Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3170
  Reference Plasmid   MET0293_bin.22__k81_84934
  Reference Plasmid Size   65588
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0077574 BGGLBHJA_00045 51231 3 Skin 0.14 protein_coding synonymous_variant LOW 645G>A Thr215Thr
M0077575 BGGLBHJA_00045 51273 3 Skin 0.14 protein_coding synonymous_variant LOW 603C>A Val201Val
M0077576 BGGLBHJA_00045 51303 3 Skin 0.14 protein_coding synonymous_variant LOW 573A>G Ser191Ser
M0077577 BGGLBHJA_00045 51477 3 Skin 0.14 protein_coding synonymous_variant LOW 399G>A Gln133Gln
M0077578 BGGLBHJA_00045 51564 3 Skin 0.14 protein_coding synonymous_variant LOW 312C>A Val104Val
M0077579 BGGLBHJA_00045 51837 3 Skin 0.14 protein_coding synonymous_variant LOW 39T>C Ile13Ile
M0077580 BGGLBHJA_00045 51850 3 Skin 0.14 protein_coding missense_variant MODERATE 26G>A Arg9His
M0077581 BGGLBHJA_00021 26331 3 Skin 0.14 protein_coding synonymous_variant LOW 276G>A Ala92Ala
M0077582 BGGLBHJA_00021 26340 3 Skin 0.14 protein_coding synonymous_variant LOW 285T>C Pro95Pro
M0077583 BGGLBHJA_00021 26343 3 Skin 0.14 protein_coding synonymous_variant LOW 288C>A Leu96Leu
M0077584 BGGLBHJA_00021 26346 3 Skin 0.14 protein_coding synonymous_variant LOW 291T>C Asn97Asn
M0077585 BGGLBHJA_00021 26454 4 Skin 0.19 protein_coding synonymous_variant LOW 399A>G Pro133Pro
M0077586 BGGLBHJA_00021 26457 4 Skin 0.19 protein_coding synonymous_variant LOW 402A>C Thr134Thr
M0077587 BGGLBHJA_00021 26467 4 Skin 0.19 protein_coding synonymous_variant LOW 412C>T Leu138Leu
M0077588 BGGLBHJA_00021 26547 3 Skin 0.14 protein_coding synonymous_variant LOW 492T>C Ala164Ala
M0077589 BGGLBHJA_00021 26641 3 Skin 0.14 protein_coding missense_variant MODERATE 586A>G Thr196Ala
M0077590 BGGLBHJA_00022 27356 4 Skin 0.19 protein_coding synonymous_variant LOW 159A>G Gly53Gly
M0077591 BGGLBHJA_00022 27362 4 Skin 0.19 protein_coding synonymous_variant LOW 165G>C Leu55Leu
M0077592 BGGLBHJA_00022 27418 4 Skin 0.19 protein_coding missense_variant MODERATE 221A>G Gln74Arg
M0077593 BGGLBHJA_00022 27425 3 Skin 0.14 protein_coding synonymous_variant LOW 228T>C Ala76Ala
M0077594 BGGLBHJA_00022 27494 4 Skin 0.19 protein_coding synonymous_variant LOW 297G>A Glu99Glu
M0077595 BGGLBHJA_00022 27515 3 Skin 0.14 protein_coding synonymous_variant LOW 318T>C His106His
M0077596 BGGLBHJA_00022 27632 4 Skin 0.19 protein_coding synonymous_variant LOW 435C>G Gly145Gly
M0077597 BGGLBHJA_00022 27644 3 Skin 0.14 protein_coding synonymous_variant LOW 447A>G Leu149Leu
M0077598 BGGLBHJA_00022 27677 4 Skin 0.19 protein_coding synonymous_variant LOW 480A>G Pro160Pro
M0077599 BGGLBHJA_00022 27719 3 Skin 0.14 protein_coding synonymous_variant LOW 522A>G Ala174Ala
M0077600 BGGLBHJA_00022 27725 3 Skin 0.14 protein_coding synonymous_variant LOW 528T>G Ser176Ser
M0077601 BGGLBHJA_00023 28046 3 Skin 0.14 protein_coding missense_variant MODERATE 841T>G Tyr281Asp
M0077602 BGGLBHJA_00023 28230 3 Skin 0.14 protein_coding synonymous_variant LOW 657A>G Gln219Gln
M0077603 BGGLBHJA_00024 28938 4 Skin 0.19 protein_coding missense_variant MODERATE 1038T>A Asp346Glu
M0077604 BGGLBHJA_00024 28942 4 Skin 0.19 protein_coding missense_variant MODERATE 1034C>A Pro345His
M0077605 BGGLBHJA_00024 29081 3 Skin 0.14 protein_coding synonymous_variant LOW 895C>T Leu299Leu
M0077606 BGGLBHJA_00024 29544 4 Skin 0.19 protein_coding synonymous_variant LOW 432C>T Tyr144Tyr
M0077607 BGGLBHJA_00024 29670 5 Skin 0.24 protein_coding missense_variant MODERATE 306G>T Met102Ile
M0077608 BGGLBHJA_00024 29672 5 Skin 0.24 protein_coding missense_variant MODERATE 304A>T Met102Leu
M0077609 BGGLBHJA_00024 29682 5 Skin 0.24 protein_coding synonymous_variant LOW 294C>T Val98Val
M0077610 BGGLBHJA_00024 29685 5 Skin 0.24 protein_coding synonymous_variant LOW 291T>C Ala97Ala
M0077611 BGGLBHJA_00024 29688 5 Skin 0.24 protein_coding synonymous_variant LOW 288C>T Tyr96Tyr
M0077612 BGGLBHJA_00024 29691 5 Skin 0.24 protein_coding synonymous_variant LOW 285T>C Ser95Ser
M0077613 BGGLBHJA_00023 30083 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1197C>T None
M0077614 BGGLBHJA_00023 30211 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1325G>C None
M0077615 BGGLBHJA_00025 30523 3 Skin 0.14 protein_coding synonymous_variant LOW 219T>C Val73Val
M0077616 BGGLBHJA_00025 30655 3 Skin 0.14 protein_coding synonymous_variant LOW 351G>A Leu117Leu
M0077617 BGGLBHJA_00025 30877 4 Skin 0.19 protein_coding synonymous_variant LOW 573A>T Thr191Thr
M0077618 BGGLBHJA_00025 30937 3 Skin 0.14 protein_coding synonymous_variant LOW 633G>A Leu211Leu
M0077619 BGGLBHJA_00025 30940 3 Skin 0.14 protein_coding synonymous_variant LOW 636T>A Gly212Gly
M0077620 BGGLBHJA_00025 31399 4 Skin 0.19 protein_coding synonymous_variant LOW 1095G>T Ser365Ser
M0077621 BGGLBHJA_00025 31633 3 Skin 0.14 protein_coding synonymous_variant LOW 1329G>C Ala443Ala
M0077622 BGGLBHJA_00025 31657 3 Skin 0.14 protein_coding synonymous_variant LOW 1353G>A Gly451Gly
M0077623 BGGLBHJA_00026 31905 3 Skin 0.14 protein_coding synonymous_variant LOW 66T>C Ala22Ala
M0077624 BGGLBHJA_00026 31998 4 Skin 0.19 protein_coding synonymous_variant LOW 159C>A Ala53Ala
M0077625 BGGLBHJA_00026 32109 4 Skin 0.19 protein_coding synonymous_variant LOW 270T>C His90His
M0077626 BGGLBHJA_00026 32139 3 Skin 0.14 protein_coding synonymous_variant LOW 300G>A Leu100Leu
M0077627 BGGLBHJA_00026 32239 4 Skin 0.19 protein_coding missense_variant MODERATE 400G>C Val134Leu
M0077628 BGGLBHJA_00026 32320 4 Skin 0.19 protein_coding missense_variant MODERATE 481G>A Ala161Thr
M0077629 BGGLBHJA_00026 32358 4 Skin 0.19 protein_coding synonymous_variant LOW 519G>C Val173Val
M0077630 BGGLBHJA_00026 32494 3 Skin 0.14 protein_coding missense_variant MODERATE 655G>A Val219Ile
M0077631 BGGLBHJA_00026 32496 3 Skin 0.14 protein_coding synonymous_variant LOW 657T>A Val219Val
M0077632 BGGLBHJA_00026 32520 3 Skin 0.14 protein_coding synonymous_variant LOW 681A>G Gln227Gln
M0077633 BGGLBHJA_00026 32754 3 Skin 0.14 protein_coding synonymous_variant LOW 915C>T Gly305Gly
M0077634 BGGLBHJA_00026 32859 5 Skin 0.24 protein_coding missense_variant MODERATE 1020A>G Ile340Met
M0077635 BGGLBHJA_00026 32883 3 Skin 0.14 protein_coding synonymous_variant LOW 1044A>G Leu348Leu
M0077636 BGGLBHJA_00023 33197 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4311A>G None
M0077637 BGGLBHJA_00023 33359 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4473T>C None
M0077638 BGGLBHJA_00023 33440 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4554C>A None
M0077639 BGGLBHJA_00023 33453 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4567C>T None
M0077640 BGGLBHJA_00027 33769 3 Skin 0.14 protein_coding synonymous_variant LOW 669C>T Pro223Pro
M0077641 BGGLBHJA_00027 33852 3 Skin 0.14 protein_coding synonymous_variant LOW 586T>C Leu196Leu
M0077642 BGGLBHJA_00027 34024 3 Skin 0.14 protein_coding synonymous_variant LOW 414G>A Gly138Gly
M0077643 BGGLBHJA_00024 34553 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4578G>A None
M0077644 BGGLBHJA_00024 34556 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4581G>A None
M0077645 BGGLBHJA_00024 34579 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4604C>T None
M0077646 BGGLBHJA_00024 34625 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4650G>A None
M0077647 BGGLBHJA_00024 34653 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4678A>G None
M0077648 BGGLBHJA_00029 35122 5 Skin 0.24 protein_coding synonymous_variant LOW 87A>G Gly29Gly
M0077649 BGGLBHJA_00029 35170 6 Skin 0.29 protein_coding synonymous_variant LOW 135T>C Val45Val
M0077650 BGGLBHJA_00029 35201 6 Skin 0.29 protein_coding synonymous_variant LOW 166A>C Arg56Arg
M0077651 BGGLBHJA_00029 35214 6 Skin 0.29 protein_coding missense_variant MODERATE 179A>C Glu60Ala
M0077652 BGGLBHJA_00030 35378 3 Skin 0.14 protein_coding missense_variant MODERATE 26C>A Pro9Gln
M0077653 BGGLBHJA_00030 35454 4 Skin 0.19 protein_coding synonymous_variant LOW 102A>C Ala34Ala
M0077654 BGGLBHJA_00030 35463 4 Skin 0.19 protein_coding synonymous_variant LOW 111C>G Val37Val
M0077655 BGGLBHJA_00030 35520 4 Skin 0.19 protein_coding synonymous_variant LOW 168A>G Leu56Leu
M0077656 BGGLBHJA_00030 35553 5 Skin 0.24 protein_coding synonymous_variant LOW 201G>C Gly67Gly
M0077657 BGGLBHJA_00030 35559 5 Skin 0.24 protein_coding synonymous_variant LOW 207C>T Arg69Arg
M0077658 BGGLBHJA_00030 35761 3 Skin 0.14 protein_coding missense_variant MODERATE 409A>G Thr137Ala
M0077659 BGGLBHJA_00030 35808 3 Skin 0.14 protein_coding synonymous_variant LOW 456A>T Ser152Ser
M0077660 BGGLBHJA_00030 35835 5 Skin 0.24 protein_coding synonymous_variant LOW 483C>G Val161Val
M0077661 BGGLBHJA_00030 36104 3 Skin 0.14 protein_coding missense_variant MODERATE 752T>C Val251Ala
M0077662 BGGLBHJA_00030 36105 3 Skin 0.14 protein_coding synonymous_variant LOW 753G>A Val251Val
M0077663 BGGLBHJA_00030 36273 3 Skin 0.14 protein_coding synonymous_variant LOW 921G>A Ala307Ala
M0077664 BGGLBHJA_00031 36632 3 Skin 0.14 protein_coding synonymous_variant LOW 216G>T Ser72Ser
M0077665 BGGLBHJA_00031 36686 3 Skin 0.14 protein_coding synonymous_variant LOW 270A>G Leu90Leu
M0077666 BGGLBHJA_00031 36708 3 Skin 0.14 protein_coding missense_variant MODERATE 292T>A Ser98Thr
M0077667 BGGLBHJA_00031 36764 4 Skin 0.19 protein_coding synonymous_variant LOW 348C>G Val116Val
M0077668 BGGLBHJA_00031 36770 3 Skin 0.14 protein_coding synonymous_variant LOW 354C>A Thr118Thr
M0077669 BGGLBHJA_00031 36848 3 Skin 0.14 protein_coding synonymous_variant LOW 432C>T Ile144Ile
M0077670 BGGLBHJA_00031 36953 4 Skin 0.19 protein_coding synonymous_variant LOW 537C>G Leu179Leu
M0077671 BGGLBHJA_00031 36980 3 Skin 0.14 protein_coding synonymous_variant LOW 564T>A Thr188Thr
M0077672 BGGLBHJA_00031 37178 4 Skin 0.19 protein_coding synonymous_variant LOW 762C>T Asn254Asn
M0077673 BGGLBHJA_00027 37187 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -2750G>T None
M0077674 BGGLBHJA_00032 37570 3 Skin 0.14 protein_coding synonymous_variant LOW 378T>A Thr126Thr
M0077675 BGGLBHJA_00032 37660 3 Skin 0.14 protein_coding synonymous_variant LOW 468G>T Val156Val
M0077676 BGGLBHJA_00032 37669 3 Skin 0.14 protein_coding synonymous_variant LOW 477C>T Phe159Phe
M0077677 BGGLBHJA_00032 37672 3 Skin 0.14 protein_coding synonymous_variant LOW 480G>T Thr160Thr
M0077678 BGGLBHJA_00032 37837 5 Skin 0.24 protein_coding synonymous_variant LOW 645T>C Val215Val
M0077679 BGGLBHJA_00032 37849 5 Skin 0.24 protein_coding synonymous_variant LOW 657A>G Val219Val
M0077680 BGGLBHJA_00032 37861 5 Skin 0.24 protein_coding synonymous_variant LOW 669T>C His223His
M0077681 BGGLBHJA_00032 37900 4 Skin 0.19 protein_coding synonymous_variant LOW 708C>T Asp236Asp
M0077682 BGGLBHJA_00032 38032 4 Skin 0.19 protein_coding synonymous_variant LOW 840C>T Arg280Arg
M0077683 BGGLBHJA_00032 38108 4 Skin 0.19 protein_coding missense_variant MODERATE 916A>G Ile306Val
M0077684 BGGLBHJA_00032 38125 3 Skin 0.14 protein_coding synonymous_variant LOW 933C>T Gly311Gly
M0077685 BGGLBHJA_00033 38328 3 Skin 0.14 protein_coding synonymous_variant LOW 175C>T Leu59Leu
M0077686 BGGLBHJA_00033 38419 3 Skin 0.14 protein_coding missense_variant MODERATE 266T>A Leu89Gln
M0077687 BGGLBHJA_00033 38573 6 Skin 0.29 protein_coding synonymous_variant LOW 420G>T Leu140Leu
M0077688 BGGLBHJA_00033 38594 5 Skin 0.24 protein_coding synonymous_variant LOW 441A>G Ala147Ala
M0077689 BGGLBHJA_00033 38639 4 Skin 0.19 protein_coding synonymous_variant LOW 486G>A Ala162Ala
M0077690 BGGLBHJA_00033 38732 3 Skin 0.14 protein_coding missense_variant MODERATE 579T>G Asp193Glu
M0077691 BGGLBHJA_00033 38750 3 Skin 0.14 protein_coding synonymous_variant LOW 597T>G Gly199Gly
M0077692 BGGLBHJA_00033 38807 5 Skin 0.24 protein_coding synonymous_variant LOW 654C>G Thr218Thr
M0077693 BGGLBHJA_00033 38858 3 Skin 0.14 protein_coding synonymous_variant LOW 705G>A Val235Val
M0077694 BGGLBHJA_00033 38864 6 Skin 0.29 protein_coding synonymous_variant LOW 711C>T Gly237Gly
M0077695 BGGLBHJA_00033 38963 5 Skin 0.24 protein_coding synonymous_variant LOW 810T>C Asp270Asp
M0077696 BGGLBHJA_00033 39062 5 Skin 0.24 protein_coding synonymous_variant LOW 909A>C Ser303Ser
M0077697 BGGLBHJA_00033 39155 3 Skin 0.14 protein_coding synonymous_variant LOW 1002A>C Pro334Pro
M0077698 BGGLBHJA_00033 39257 4 Skin 0.19 protein_coding synonymous_variant LOW 1104C>T Asn368Asn
M0077699 BGGLBHJA_00034 39702 4 Skin 0.19 protein_coding synonymous_variant LOW 270C>T Ser90Ser
M0077700 BGGLBHJA_00034 39723 5 Skin 0.24 protein_coding synonymous_variant LOW 291A>G Leu97Leu
M0077701 BGGLBHJA_00034 39747 3 Skin 0.14 protein_coding synonymous_variant LOW 315G>C Thr105Thr
M0077702 BGGLBHJA_00034 39769 5 Skin 0.24 protein_coding synonymous_variant LOW 337T>C Leu113Leu
M0077703 BGGLBHJA_00034 39816 5 Skin 0.24 protein_coding synonymous_variant LOW 384T>G Ala128Ala
M0077704 BGGLBHJA_00034 39855 3 Skin 0.14 protein_coding synonymous_variant LOW 423A>G Gln141Gln
M0077705 BGGLBHJA_00034 39953 3 Skin 0.14 protein_coding missense_variant MODERATE 521C>G Thr174Ser
M0077706 BGGLBHJA_00034 39957 3 Skin 0.14 protein_coding synonymous_variant LOW 525T>G Thr175Thr
M0077707 BGGLBHJA_00034 39981 3 Skin 0.14 protein_coding synonymous_variant LOW 549T>C Thr183Thr
M0077708 BGGLBHJA_00034 40179 4 Skin 0.19 protein_coding synonymous_variant LOW 747C>T Ser249Ser
M0077709 BGGLBHJA_00034 40251 4 Skin 0.19 protein_coding synonymous_variant LOW 819G>A Pro273Pro
M0077710 BGGLBHJA_00034 40279 4 Skin 0.19 protein_coding missense_variant MODERATE 847A>G Ile283Val
M0077711 BGGLBHJA_00034 40290 3 Skin 0.14 protein_coding synonymous_variant LOW 858A>G Val286Val
M0077712 BGGLBHJA_00034 40440 3 Skin 0.14 protein_coding synonymous_variant LOW 1008A>G Val336Val
M0077713 BGGLBHJA_00035 40666 6 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -28T>C None
M0077714 BGGLBHJA_00035 41053 4 Skin 0.19 protein_coding synonymous_variant LOW 360G>A Thr120Thr
M0077715 BGGLBHJA_00035 41068 4 Skin 0.19 protein_coding synonymous_variant LOW 375T>C Arg125Arg
M0077716 BGGLBHJA_00035 41092 3 Skin 0.14 protein_coding synonymous_variant LOW 399A>C Gly133Gly
M0077717 BGGLBHJA_00035 41116 4 Skin 0.19 protein_coding synonymous_variant LOW 423T>G Pro141Pro
M0077718 BGGLBHJA_00036 41346 4 Skin 0.19 protein_coding synonymous_variant LOW 66G>A Lys22Lys
M0077719 BGGLBHJA_00036 41352 4 Skin 0.19 protein_coding synonymous_variant LOW 72C>T Ser24Ser
M0077720 BGGLBHJA_00036 41392 5 Skin 0.24 protein_coding synonymous_variant LOW 112T>C Leu38Leu
M0077721 BGGLBHJA_00036 41394 5 Skin 0.24 protein_coding synonymous_variant LOW 114A>G Leu38Leu
M0077722 BGGLBHJA_00036 41406 3 Skin 0.14 protein_coding synonymous_variant LOW 126C>T Ser42Ser
M0077723 BGGLBHJA_00036 41412 5 Skin 0.24 protein_coding synonymous_variant LOW 132A>C Gly44Gly
M0077724 BGGLBHJA_00036 41413 5 Skin 0.24 protein_coding missense_variant MODERATE 133T>G Ser45Ala
M0077725 BGGLBHJA_00036 41415 5 Skin 0.24 protein_coding synonymous_variant LOW 135A>G Ser45Ser
M0077726 BGGLBHJA_00036 41418 5 Skin 0.24 protein_coding synonymous_variant LOW 138G>T Gly46Gly
M0077727 BGGLBHJA_00036 41427 5 Skin 0.24 protein_coding synonymous_variant LOW 147T>C Val49Val
M0077728 BGGLBHJA_00036 41430 5 Skin 0.24 protein_coding missense_variant MODERATE 150A>C Lys50Asn
M0077729 BGGLBHJA_00036 41463 4 Skin 0.19 protein_coding synonymous_variant LOW 183T>C Ile61Ile
M0077730 BGGLBHJA_00036 41502 4 Skin 0.19 protein_coding synonymous_variant LOW 222T>C Ala74Ala
M0077731 BGGLBHJA_00036 41520 5 Skin 0.24 protein_coding synonymous_variant LOW 240G>T Pro80Pro
M0077732 BGGLBHJA_00036 41550 5 Skin 0.24 protein_coding synonymous_variant LOW 270A>G Ala90Ala
M0077733 BGGLBHJA_00036 41625 5 Skin 0.24 protein_coding synonymous_variant LOW 345T>C Ala115Ala
M0077734 BGGLBHJA_00036 41646 5 Skin 0.24 protein_coding missense_variant MODERATE 366T>G Asp122Glu
M0077735 BGGLBHJA_00036 41647 5 Skin 0.24 protein_coding missense_variant MODERATE 367G>T Asp123Tyr
M0077736 BGGLBHJA_00036 41676 5 Skin 0.24 protein_coding synonymous_variant LOW 396C>T Val132Val
M0077737 BGGLBHJA_00036 41772 5 Skin 0.24 protein_coding synonymous_variant LOW 492G>A Ala164Ala
M0077738 BGGLBHJA_00036 41961 3 Skin 0.14 protein_coding synonymous_variant LOW 681T>C Ser227Ser
M0077739 BGGLBHJA_00037 42183 4 Skin 0.19 protein_coding synonymous_variant LOW 63G>A Leu21Leu
M0077740 BGGLBHJA_00037 42318 4 Skin 0.19 protein_coding synonymous_variant LOW 198C>T Asn66Asn
M0077741 BGGLBHJA_00037 42354 4 Skin 0.19 protein_coding missense_variant MODERATE 234T>A His78Gln
M0077742 BGGLBHJA_00037 42357 4 Skin 0.19 protein_coding synonymous_variant LOW 237A>C Thr79Thr
M0077743 BGGLBHJA_00037 42507 3 Skin 0.14 protein_coding synonymous_variant LOW 387G>A Leu129Leu
M0077744 BGGLBHJA_00037 42509 4 Skin 0.19 protein_coding missense_variant MODERATE 389T>A Val130Asp
M0077745 BGGLBHJA_00037 42627 4 Skin 0.19 protein_coding synonymous_variant LOW 507T>C Thr169Thr
M0077746 BGGLBHJA_00037 42634 4 Skin 0.19 protein_coding synonymous_variant LOW 514C>T Leu172Leu
M0077747 BGGLBHJA_00037 42702 3 Skin 0.14 protein_coding synonymous_variant LOW 582A>T Ala194Ala
M0077748 BGGLBHJA_00037 42807 4 Skin 0.19 protein_coding synonymous_variant LOW 687C>T Gly229Gly
M0077749 BGGLBHJA_00037 42834 4 Skin 0.19 protein_coding synonymous_variant LOW 714A>G Leu238Leu
M0077750 BGGLBHJA_00038 43000 4 Skin 0.19 protein_coding synonymous_variant LOW 117A>G Glu39Glu
M0077751 BGGLBHJA_00038 43135 4 Skin 0.19 protein_coding synonymous_variant LOW 252C>A Ala84Ala
M0077752 BGGLBHJA_00038 43141 4 Skin 0.19 protein_coding synonymous_variant LOW 258A>C Val86Val
M0077753 BGGLBHJA_00038 43153 4 Skin 0.19 protein_coding synonymous_variant LOW 270C>T Ala90Ala
M0077754 BGGLBHJA_00038 43220 4 Skin 0.19 protein_coding missense_variant MODERATE 337A>T Ile113Phe
M0077755 BGGLBHJA_00038 43429 3 Skin 0.14 protein_coding synonymous_variant LOW 546A>G Val182Val
M0077756 BGGLBHJA_00038 43450 3 Skin 0.14 protein_coding synonymous_variant LOW 567T>C Arg189Arg
M0077757 BGGLBHJA_00038 43456 3 Skin 0.14 protein_coding synonymous_variant LOW 573T>C Ala191Ala
M0077758 BGGLBHJA_00038 43459 3 Skin 0.14 protein_coding synonymous_variant LOW 576A>G Ala192Ala
M0077759 BGGLBHJA_00038 43543 4 Skin 0.19 protein_coding synonymous_variant LOW 660T>C Thr220Thr
M0077760 BGGLBHJA_00038 43575 4 Skin 0.19 protein_coding missense_variant MODERATE 692T>C Ile231Thr
M0077761 BGGLBHJA_00039 43869 3 Skin 0.14 protein_coding synonymous_variant LOW 138C>T Ala46Ala
M0077762 BGGLBHJA_00039 43917 4 Skin 0.19 protein_coding synonymous_variant LOW 186C>A Pro62Pro
M0077763 BGGLBHJA_00039 43972 4 Skin 0.19 protein_coding missense_variant MODERATE 241A>G Asn81Asp
M0077764 BGGLBHJA_00039 44046 5 Skin 0.24 protein_coding synonymous_variant LOW 315A>G Ala105Ala
M0077765 BGGLBHJA_00039 44085 5 Skin 0.24 protein_coding synonymous_variant LOW 354T>A Thr118Thr
M0077766 BGGLBHJA_00039 44130 3 Skin 0.14 protein_coding synonymous_variant LOW 399C>A Thr133Thr
M0077767 BGGLBHJA_00039 44133 3 Skin 0.14 protein_coding missense_variant MODERATE 402C>A Phe134Leu
M0077768 BGGLBHJA_00039 44262 4 Skin 0.19 protein_coding synonymous_variant LOW 531C>T Ala177Ala
M0077769 BGGLBHJA_00039 44268 4 Skin 0.19 protein_coding synonymous_variant LOW 537A>G Ser179Ser
M0077770 BGGLBHJA_00039 44274 4 Skin 0.19 protein_coding synonymous_variant LOW 543C>T Ile181Ile
M0077771 BGGLBHJA_00039 44286 3 Skin 0.14 protein_coding synonymous_variant LOW 555A>G Leu185Leu
M0077772 BGGLBHJA_00039 44331 3 Skin 0.14 protein_coding synonymous_variant LOW 600C>T Ser200Ser
M0077773 BGGLBHJA_00039 44688 3 Skin 0.14 protein_coding synonymous_variant LOW 957G>T Val319Val
M0077774 BGGLBHJA_00039 44892 3 Skin 0.14 protein_coding synonymous_variant LOW 1161T>C Pro387Pro
M0077775 BGGLBHJA_00039 44895 3 Skin 0.14 protein_coding synonymous_variant LOW 1164G>T Val388Val
M0077776 BGGLBHJA_00039 44949 3 Skin 0.14 protein_coding synonymous_variant LOW 1218C>T Asp406Asp
M0077777 BGGLBHJA_00039 44973 3 Skin 0.14 protein_coding synonymous_variant LOW 1242T>C Gly414Gly
M0077778 BGGLBHJA_00039 44976 3 Skin 0.14 protein_coding synonymous_variant LOW 1245T>C Ile415Ile
M0077779 BGGLBHJA_00039 45078 3 Skin 0.14 protein_coding synonymous_variant LOW 1347C>T Phe449Phe
M0077780 BGGLBHJA_00039 45171 4 Skin 0.19 protein_coding synonymous_variant LOW 1440T>C Ser480Ser
M0077781 BGGLBHJA_00040 45432 3 Skin 0.14 protein_coding synonymous_variant LOW 159G>T Ala53Ala
M0077782 BGGLBHJA_00040 45450 3 Skin 0.14 protein_coding synonymous_variant LOW 177C>T Ala59Ala
M0077783 BGGLBHJA_00040 45528 3 Skin 0.14 protein_coding synonymous_variant LOW 255C>A Ser85Ser
M0077784 BGGLBHJA_00040 45529 3 Skin 0.14 protein_coding synonymous_variant LOW 256T>C Leu86Leu
M0077785 BGGLBHJA_00040 45531 3 Skin 0.14 protein_coding missense_variant MODERATE 258G>C Leu86Phe
M0077786 BGGLBHJA_00040 45534 3 Skin 0.14 protein_coding synonymous_variant LOW 261T>C Ile87Ile
M0077787 BGGLBHJA_00040 45738 3 Skin 0.14 protein_coding synonymous_variant LOW 465C>T Val155Val
M0077788 BGGLBHJA_00040 45839 3 Skin 0.14 protein_coding missense_variant MODERATE 566T>C Val189Ala
M0077789 BGGLBHJA_00040 46389 3 Skin 0.14 protein_coding synonymous_variant LOW 1116T>C Pro372Pro
M0077790 BGGLBHJA_00040 46560 3 Skin 0.14 protein_coding synonymous_variant LOW 1287C>G Val429Val
M0077791 BGGLBHJA_00041 46922 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -220A>G None
M0077792 BGGLBHJA_00041 46988 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -154C>T None
M0077793 BGGLBHJA_00041 47341 3 Skin 0.14 protein_coding missense_variant MODERATE 200T>C Phe67Ser
M0077794 BGGLBHJA_00041 47534 3 Skin 0.14 protein_coding synonymous_variant LOW 393T>C Thr131Thr
M0077795 BGGLBHJA_00041 47564 4 Skin 0.19 protein_coding synonymous_variant LOW 423A>C Thr141Thr
M0077796 BGGLBHJA_00041 47696 4 Skin 0.19 protein_coding synonymous_variant LOW 555C>T Ser185Ser
M0077797 BGGLBHJA_00041 47783 3 Skin 0.14 protein_coding synonymous_variant LOW 642C>A Ala214Ala
M0077798 BGGLBHJA_00041 47789 3 Skin 0.14 protein_coding synonymous_variant LOW 648G>C Val216Val
M0077799 BGGLBHJA_00041 47942 4 Skin 0.19 protein_coding synonymous_variant LOW 801C>T Gly267Gly
M0077800 BGGLBHJA_00041 48083 4 Skin 0.19 protein_coding synonymous_variant LOW 942C>T Thr314Thr
M0077801 BGGLBHJA_00041 48092 4 Skin 0.19 protein_coding synonymous_variant LOW 951C>T Ile317Ile
M0077802 BGGLBHJA_00041 48287 4 Skin 0.19 protein_coding synonymous_variant LOW 1146T>C Gly382Gly
M0077803 BGGLBHJA_00043 49130 4 Skin 0.19 protein_coding synonymous_variant LOW 573C>T Ile191Ile
M0077804 BGGLBHJA_00043 49154 4 Skin 0.19 protein_coding synonymous_variant LOW 549T>G Arg183Arg
M0077805 BGGLBHJA_00043 49292 4 Skin 0.19 protein_coding synonymous_variant LOW 411G>T Ser137Ser
M0077806 BGGLBHJA_00043 49325 4 Skin 0.19 protein_coding synonymous_variant LOW 378C>A Gly126Gly
M0077807 BGGLBHJA_00043 49384 4 Skin 0.19 protein_coding missense_variant MODERATE 319T>C Tyr107His
M0077808 BGGLBHJA_00043 49592 4 Skin 0.19 protein_coding synonymous_variant LOW 111C>T Gly37Gly
M0077809 BGGLBHJA_00043 49598 4 Skin 0.19 protein_coding synonymous_variant LOW 105T>A Arg35Arg
M0077810 BGGLBHJA_00043 49601 4 Skin 0.19 protein_coding synonymous_variant LOW 102G>A Gly34Gly
M0077811 BGGLBHJA_00044 49732 4 Skin 0.19 protein_coding synonymous_variant LOW 1032G>A Leu344Leu
M0077812 BGGLBHJA_00044 49867 4 Skin 0.19 protein_coding synonymous_variant LOW 897T>C Arg299Arg
M0077813 BGGLBHJA_00044 49882 4 Skin 0.19 protein_coding synonymous_variant LOW 882C>T Val294Val
M0077814 BGGLBHJA_00022 27674 3 Skin 0.14 protein_coding synonymous_variant LOW 477A>G Leu159Leu
M0077815 BGGLBHJA_00023 28860 3 Skin 0.14 protein_coding synonymous_variant LOW 27T>C His9His
M0077816 BGGLBHJA_00024 29700 4 Skin 0.19 protein_coding synonymous_variant LOW 276C>T Cys92Cys
M0077817 BGGLBHJA_00024 29727 4 Skin 0.19 protein_coding synonymous_variant LOW 249C>A Pro83Pro
M0077818 BGGLBHJA_00025 31207 3 Skin 0.14 protein_coding synonymous_variant LOW 903T>G Gly301Gly
M0077819 BGGLBHJA_00026 32646 3 Skin 0.14 protein_coding synonymous_variant LOW 807C>T Val269Val
M0077820 BGGLBHJA_00026 32706 3 Skin 0.14 protein_coding synonymous_variant LOW 867A>G Leu289Leu
M0077821 BGGLBHJA_00026 32766 3 Skin 0.14 protein_coding synonymous_variant LOW 927C>A Pro309Pro
M0077822 BGGLBHJA_00030 35589 3 Skin 0.14 protein_coding synonymous_variant LOW 237C>T Arg79Arg
M0077823 BGGLBHJA_00034 40518 4 Skin 0.19 protein_coding synonymous_variant LOW 1086A>G Leu362Leu
M0077824 BGGLBHJA_00035 40864 3 Skin 0.14 protein_coding synonymous_variant LOW 171C>A Gly57Gly
M0077825 BGGLBHJA_00034 39930 3 Skin 0.14 protein_coding synonymous_variant LOW 498C>G Val166Val
M0077826 BGGLBHJA_00034 40521 3 Skin 0.14 protein_coding synonymous_variant LOW 1089A>C Ala363Ala
M0077827 BGGLBHJA_00036 41512 3 Skin 0.14 protein_coding missense_variant MODERATE 232T>G Leu78Val
M0077828 BGGLBHJA_00036 41513 3 Skin 0.14 protein_coding stop_gained HIGH 233T>A Leu78*
M0077829 BGGLBHJA_00036 41517 3 Skin 0.14 protein_coding synonymous_variant LOW 237G>A Gln79Gln
M0077830 BGGLBHJA_00036 41523 3 Skin 0.14 protein_coding synonymous_variant LOW 243T>C Asn81Asn
M0077831 BGGLBHJA_00036 41858 3 Skin 0.14 protein_coding missense_variant MODERATE 578G>A Gly193Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BGGLBHJA_00050 PHI:7520 VK055_1952 73.3 1.2e-208 8 490 0.9857 0.9918 rodents pneumonia betaine aldehyde dehydrogenase unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BGGLBHJA_00025 2.A.1.15.6 83.5 1.5e-206 53 500 0.8960 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
BGGLBHJA_00026 1.B.25.1.6 84.3 4.9e-219 1 426 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.25 The Outer Membrane Porin (Opr) Family