Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3169
  Reference Plasmid   MET0293_bin.22__k81_71648
  Reference Plasmid Size   11737
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0077388 HMDBHFBK_00004 4423 6 Skin 0.35 protein_coding synonymous_variant LOW 279C>T Cys93Cys
M0077389 HMDBHFBK_00004 4435 6 Skin 0.35 protein_coding synonymous_variant LOW 267G>C Val89Val
M0077390 HMDBHFBK_00004 4444 6 Skin 0.35 protein_coding synonymous_variant LOW 258C>T Val86Val
M0077391 HMDBHFBK_00007 7715 6 Skin 0.35 protein_coding synonymous_variant LOW 1467G>C Arg489Arg
M0077392 HMDBHFBK_00007 9068 5 Skin 0.29 protein_coding synonymous_variant LOW 114A>G Gln38Gln
M0077393 HMDBHFBK_00007 9131 5 Skin 0.29 protein_coding synonymous_variant LOW 51A>T Leu17Leu
M0077394 HMDBHFBK_00003 4208 4 Skin 0.24 protein_coding synonymous_variant LOW 2649T>C Gly883Gly
M0077395 HMDBHFBK_00001 4253 4 Skin 0.24 protein_coding downstream_gene_variant MODIFIER *3704T>C None
M0077396 HMDBHFBK_00004 4366 6 Skin 0.35 protein_coding synonymous_variant LOW 336T>C Asn112Asn
M0077397 HMDBHFBK_00004 4740 5 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -39A>G None
M0077398 HMDBHFBK_00005 4798 6 Skin 0.35 protein_coding synonymous_variant LOW 1209C>T Asn403Asn
M0077399 HMDBHFBK_00005 4840 5 Skin 0.29 protein_coding synonymous_variant LOW 1167T>C Tyr389Tyr
M0077400 HMDBHFBK_00005 4886 6 Skin 0.35 protein_coding missense_variant MODERATE 1121A>G Asn374Ser
M0077401 HMDBHFBK_00005 4921 6 Skin 0.35 protein_coding synonymous_variant LOW 1086A>C Arg362Arg
M0077402 HMDBHFBK_00005 4924 5 Skin 0.29 protein_coding synonymous_variant LOW 1083A>G Glu361Glu
M0077403 HMDBHFBK_00005 4954 5 Skin 0.29 protein_coding synonymous_variant LOW 1053A>G Ala351Ala
M0077404 HMDBHFBK_00005 4966 6 Skin 0.35 protein_coding synonymous_variant LOW 1041T>A Arg347Arg
M0077405 HMDBHFBK_00005 4969 6 Skin 0.35 protein_coding synonymous_variant LOW 1038T>A Gly346Gly
M0077406 HMDBHFBK_00005 5014 5 Skin 0.29 protein_coding synonymous_variant LOW 993A>G Lys331Lys
M0077407 HMDBHFBK_00005 5020 5 Skin 0.29 protein_coding synonymous_variant LOW 987C>T Asp329Asp
M0077408 HMDBHFBK_00005 5289 4 Skin 0.24 protein_coding missense_variant MODERATE 718C>T Pro240Ser
M0077409 HMDBHFBK_00005 5449 5 Skin 0.29 protein_coding synonymous_variant LOW 558G>A Ala186Ala
M0077410 HMDBHFBK_00005 5467 5 Skin 0.29 protein_coding synonymous_variant LOW 540G>A Glu180Glu
M0077411 HMDBHFBK_00005 5535 5 Skin 0.29 protein_coding missense_variant MODERATE 472T>G Leu158Val
M0077412 HMDBHFBK_00005 5663 4 Skin 0.24 protein_coding missense_variant MODERATE 344G>C Gly115Ala
M0077413 HMDBHFBK_00005 5671 4 Skin 0.24 protein_coding synonymous_variant LOW 336T>G Gly112Gly
M0077414 HMDBHFBK_00005 5708 5 Skin 0.29 protein_coding missense_variant MODERATE 299C>T Ala100Val
M0077415 HMDBHFBK_00005 5710 5 Skin 0.29 protein_coding synonymous_variant LOW 297T>C Thr99Thr
M0077416 HMDBHFBK_00005 5711 4 Skin 0.24 protein_coding missense_variant MODERATE 296C>G Thr99Ser
M0077417 HMDBHFBK_00005 5749 5 Skin 0.29 protein_coding synonymous_variant LOW 258T>C Ser86Ser
M0077418 HMDBHFBK_00005 5812 5 Skin 0.29 protein_coding synonymous_variant LOW 195G>C Thr65Thr
M0077419 HMDBHFBK_00005 5827 4 Skin 0.24 protein_coding synonymous_variant LOW 180A>C Ala60Ala
M0077420 HMDBHFBK_00005 5922 4 Skin 0.24 protein_coding synonymous_variant LOW 85C>T Leu29Leu
M0077421 HMDBHFBK_00005 5923 4 Skin 0.24 protein_coding synonymous_variant LOW 84A>G Glu28Glu
M0077422 HMDBHFBK_00005 5929 4 Skin 0.24 protein_coding synonymous_variant LOW 78T>C Ser26Ser
M0077423 HMDBHFBK_00005 5932 4 Skin 0.24 protein_coding synonymous_variant LOW 75C>T Ser25Ser
M0077424 HMDBHFBK_00005 5943 5 Skin 0.29 protein_coding missense_variant MODERATE 64G>A Val22Ile
M0077425 HMDBHFBK_00005 5948 4 Skin 0.24 protein_coding missense_variant MODERATE 59G>A Ser20Asn
M0077426 HMDBHFBK_00005 5950 5 Skin 0.29 protein_coding synonymous_variant LOW 57A>G Gly19Gly
M0077427 HMDBHFBK_00005 5961 5 Skin 0.29 protein_coding missense_variant MODERATE 46A>G Ile16Val
M0077428 HMDBHFBK_00005 5967 5 Skin 0.29 protein_coding missense_variant MODERATE 40G>A Gly14Ser
M0077429 HMDBHFBK_00005 5973 5 Skin 0.29 protein_coding missense_variant MODERATE 34T>C Phe12Leu
M0077430 HMDBHFBK_00005 5986 5 Skin 0.29 protein_coding synonymous_variant LOW 21T>C Tyr7Tyr
M0077431 HMDBHFBK_00005 5991 5 Skin 0.29 protein_coding missense_variant MODERATE 16G>A Val6Met
M0077432 HMDBHFBK_00004 6007 5 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1306T>C None
M0077433 HMDBHFBK_00004 6053 4 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -1352C>A None
M0077434 HMDBHFBK_00004 6064 4 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -1363G>A None
M0077435 HMDBHFBK_00004 6074 5 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1373G>A None
M0077436 HMDBHFBK_00006 6209 4 Skin 0.24 protein_coding synonymous_variant LOW 1020T>C Tyr340Tyr
M0077437 HMDBHFBK_00006 6212 5 Skin 0.29 protein_coding synonymous_variant LOW 1017C>T Gly339Gly
M0077438 HMDBHFBK_00006 6230 5 Skin 0.29 protein_coding synonymous_variant LOW 999A>G Leu333Leu
M0077439 HMDBHFBK_00006 6245 5 Skin 0.29 protein_coding missense_variant MODERATE 984T>A Asp328Glu
M0077440 HMDBHFBK_00006 6284 5 Skin 0.29 protein_coding synonymous_variant LOW 945C>T Val315Val
M0077441 HMDBHFBK_00006 6299 5 Skin 0.29 protein_coding synonymous_variant LOW 930C>T Leu310Leu
M0077442 HMDBHFBK_00006 6303 5 Skin 0.29 protein_coding missense_variant MODERATE 926A>G Gln309Arg
M0077443 HMDBHFBK_00006 6350 5 Skin 0.29 protein_coding synonymous_variant LOW 879C>T Ala293Ala
M0077444 HMDBHFBK_00006 6614 4 Skin 0.24 protein_coding synonymous_variant LOW 615C>A Ala205Ala
M0077445 HMDBHFBK_00006 6633 3 Skin 0.18 protein_coding missense_variant MODERATE 596A>G Lys199Arg
M0077446 HMDBHFBK_00006 6887 4 Skin 0.24 protein_coding synonymous_variant LOW 342C>G Val114Val
M0077447 HMDBHFBK_00006 6896 3 Skin 0.18 protein_coding synonymous_variant LOW 333T>C Pro111Pro
M0077448 HMDBHFBK_00006 6947 4 Skin 0.24 protein_coding synonymous_variant LOW 282G>A Ser94Ser
M0077449 HMDBHFBK_00006 6953 4 Skin 0.24 protein_coding synonymous_variant LOW 276A>G Leu92Leu
M0077450 HMDBHFBK_00006 6971 4 Skin 0.24 protein_coding synonymous_variant LOW 258T>C Ile86Ile
M0077451 HMDBHFBK_00006 6977 4 Skin 0.24 protein_coding synonymous_variant LOW 252G>T Val84Val
M0077452 HMDBHFBK_00004 7290 4 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -2589G>C None
M0077453 HMDBHFBK_00007 7319 3 Skin 0.18 protein_coding synonymous_variant LOW 1863T>A Pro621Pro
M0077454 HMDBHFBK_00007 7402 4 Skin 0.24 protein_coding missense_variant MODERATE 1780G>A Gly594Ser
M0077455 HMDBHFBK_00007 7403 4 Skin 0.24 protein_coding synonymous_variant LOW 1779G>A Gln593Gln
M0077456 HMDBHFBK_00007 7457 4 Skin 0.24 protein_coding synonymous_variant LOW 1725T>C Thr575Thr
M0077457 HMDBHFBK_00007 7481 4 Skin 0.24 protein_coding synonymous_variant LOW 1701A>G Arg567Arg
M0077458 HMDBHFBK_00007 7583 4 Skin 0.24 protein_coding synonymous_variant LOW 1599G>A Lys533Lys
M0077459 HMDBHFBK_00007 7614 4 Skin 0.24 protein_coding missense_variant MODERATE 1568C>T Ala523Val
M0077460 HMDBHFBK_00007 7616 4 Skin 0.24 protein_coding synonymous_variant LOW 1566C>T Asp522Asp
M0077461 HMDBHFBK_00002 1313 3 Skin 0.18 protein_coding missense_variant MODERATE 772A>G Asn258Asp
M0077462 HMDBHFBK_00002 1361 3 Skin 0.18 protein_coding missense_variant MODERATE 820C>A His274Asn
M0077463 HMDBHFBK_00002 1363 3 Skin 0.18 protein_coding missense_variant MODERATE 822C>A His274Gln
M0077464 HMDBHFBK_00002 1381 3 Skin 0.18 protein_coding synonymous_variant LOW 840C>T Arg280Arg
M0077465 HMDBHFBK_00002 1520 4 Skin 0.24 protein_coding missense_variant MODERATE 979T>C Phe327Leu
M0077466 HMDBHFBK_00003 1539 3 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -21C>T None
M0077467 HMDBHFBK_00003 1586 3 Skin 0.18 protein_coding synonymous_variant LOW 27C>T Asn9Asn
M0077468 HMDBHFBK_00003 1610 4 Skin 0.24 protein_coding synonymous_variant LOW 51G>A Leu17Leu
M0077469 HMDBHFBK_00003 1673 3 Skin 0.18 protein_coding synonymous_variant LOW 114C>T Ser38Ser
M0077470 HMDBHFBK_00003 1853 4 Skin 0.24 protein_coding synonymous_variant LOW 294A>G Lys98Lys
M0077471 HMDBHFBK_00003 1889 3 Skin 0.18 protein_coding synonymous_variant LOW 330T>C Asn110Asn
M0077472 HMDBHFBK_00003 1892 3 Skin 0.18 protein_coding synonymous_variant LOW 333C>T Tyr111Tyr
M0077473 HMDBHFBK_00003 1895 3 Skin 0.18 protein_coding synonymous_variant LOW 336C>A Thr112Thr
M0077474 HMDBHFBK_00003 1901 3 Skin 0.18 protein_coding synonymous_variant LOW 342G>A Glu114Glu
M0077475 HMDBHFBK_00003 1906 3 Skin 0.18 protein_coding missense_variant MODERATE 347C>T Ala116Val
M0077476 HMDBHFBK_00003 1913 3 Skin 0.18 protein_coding synonymous_variant LOW 354C>T Ala118Ala
M0077477 HMDBHFBK_00003 1926 4 Skin 0.24 protein_coding missense_variant MODERATE 367C>A His123Asn
M0077478 HMDBHFBK_00003 1931 4 Skin 0.24 protein_coding synonymous_variant LOW 372A>G Thr124Thr
M0077479 HMDBHFBK_00003 1934 4 Skin 0.24 protein_coding synonymous_variant LOW 375G>T Pro125Pro
M0077480 HMDBHFBK_00003 1984 4 Skin 0.24 protein_coding missense_variant MODERATE 425T>C Leu142Pro
M0077481 HMDBHFBK_00003 1988 4 Skin 0.24 protein_coding synonymous_variant LOW 429G>A Glu143Glu
M0077482 HMDBHFBK_00003 1989 4 Skin 0.24 protein_coding missense_variant MODERATE 430C>A His144Asn
M0077483 HMDBHFBK_00003 2014 4 Skin 0.24 protein_coding missense_variant MODERATE 455T>G Val152Gly
M0077484 HMDBHFBK_00003 2028 3 Skin 0.18 protein_coding missense_variant MODERATE 469G>A Ala157Thr
M0077485 HMDBHFBK_00003 2042 3 Skin 0.18 protein_coding synonymous_variant LOW 483G>A Gly161Gly
M0077486 HMDBHFBK_00003 2084 3 Skin 0.18 protein_coding synonymous_variant LOW 525G>A Gln175Gln
M0077487 HMDBHFBK_00003 2090 4 Skin 0.24 protein_coding synonymous_variant LOW 531C>T Tyr177Tyr
M0077488 HMDBHFBK_00003 2261 4 Skin 0.24 protein_coding synonymous_variant LOW 702G>C Thr234Thr
M0077489 HMDBHFBK_00003 2273 4 Skin 0.24 protein_coding synonymous_variant LOW 714G>C Leu238Leu
M0077490 HMDBHFBK_00003 2351 4 Skin 0.24 protein_coding synonymous_variant LOW 792A>G Ser264Ser
M0077491 HMDBHFBK_00003 2402 4 Skin 0.24 protein_coding synonymous_variant LOW 843G>A Pro281Pro
M0077492 HMDBHFBK_00003 2438 4 Skin 0.24 protein_coding synonymous_variant LOW 879A>C Gly293Gly
M0077493 HMDBHFBK_00003 2484 4 Skin 0.24 protein_coding missense_variant MODERATE 925A>G Asn309Asp
M0077494 HMDBHFBK_00003 2490 5 Skin 0.29 protein_coding missense_variant MODERATE 931G>A Asp311Asn
M0077495 HMDBHFBK_00003 2620 5 Skin 0.29 protein_coding missense_variant MODERATE 1061G>A Gly354Asp
M0077496 HMDBHFBK_00003 2837 4 Skin 0.24 protein_coding synonymous_variant LOW 1278G>A Ala426Ala
M0077497 HMDBHFBK_00003 2888 4 Skin 0.24 protein_coding synonymous_variant LOW 1329T>C Ala443Ala
M0077498 HMDBHFBK_00007 8480 3 Skin 0.18 protein_coding synonymous_variant LOW 702G>A Thr234Thr
M0077499 HMDBHFBK_00007 8486 4 Skin 0.24 protein_coding synonymous_variant LOW 696A>C Pro232Pro
M0077500 HMDBHFBK_00007 8615 4 Skin 0.24 protein_coding synonymous_variant LOW 567C>T Cys189Cys
M0077501 HMDBHFBK_00007 8653 4 Skin 0.24 protein_coding missense_variant MODERATE 529A>G Ile177Val
M0077502 HMDBHFBK_00007 8671 4 Skin 0.24 protein_coding missense_variant MODERATE 511G>A Ala171Thr
M0077503 HMDBHFBK_00007 8675 4 Skin 0.24 protein_coding synonymous_variant LOW 507G>T Thr169Thr
M0077504 HMDBHFBK_00007 8691 5 Skin 0.29 protein_coding missense_variant MODERATE 491A>G Asn164Ser
M0077505 HMDBHFBK_00007 8702 5 Skin 0.29 protein_coding synonymous_variant LOW 480T>A Gly160Gly
M0077506 HMDBHFBK_00007 8717 4 Skin 0.24 protein_coding synonymous_variant LOW 465C>T Val155Val
M0077507 HMDBHFBK_00007 8719 4 Skin 0.24 protein_coding missense_variant MODERATE 463G>A Val155Ile
M0077508 HMDBHFBK_00007 8732 5 Skin 0.29 protein_coding synonymous_variant LOW 450T>C Leu150Leu
M0077509 HMDBHFBK_00007 8735 5 Skin 0.29 protein_coding synonymous_variant LOW 447C>A Val149Val
M0077510 HMDBHFBK_00007 8759 5 Skin 0.29 protein_coding synonymous_variant LOW 423A>T Gly141Gly
M0077511 HMDBHFBK_00007 8829 5 Skin 0.29 protein_coding missense_variant MODERATE 353C>G Ala118Gly
M0077512 HMDBHFBK_00007 8834 5 Skin 0.29 protein_coding synonymous_variant LOW 348A>G Ser116Ser
M0077513 HMDBHFBK_00007 8852 5 Skin 0.29 protein_coding synonymous_variant LOW 330T>G Leu110Leu
M0077514 HMDBHFBK_00007 8915 3 Skin 0.18 protein_coding synonymous_variant LOW 267G>A Gln89Gln
M0077515 HMDBHFBK_00007 8965 3 Skin 0.18 protein_coding missense_variant MODERATE 217G>C Val73Leu
M0077516 HMDBHFBK_00007 9113 3 Skin 0.18 protein_coding synonymous_variant LOW 69G>A Glu23Glu
M0077517 HMDBHFBK_00007 9115 3 Skin 0.18 protein_coding missense_variant MODERATE 67G>C Glu23Gln
M0077518 HMDBHFBK_00008 9363 3 Skin 0.18 protein_coding synonymous_variant LOW 1380G>A Lys460Lys
M0077519 HMDBHFBK_00008 9459 3 Skin 0.18 protein_coding synonymous_variant LOW 1284A>G Ser428Ser
M0077520 HMDBHFBK_00008 9471 3 Skin 0.18 protein_coding synonymous_variant LOW 1272G>A Lys424Lys
M0077521 HMDBHFBK_00008 9474 3 Skin 0.18 protein_coding synonymous_variant LOW 1269C>T Ala423Ala
M0077522 HMDBHFBK_00008 9588 3 Skin 0.18 protein_coding synonymous_variant LOW 1155T>C Cys385Cys
M0077523 HMDBHFBK_00008 9591 3 Skin 0.18 protein_coding synonymous_variant LOW 1152C>A Val384Val
M0077524 HMDBHFBK_00008 9594 3 Skin 0.18 protein_coding synonymous_variant LOW 1149A>T Pro383Pro
M0077525 HMDBHFBK_00008 9612 3 Skin 0.18 protein_coding synonymous_variant LOW 1131C>T Arg377Arg
M0077526 HMDBHFBK_00008 9620 3 Skin 0.18 protein_coding synonymous_variant LOW 1123C>T Leu375Leu
M0077527 HMDBHFBK_00008 9642 3 Skin 0.18 protein_coding synonymous_variant LOW 1101G>A Leu367Leu
M0077528 HMDBHFBK_00008 9651 3 Skin 0.18 protein_coding synonymous_variant LOW 1092G>A Thr364Thr
M0077529 HMDBHFBK_00008 9687 4 Skin 0.24 protein_coding synonymous_variant LOW 1056A>G Leu352Leu
M0077530 HMDBHFBK_00008 9708 4 Skin 0.24 protein_coding synonymous_variant LOW 1035C>T Ile345Ile
M0077531 HMDBHFBK_00008 9709 4 Skin 0.24 protein_coding missense_variant MODERATE 1034T>G Ile345Ser
M0077532 HMDBHFBK_00008 9713 4 Skin 0.24 protein_coding missense_variant MODERATE 1030A>C Lys344Gln
M0077533 HMDBHFBK_00008 9714 4 Skin 0.24 protein_coding synonymous_variant LOW 1029A>T Ala343Ala
M0077534 HMDBHFBK_00008 9723 4 Skin 0.24 protein_coding synonymous_variant LOW 1020T>C Leu340Leu
M0077535 HMDBHFBK_00008 9836 4 Skin 0.24 protein_coding missense_variant MODERATE 907A>G Lys303Glu
M0077536 HMDBHFBK_00008 10317 3 Skin 0.18 protein_coding synonymous_variant LOW 426G>T Val142Val
M0077537 HMDBHFBK_00008 10359 4 Skin 0.24 protein_coding synonymous_variant LOW 384C>T Val128Val
M0077538 HMDBHFBK_00008 10380 4 Skin 0.24 protein_coding synonymous_variant LOW 363C>A Gly121Gly
M0077539 HMDBHFBK_00008 10392 4 Skin 0.24 protein_coding synonymous_variant LOW 351C>T Thr117Thr
M0077540 HMDBHFBK_00008 10418 4 Skin 0.24 protein_coding synonymous_variant LOW 325C>T Leu109Leu
M0077541 HMDBHFBK_00009 11313 3 Skin 0.18 protein_coding synonymous_variant LOW 300C>A Leu100Leu
M0077542 HMDBHFBK_00009 11315 3 Skin 0.18 protein_coding missense_variant MODERATE 298C>T Leu100Phe
M0077543 HMDBHFBK_00003 3144 3 Skin 0.18 protein_coding synonymous_variant LOW 1585C>T Leu529Leu
M0077544 HMDBHFBK_00003 3182 4 Skin 0.24 protein_coding synonymous_variant LOW 1623C>T Tyr541Tyr
M0077545 HMDBHFBK_00003 3197 4 Skin 0.24 protein_coding synonymous_variant LOW 1638G>A Pro546Pro
M0077546 HMDBHFBK_00003 3248 3 Skin 0.18 protein_coding synonymous_variant LOW 1689C>T Asp563Asp
M0077547 HMDBHFBK_00003 3257 3 Skin 0.18 protein_coding synonymous_variant LOW 1698A>G Gln566Gln
M0077548 HMDBHFBK_00003 3269 3 Skin 0.18 protein_coding synonymous_variant LOW 1710C>T Val570Val
M0077549 HMDBHFBK_00003 3377 4 Skin 0.24 protein_coding synonymous_variant LOW 1818T>C Ser606Ser
M0077550 HMDBHFBK_00003 3404 4 Skin 0.24 protein_coding synonymous_variant LOW 1845G>A Ala615Ala
M0077551 HMDBHFBK_00003 3405 4 Skin 0.24 protein_coding synonymous_variant LOW 1846T>C Leu616Leu
M0077552 HMDBHFBK_00003 3449 4 Skin 0.24 protein_coding synonymous_variant LOW 1890T>C Ile630Ile
M0077553 HMDBHFBK_00003 3470 4 Skin 0.24 protein_coding synonymous_variant LOW 1911A>T Pro637Pro
M0077554 HMDBHFBK_00003 3473 4 Skin 0.24 protein_coding synonymous_variant LOW 1914T>C Arg638Arg
M0077555 HMDBHFBK_00003 3482 4 Skin 0.24 protein_coding synonymous_variant LOW 1923A>G Glu641Glu
M0077556 HMDBHFBK_00003 3500 4 Skin 0.24 protein_coding synonymous_variant LOW 1941T>C Gly647Gly
M0077557 HMDBHFBK_00003 3536 3 Skin 0.18 protein_coding synonymous_variant LOW 1977G>A Leu659Leu
M0077558 HMDBHFBK_00003 3563 3 Skin 0.18 protein_coding synonymous_variant LOW 2004A>G Arg668Arg
M0077559 HMDBHFBK_00003 3569 4 Skin 0.24 protein_coding synonymous_variant LOW 2010C>T Gly670Gly
M0077560 HMDBHFBK_00003 3620 4 Skin 0.24 protein_coding synonymous_variant LOW 2061C>T Ile687Ile
M0077561 HMDBHFBK_00003 3662 4 Skin 0.24 protein_coding synonymous_variant LOW 2103T>C Phe701Phe
M0077562 HMDBHFBK_00003 3734 4 Skin 0.24 protein_coding synonymous_variant LOW 2175T>G Val725Val
M0077563 HMDBHFBK_00003 3965 3 Skin 0.18 protein_coding synonymous_variant LOW 2406T>C Pro802Pro
M0077564 HMDBHFBK_00003 4007 3 Skin 0.18 protein_coding synonymous_variant LOW 2448C>T Asp816Asp
M0077565 HMDBHFBK_00007 7790 3 Skin 0.18 protein_coding synonymous_variant LOW 1392C>A Gly464Gly
M0077566 HMDBHFBK_00007 7796 4 Skin 0.24 protein_coding synonymous_variant LOW 1386G>A Thr462Thr
M0077567 HMDBHFBK_00007 7814 3 Skin 0.18 protein_coding synonymous_variant LOW 1368A>G Val456Val
M0077568 HMDBHFBK_00007 7820 4 Skin 0.24 protein_coding synonymous_variant LOW 1362T>C Arg454Arg
M0077569 HMDBHFBK_00007 7943 3 Skin 0.18 protein_coding synonymous_variant LOW 1239C>T Gly413Gly
M0077570 HMDBHFBK_00007 7970 3 Skin 0.18 protein_coding synonymous_variant LOW 1212C>T Gly404Gly
M0077571 HMDBHFBK_00007 7982 3 Skin 0.18 protein_coding synonymous_variant LOW 1200T>C Tyr400Tyr
M0077572 HMDBHFBK_00007 8018 3 Skin 0.18 protein_coding synonymous_variant LOW 1164C>A Thr388Thr
M0077573 HMDBHFBK_00007 8027 5 Skin 0.29 protein_coding synonymous_variant LOW 1155C>T Cys385Cys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term