LOW 813T>C Ala271Ala
M0133503 FFKCIBFF_00001 856 3 Oral 0.14 protein_coding synonymous_variant LOW 816C>T Asp272Asp
M0133504 FFKCIBFF_00001 858 3 Oral 0.14 protein_coding missense_variant MODERATE 818G>A Gly273Asp
M0133505 FFKCIBFF_00001 1633 3 Oral 0.14 protein_coding synonymous_variant LOW 1593C>T Ala531Ala
M0133506 FFKCIBFF_00002 2420 3 Oral 0.14 protein_coding synonymous_variant LOW 150C>T Thr50Thr
M0133507 FFKCIBFF_00002 2945 3 Oral 0.14 protein_coding synonymous_variant LOW 675A>G Ala225Ala
M0133508 FFKCIBFF_00001 3406 3 Oral 0.14 protein_coding downstream_gene_variant MODIFIER *1314G>C None
M0133509 FFKCIBFF_00001 3407 3 Oral 0.14 protein_coding downstream_gene_variant MODIFIER *1315G>T None
M0133510 FFKCIBFF_00002 2858 3 Oral 0.14 protein_coding synonymous_variant LOW 588A>G Ser196Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term