Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3179
  Reference Plasmid   MET0293_bin.7__k81_171865
  Reference Plasmid Size   53780
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0077852 IDODECCF_00004 4835 3 Skin 0.23 protein_coding synonymous_variant LOW 963G>A Val321Val
M0077853 IDODECCF_00004 4898 3 Skin 0.23 protein_coding synonymous_variant LOW 900A>G Leu300Leu
M0077854 IDODECCF_00004 4900 3 Skin 0.23 protein_coding synonymous_variant LOW 898T>C Leu300Leu
M0077855 IDODECCF_00004 4922 3 Skin 0.23 protein_coding synonymous_variant LOW 876C>A Thr292Thr
M0077856 IDODECCF_00004 4927 3 Skin 0.23 protein_coding missense_variant MODERATE 871A>G Ile291Val
M0077857 IDODECCF_00004 5120 3 Skin 0.23 protein_coding synonymous_variant LOW 678T>C Ala226Ala
M0077858 IDODECCF_00004 5144 3 Skin 0.23 protein_coding synonymous_variant LOW 654T>C Asp218Asp
M0077859 IDODECCF_00004 5165 3 Skin 0.23 protein_coding synonymous_variant LOW 633T>C Arg211Arg
M0077860 IDODECCF_00004 5237 3 Skin 0.23 protein_coding synonymous_variant LOW 561T>C Asp187Asp
M0077861 IDODECCF_00004 5258 3 Skin 0.23 protein_coding synonymous_variant LOW 540A>G Gln180Gln
M0077862 IDODECCF_00004 5294 4 Skin 0.31 protein_coding synonymous_variant LOW 504A>G Val168Val
M0077863 IDODECCF_00004 5297 3 Skin 0.23 protein_coding synonymous_variant LOW 501A>T Gly167Gly
M0077864 IDODECCF_00004 5459 3 Skin 0.23 protein_coding synonymous_variant LOW 339C>A Ala113Ala
M0077865 IDODECCF_00004 5521 3 Skin 0.23 protein_coding missense_variant MODERATE 277G>A Gly93Ser
M0077866 IDODECCF_00004 5585 3 Skin 0.23 protein_coding synonymous_variant LOW 213C>A Ala71Ala
M0077867 IDODECCF_00004 5624 3 Skin 0.23 protein_coding synonymous_variant LOW 174G>A Lys58Lys
M0077868 IDODECCF_00004 5627 3 Skin 0.23 protein_coding synonymous_variant LOW 171T>C Pro57Pro
M0077869 IDODECCF_00004 5654 3 Skin 0.23 protein_coding synonymous_variant LOW 144A>G Gln48Gln
M0077870 IDODECCF_00004 5678 4 Skin 0.31 protein_coding synonymous_variant LOW 120T>C Leu40Leu
M0077871 IDODECCF_00002 5914 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3637C>T None
M0077872 IDODECCF_00002 5916 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3639G>A None
M0077873 IDODECCF_00002 5917 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3640A>C None
M0077874 IDODECCF_00002 5920 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3643G>T None
M0077875 IDODECCF_00002 5964 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3687T>C None
M0077876 IDODECCF_00002 5988 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3711C>A None
M0077877 IDODECCF_00002 5990 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3713A>T None
M0077878 IDODECCF_00002 6059 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3782C>T None
M0077879 IDODECCF_00002 6071 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3794T>C None
M0077880 IDODECCF_00002 6155 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3878G>T None
M0077881 IDODECCF_00002 6156 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3879A>G None
M0077882 IDODECCF_00002 6193 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3916G>T None
M0077883 IDODECCF_00005 6409 3 Skin 0.23 protein_coding synonymous_variant LOW 204T>C Ser68Ser
M0077884 IDODECCF_00005 6499 4 Skin 0.31 protein_coding synonymous_variant LOW 294T>C Gly98Gly
M0077885 IDODECCF_00005 6574 4 Skin 0.31 protein_coding synonymous_variant LOW 369T>C Gly123Gly
M0077886 IDODECCF_00005 6592 3 Skin 0.23 protein_coding synonymous_variant LOW 387T>A Gly129Gly
M0077887 IDODECCF_00005 6598 4 Skin 0.31 protein_coding synonymous_variant LOW 393C>T Ser131Ser
M0077888 IDODECCF_00005 6670 3 Skin 0.23 protein_coding synonymous_variant LOW 465C>T Arg155Arg
M0077889 IDODECCF_00005 6722 3 Skin 0.23 protein_coding missense_variant MODERATE 517A>C Ser173Arg
M0077890 IDODECCF_00005 6736 3 Skin 0.23 protein_coding synonymous_variant LOW 531C>T Val177Val
M0077891 IDODECCF_00005 6740 3 Skin 0.23 protein_coding synonymous_variant LOW 535C>T Leu179Leu
M0077892 IDODECCF_00005 6886 3 Skin 0.23 protein_coding synonymous_variant LOW 681A>C Ser227Ser
M0077893 IDODECCF_00005 6922 3 Skin 0.23 protein_coding synonymous_variant LOW 717A>G Gln239Gln
M0077894 IDODECCF_00005 6937 3 Skin 0.23 protein_coding synonymous_variant LOW 732C>T Ser244Ser
M0077895 IDODECCF_00005 6946 3 Skin 0.23 protein_coding synonymous_variant LOW 741C>T Thr247Thr
M0077896 IDODECCF_00005 6973 3 Skin 0.23 protein_coding synonymous_variant LOW 768C>T Gly256Gly
M0077897 IDODECCF_00005 7123 3 Skin 0.23 protein_coding synonymous_variant LOW 918C>T Ser306Ser
M0077898 IDODECCF_00005 7168 3 Skin 0.23 protein_coding synonymous_variant LOW 963G>T Arg321Arg
M0077899 IDODECCF_00005 7216 3 Skin 0.23 protein_coding synonymous_variant LOW 1011T>C Asp337Asp
M0077900 IDODECCF_00005 7351 3 Skin 0.23 protein_coding synonymous_variant LOW 1146T>C His382His
M0077901 IDODECCF_00005 7355 3 Skin 0.23 protein_coding missense_variant MODERATE 1150G>A Gly384Ser
M0077902 IDODECCF_00005 7361 3 Skin 0.23 protein_coding missense_variant MODERATE 1156A>G Met386Val
M0077903 IDODECCF_00005 7386 3 Skin 0.23 protein_coding missense_variant MODERATE 1181C>A Ala394Asp
M0077904 IDODECCF_00005 7411 3 Skin 0.23 protein_coding synonymous_variant LOW 1206T>C Pro402Pro
M0077905 IDODECCF_00005 7509 3 Skin 0.23 protein_coding missense_variant MODERATE 1304A>T Tyr435Phe
M0077906 IDODECCF_00005 7529 3 Skin 0.23 protein_coding missense_variant MODERATE 1324A>G Ile442Val
M0077907 IDODECCF_00005 7569 3 Skin 0.23 protein_coding missense_variant MODERATE 1364G>A Ser455Asn
M0077908 IDODECCF_00005 7642 3 Skin 0.23 protein_coding synonymous_variant LOW 1437T>C Tyr479Tyr
M0077909 IDODECCF_00005 7766 3 Skin 0.23 protein_coding missense_variant MODERATE 1561T>G Leu521Val
M0077910 IDODECCF_00005 7831 3 Skin 0.23 protein_coding synonymous_variant LOW 1626C>T Asn542Asn
M0077911 IDODECCF_00005 7840 3 Skin 0.23 protein_coding synonymous_variant LOW 1635T>C Ile545Ile
M0077912 IDODECCF_00005 7885 3 Skin 0.23 protein_coding synonymous_variant LOW 1680G>A Glu560Glu
M0077913 IDODECCF_00005 8284 3 Skin 0.23 protein_coding synonymous_variant LOW 2079G>A Val693Val
M0077914 IDODECCF_00003 8304 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4989T>A None
M0077915 IDODECCF_00003 8305 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4990A>T None
M0077916 IDODECCF_00003 8308 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4993T>G None
M0077917 IDODECCF_00004 8333 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2536A>G None
M0077918 IDODECCF_00004 8437 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2640C>T None
M0077919 IDODECCF_00004 8512 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2715A>G None
M0077920 IDODECCF_00006 9545 3 Skin 0.23 protein_coding synonymous_variant LOW 2337T>C Asp779Asp
M0077921 IDODECCF_00006 9959 3 Skin 0.23 protein_coding synonymous_variant LOW 1923T>C Tyr641Tyr
M0077922 IDODECCF_00006 10358 3 Skin 0.23 protein_coding synonymous_variant LOW 1524T>C Ile508Ile
M0077923 IDODECCF_00006 10376 3 Skin 0.23 protein_coding synonymous_variant LOW 1506G>A Ala502Ala
M0077924 IDODECCF_00006 10397 3 Skin 0.23 protein_coding synonymous_variant LOW 1485G>T Thr495Thr
M0077925 IDODECCF_00006 10412 3 Skin 0.23 protein_coding synonymous_variant LOW 1470T>C His490His
M0077926 IDODECCF_00006 10430 3 Skin 0.23 protein_coding synonymous_variant LOW 1452G>A Val484Val
M0077927 IDODECCF_00006 10477 3 Skin 0.23 protein_coding synonymous_variant LOW 1405T>C Leu469Leu
M0077928 IDODECCF_00006 10538 3 Skin 0.23 protein_coding synonymous_variant LOW 1344G>A Glu448Glu
M0077929 IDODECCF_00006 10550 3 Skin 0.23 protein_coding synonymous_variant LOW 1332A>G Leu444Leu
M0077930 IDODECCF_00006 10556 3 Skin 0.23 protein_coding synonymous_variant LOW 1326G>A Arg442Arg
M0077931 IDODECCF_00006 10649 3 Skin 0.23 protein_coding synonymous_variant LOW 1233T>G Gly411Gly
M0077932 IDODECCF_00006 10652 3 Skin 0.23 protein_coding synonymous_variant LOW 1230G>A Leu410Leu
M0077933 IDODECCF_00006 10682 3 Skin 0.23 protein_coding synonymous_variant LOW 1200A>G Gln400Gln
M0077934 IDODECCF_00006 10847 3 Skin 0.23 protein_coding synonymous_variant LOW 1035C>G Thr345Thr
M0077935 IDODECCF_00006 10850 3 Skin 0.23 protein_coding synonymous_variant LOW 1032G>C Arg344Arg
M0077936 IDODECCF_00006 10853 3 Skin 0.23 protein_coding synonymous_variant LOW 1029T>C Asp343Asp
M0077937 IDODECCF_00006 10892 3 Skin 0.23 protein_coding synonymous_variant LOW 990T>C Ser330Ser
M0077938 IDODECCF_00006 10940 3 Skin 0.23 protein_coding synonymous_variant LOW 942C>T Ser314Ser
M0077939 IDODECCF_00006 10943 3 Skin 0.23 protein_coding synonymous_variant LOW 939C>T Asn313Asn
M0077940 IDODECCF_00006 10949 3 Skin 0.23 protein_coding synonymous_variant LOW 933T>G Gly311Gly
M0077941 IDODECCF_00006 11003 3 Skin 0.23 protein_coding synonymous_variant LOW 879C>A Gly293Gly
M0077942 IDODECCF_00006 11060 3 Skin 0.23 protein_coding synonymous_variant LOW 822T>C Pro274Pro
M0077943 IDODECCF_00006 11066 4 Skin 0.31 protein_coding synonymous_variant LOW 816A>G Gly272Gly
M0077944 IDODECCF_00006 11111 4 Skin 0.31 protein_coding synonymous_variant LOW 771T>C Asn257Asn
M0077945 IDODECCF_00006 11132 3 Skin 0.23 protein_coding synonymous_variant LOW 750G>C Val250Val
M0077946 IDODECCF_00006 11180 4 Skin 0.31 protein_coding synonymous_variant LOW 702G>A Glu234Glu
M0077947 IDODECCF_00006 11201 3 Skin 0.23 protein_coding synonymous_variant LOW 681A>T Thr227Thr
M0077948 IDODECCF_00006 11228 4 Skin 0.31 protein_coding synonymous_variant LOW 654A>G Leu218Leu
M0077949 IDODECCF_00006 11276 4 Skin 0.31 protein_coding synonymous_variant LOW 606C>T Phe202Phe
M0077950 IDODECCF_00006 11323 3 Skin 0.23 protein_coding synonymous_variant LOW 559C>T Leu187Leu
M0077951 IDODECCF_00006 11333 4 Skin 0.31 protein_coding synonymous_variant LOW 549A>T Val183Val
M0077952 IDODECCF_00006 11336 4 Skin 0.31 protein_coding synonymous_variant LOW 546T>C Ile182Ile
M0077953 IDODECCF_00006 11357 5 Skin 0.38 protein_coding synonymous_variant LOW 525A>G Leu175Leu
M0077954 IDODECCF_00006 11377 5 Skin 0.38 protein_coding missense_variant MODERATE 505A>G Thr169Ala
M0077955 IDODECCF_00006 11388 3 Skin 0.23 protein_coding missense_variant MODERATE 494C>T Ala165Val
M0077956 IDODECCF_00006 11394 5 Skin 0.38 protein_coding missense_variant MODERATE 488G>A Arg163Lys
M0077957 IDODECCF_00006 11408 3 Skin 0.23 protein_coding synonymous_variant LOW 474C>T Ala158Ala
M0077958 IDODECCF_00006 11444 4 Skin 0.31 protein_coding synonymous_variant LOW 438A>G Thr146Thr
M0077959 IDODECCF_00006 11447 5 Skin 0.38 protein_coding synonymous_variant LOW 435A>G Ser145Ser
M0077960 IDODECCF_00006 11456 5 Skin 0.38 protein_coding synonymous_variant LOW 426G>A Ser142Ser
M0077961 IDODECCF_00006 11468 5 Skin 0.38 protein_coding synonymous_variant LOW 414T>C Ser138Ser
M0077962 IDODECCF_00006 11477 4 Skin 0.31 protein_coding synonymous_variant LOW 405T>C Ser135Ser
M0077963 IDODECCF_00006 11480 4 Skin 0.31 protein_coding synonymous_variant LOW 402C>T Pro134Pro
M0077964 IDODECCF_00006 11504 4 Skin 0.31 protein_coding synonymous_variant LOW 378A>G Val126Val
M0077965 IDODECCF_00006 11510 3 Skin 0.23 protein_coding synonymous_variant LOW 372G>A Gln124Gln
M0077966 IDODECCF_00006 11528 5 Skin 0.38 protein_coding synonymous_variant LOW 354G>A Ala118Ala
M0077967 IDODECCF_00006 11554 5 Skin 0.38 protein_coding missense_variant MODERATE 328C>G Gln110Glu
M0077968 IDODECCF_00006 11561 5 Skin 0.38 protein_coding synonymous_variant LOW 321C>T Ile107Ile
M0077969 IDODECCF_00006 11564 4 Skin 0.31 protein_coding synonymous_variant LOW 318C>T Thr106Thr
M0077970 IDODECCF_00006 11585 3 Skin 0.23 protein_coding synonymous_variant LOW 297T>C Arg99Arg
M0077971 IDODECCF_00006 11597 3 Skin 0.23 protein_coding synonymous_variant LOW 285T>A Arg95Arg
M0077972 IDODECCF_00006 11624 4 Skin 0.31 protein_coding synonymous_variant LOW 258T>G Ala86Ala
M0077973 IDODECCF_00006 11633 5 Skin 0.38 protein_coding synonymous_variant LOW 249G>T Thr83Thr
M0077974 IDODECCF_00006 11642 4 Skin 0.31 protein_coding synonymous_variant LOW 240G>A Pro80Pro
M0077975 IDODECCF_00006 11671 3 Skin 0.23 protein_coding synonymous_variant LOW 211C>T Leu71Leu
M0077976 IDODECCF_00006 11738 3 Skin 0.23 protein_coding synonymous_variant LOW 144C>T Ile48Ile
M0077977 IDODECCF_00006 11759 5 Skin 0.38 protein_coding synonymous_variant LOW 123C>T Tyr41Tyr
M0077978 IDODECCF_00007 11903 3 Skin 0.23 protein_coding synonymous_variant LOW 1204C>T Leu402Leu
M0077979 IDODECCF_00007 11916 4 Skin 0.31 protein_coding synonymous_variant LOW 1191C>T Val397Val
M0077980 IDODECCF_00007 11983 3 Skin 0.23 protein_coding missense_variant MODERATE 1124C>T Ala375Val
M0077981 IDODECCF_00007 11985 3 Skin 0.23 protein_coding synonymous_variant LOW 1122C>T Asp374Asp
M0077982 IDODECCF_00007 12007 5 Skin 0.38 protein_coding missense_variant MODERATE 1100T>A Val367Glu
M0077983 IDODECCF_00007 12008 5 Skin 0.38 protein_coding missense_variant MODERATE 1099G>C Val367Leu
M0077984 IDODECCF_00007 12093 5 Skin 0.38 protein_coding synonymous_variant LOW 1014G>T Ala338Ala
M0077985 IDODECCF_00007 12114 3 Skin 0.23 protein_coding synonymous_variant LOW 993G>A Ala331Ala
M0077986 IDODECCF_00007 12153 5 Skin 0.38 protein_coding synonymous_variant LOW 954G>A Leu318Leu
M0077987 IDODECCF_00007 12252 5 Skin 0.38 protein_coding synonymous_variant LOW 855C>T Ile285Ile
M0077988 IDODECCF_00007 12270 3 Skin 0.23 protein_coding synonymous_variant LOW 837G>A Glu279Glu
M0077989 IDODECCF_00007 12384 3 Skin 0.23 protein_coding synonymous_variant LOW 723A>G Gln241Gln
M0077990 IDODECCF_00007 12432 5 Skin 0.38 protein_coding synonymous_variant LOW 675C>T Ile225Ile
M0077991 IDODECCF_00007 12477 3 Skin 0.23 protein_coding synonymous_variant LOW 630G>A Gly210Gly
M0077992 IDODECCF_00007 12504 3 Skin 0.23 protein_coding synonymous_variant LOW 603T>C Arg201Arg
M0077993 IDODECCF_00007 12540 5 Skin 0.38 protein_coding synonymous_variant LOW 567G>A Arg189Arg
M0077994 IDODECCF_00007 12567 3 Skin 0.23 protein_coding synonymous_variant LOW 540C>T Asp180Asp
M0077995 IDODECCF_00007 12570 3 Skin 0.23 protein_coding synonymous_variant LOW 537A>G Gln179Gln
M0077996 IDODECCF_00007 12579 3 Skin 0.23 protein_coding synonymous_variant LOW 528T>C Ser176Ser
M0077997 IDODECCF_00007 12627 5 Skin 0.38 protein_coding synonymous_variant LOW 480C>A Ala160Ala
M0077998 IDODECCF_00007 12648 5 Skin 0.38 protein_coding synonymous_variant LOW 459G>T Ala153Ala
M0077999 IDODECCF_00007 12657 5 Skin 0.38 protein_coding synonymous_variant LOW 450A>G Leu150Leu
M0078000 IDODECCF_00007 12666 3 Skin 0.23 protein_coding synonymous_variant LOW 441A>G Gln147Gln
M0078001 IDODECCF_00007 12675 4 Skin 0.31 protein_coding synonymous_variant LOW 432C>T Ile144Ile
M0078002 IDODECCF_00007 12723 5 Skin 0.38 protein_coding synonymous_variant LOW 384T>C Asn128Asn
M0078003 IDODECCF_00007 12783 5 Skin 0.38 protein_coding synonymous_variant LOW 324T>A Ala108Ala
M0078004 IDODECCF_00007 12828 3 Skin 0.23 protein_coding synonymous_variant LOW 279C>T Val93Val
M0078005 IDODECCF_00008 13471 4 Skin 0.31 protein_coding synonymous_variant LOW 960C>T Arg320Arg
M0078006 IDODECCF_00008 13480 5 Skin 0.38 protein_coding synonymous_variant LOW 951A>G Gln317Gln
M0078007 IDODECCF_00008 13487 5 Skin 0.38 protein_coding missense_variant MODERATE 944G>A Ser315Asn
M0078008 IDODECCF_00008 13494 5 Skin 0.38 protein_coding synonymous_variant LOW 937T>C Leu313Leu
M0078009 IDODECCF_00008 13504 5 Skin 0.38 protein_coding synonymous_variant LOW 927C>T Arg309Arg
M0078010 IDODECCF_00008 13508 5 Skin 0.38 protein_coding missense_variant MODERATE 923T>A Leu308Gln
M0078011 IDODECCF_00008 13523 5 Skin 0.38 protein_coding missense_variant MODERATE 908A>G Asn303Ser
M0078012 IDODECCF_00008 13552 3 Skin 0.23 protein_coding synonymous_variant LOW 879A>G Pro293Pro
M0078013 IDODECCF_00008 13564 4 Skin 0.31 protein_coding synonymous_variant LOW 867T>C Gly289Gly
M0078014 IDODECCF_00008 13585 4 Skin 0.31 protein_coding synonymous_variant LOW 846T>C Ser282Ser
M0078015 IDODECCF_00008 13588 4 Skin 0.31 protein_coding synonymous_variant LOW 843C>T Ser281Ser
M0078016 IDODECCF_00008 13606 3 Skin 0.23 protein_coding synonymous_variant LOW 825T>C Ser275Ser
M0078017 IDODECCF_00008 13645 3 Skin 0.23 protein_coding synonymous_variant LOW 786G>A Ala262Ala
M0078018 IDODECCF_00008 13681 3 Skin 0.23 protein_coding synonymous_variant LOW 750A>G Gln250Gln
M0078019 IDODECCF_00008 13702 3 Skin 0.23 protein_coding synonymous_variant LOW 729G>A Leu243Leu
M0078020 IDODECCF_00008 13822 5 Skin 0.38 protein_coding synonymous_variant LOW 609A>C Leu203Leu
M0078021 IDODECCF_00008 13848 5 Skin 0.38 protein_coding missense_variant MODERATE 583G>T Ala195Ser
M0078022 IDODECCF_00008 14077 3 Skin 0.23 protein_coding synonymous_variant LOW 354G>A Gln118Gln
M0078023 IDODECCF_00008 14095 4 Skin 0.31 protein_coding missense_variant MODERATE 336C>G His112Gln
M0078024 IDODECCF_00008 14122 3 Skin 0.23 protein_coding synonymous_variant LOW 309C>T Leu103Leu
M0078025 IDODECCF_00008 14140 4 Skin 0.31 protein_coding synonymous_variant LOW 291G>T Val97Val
M0078026 IDODECCF_00008 14176 5 Skin 0.38 protein_coding synonymous_variant LOW 255T>A Arg85Arg
M0078027 IDODECCF_00008 14177 5 Skin 0.38 protein_coding missense_variant MODERATE 254G>A Arg85His
M0078028 IDODECCF_00008 14181 3 Skin 0.23 protein_coding missense_variant MODERATE 250G>A Asp84Asn
M0078029 IDODECCF_00008 14182 5 Skin 0.38 protein_coding synonymous_variant LOW 249T>C Thr83Thr
M0078030 IDODECCF_00008 14187 5 Skin 0.38 protein_coding missense_variant MODERATE 244G>A Asp82Asn
M0078031 IDODECCF_00008 14194 3 Skin 0.23 protein_coding missense_variant MODERATE 237T>G Phe79Leu
M0078032 IDODECCF_00008 14236 4 Skin 0.31 protein_coding synonymous_variant LOW 195T>C Gly65Gly
M0078033 IDODECCF_00008 14253 5 Skin 0.38 protein_coding missense_variant MODERATE 178C>A His60Asn
M0078034 IDODECCF_00008 14262 4 Skin 0.31 protein_coding missense_variant MODERATE 169A>T Thr57Ser
M0078035 IDODECCF_00008 14290 3 Skin 0.23 protein_coding synonymous_variant LOW 141T>C Ser47Ser
M0078036 IDODECCF_00008 14305 3 Skin 0.23 protein_coding synonymous_variant LOW 126T>C His42His
M0078037 IDODECCF_00008 14306 4 Skin 0.31 protein_coding missense_variant MODERATE 125A>G His42Arg
M0078038 IDODECCF_00008 14326 4 Skin 0.31 protein_coding synonymous_variant LOW 105G>A Glu35Glu
M0078039 IDODECCF_00008 14386 4 Skin 0.31 protein_coding synonymous_variant LOW 45A>G Val15Val
M0078040 IDODECCF_00006 14432 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2551G>A None
M0078041 IDODECCF_00009 14498 4 Skin 0.31 protein_coding missense_variant MODERATE 400G>T Ala134Ser
M0078042 IDODECCF_00009 14500 3 Skin 0.23 protein_coding missense_variant MODERATE 398A>T His133Leu
M0078043 IDODECCF_00009 14608 3 Skin 0.23 protein_coding missense_variant MODERATE 290A>T Lys97Ile
M0078044 IDODECCF_00009 14640 3 Skin 0.23 protein_coding synonymous_variant LOW 258C>T Pro86Pro
M0078045 IDODECCF_00009 14658 3 Skin 0.23 protein_coding synonymous_variant LOW 240T>C Asp80Asp
M0078046 IDODECCF_00009 14701 3 Skin 0.23 protein_coding missense_variant MODERATE 197A>G Asp66Gly
M0078047 IDODECCF_00009 14702 3 Skin 0.23 protein_coding missense_variant MODERATE 196G>A Asp66Asn
M0078048 IDODECCF_00009 14706 3 Skin 0.23 protein_coding synonymous_variant LOW 192T>C Val64Val
M0078049 IDODECCF_00009 14707 3 Skin 0.23 protein_coding missense_variant MODERATE 191T>C Val64Ala
M0078050 IDODECCF_00009 14776 4 Skin 0.31 protein_coding missense_variant MODERATE 122G>A Ser41Asn
M0078051 IDODECCF_00009 14784 4 Skin 0.31 protein_coding synonymous_variant LOW 114A>G Thr38Thr
M0078052 IDODECCF_00009 14798 4 Skin 0.31 protein_coding missense_variant MODERATE 100G>A Ala34Thr
M0078053 IDODECCF_00009 14816 4 Skin 0.31 protein_coding missense_variant MODERATE 82A>G Ile28Val
M0078054 IDODECCF_00010 15055 4 Skin 0.31 protein_coding synonymous_variant LOW 816A>G Val272Val
M0078055 IDODECCF_00010 15079 4 Skin 0.31 protein_coding synonymous_variant LOW 792A>G Gln264Gln
M0078056 IDODECCF_00010 15094 4 Skin 0.31 protein_coding synonymous_variant LOW 777C>A Ala259Ala
M0078057 IDODECCF_00010 15142 4 Skin 0.31 protein_coding synonymous_variant LOW 729C>T Val243Val
M0078058 IDODECCF_00010 15154 4 Skin 0.31 protein_coding synonymous_variant LOW 717T>C His239His
M0078059 IDODECCF_00010 15160 4 Skin 0.31 protein_coding synonymous_variant LOW 711C>T Gly237Gly
M0078060 IDODECCF_00010 15166 4 Skin 0.31 protein_coding synonymous_variant LOW 705G>A Val235Val
M0078061 IDODECCF_00010 15169 4 Skin 0.31 protein_coding synonymous_variant LOW 702A>T Gly234Gly
M0078062 IDODECCF_00010 15172 4 Skin 0.31 protein_coding missense_variant MODERATE 699T>G Asp233Glu
M0078063 IDODECCF_00010 15187 4 Skin 0.31 protein_coding synonymous_variant LOW 684C>T Asp228Asp
M0078064 IDODECCF_00010 15193 4 Skin 0.31 protein_coding synonymous_variant LOW 678T>C Arg226Arg
M0078065 IDODECCF_00010 15223 4 Skin 0.31 protein_coding synonymous_variant LOW 648G>A Val216Val
M0078066 IDODECCF_00010 15273 4 Skin 0.31 protein_coding synonymous_variant LOW 598C>A Arg200Arg
M0078067 IDODECCF_00010 15310 4 Skin 0.31 protein_coding synonymous_variant LOW 561T>C Thr187Thr
M0078068 IDODECCF_00010 15348 4 Skin 0.31 protein_coding synonymous_variant LOW 523T>C Leu175Leu
M0078069 IDODECCF_00010 15364 4 Skin 0.31 protein_coding synonymous_variant LOW 507C>T Gly169Gly
M0078070 IDODECCF_00010 15373 4 Skin 0.31 protein_coding synonymous_variant LOW 498T>C Gly166Gly
M0078071 IDODECCF_00010 15388 4 Skin 0.31 protein_coding synonymous_variant LOW 483G>C Leu161Leu
M0078072 IDODECCF_00010 15394 4 Skin 0.31 protein_coding synonymous_variant LOW 477G>A Glu159Glu
M0078073 IDODECCF_00010 15430 4 Skin 0.31 protein_coding synonymous_variant LOW 441C>T Ser147Ser
M0078074 IDODECCF_00010 15448 4 Skin 0.31 protein_coding synonymous_variant LOW 423A>G Lys141Lys
M0078075 IDODECCF_00010 15460 4 Skin 0.31 protein_coding synonymous_variant LOW 411A>G Leu137Leu
M0078076 IDODECCF_00010 15466 4 Skin 0.31 protein_coding synonymous_variant LOW 405C>T Ile135Ile
M0078077 IDODECCF_00010 15480 4 Skin 0.31 protein_coding synonymous_variant LOW 391T>C Leu131Leu
M0078078 IDODECCF_00010 15482 4 Skin 0.31 protein_coding missense_variant MODERATE 389C>T Ala130Val
M0078079 IDODECCF_00010 15487 4 Skin 0.31 protein_coding synonymous_variant LOW 384C>T Val128Val
M0078080 IDODECCF_00010 15499 4 Skin 0.31 protein_coding synonymous_variant LOW 372C>T Gly124Gly
M0078081 IDODECCF_00010 15562 4 Skin 0.31 protein_coding synonymous_variant LOW 309G>C Ala103Ala
M0078082 IDODECCF_00010 15565 4 Skin 0.31 protein_coding synonymous_variant LOW 306G>A Val102Val
M0078083 IDODECCF_00010 15622 4 Skin 0.31 protein_coding synonymous_variant LOW 249T>C Gly83Gly
M0078084 IDODECCF_00010 15628 4 Skin 0.31 protein_coding synonymous_variant LOW 243G>T Thr81Thr
M0078085 IDODECCF_00010 15631 4 Skin 0.31 protein_coding synonymous_variant LOW 240C>T Arg80Arg
M0078086 IDODECCF_00010 15640 4 Skin 0.31 protein_coding synonymous_variant LOW 231C>T Asp77Asp
M0078087 IDODECCF_00010 15682 4 Skin 0.31 protein_coding synonymous_variant LOW 189C>G Ala63Ala
M0078088 IDODECCF_00010 15733 4 Skin 0.31 protein_coding synonymous_variant LOW 138A>G Leu46Leu
M0078089 IDODECCF_00010 15735 4 Skin 0.31 protein_coding synonymous_variant LOW 136C>T Leu46Leu
M0078090 IDODECCF_00010 15745 4 Skin 0.31 protein_coding synonymous_variant LOW 126T>C Ile42Ile
M0078091 IDODECCF_00010 15757 4 Skin 0.31 protein_coding synonymous_variant LOW 114T>C Val38Val
M0078092 IDODECCF_00010 15766 4 Skin 0.31 protein_coding synonymous_variant LOW 105G>A Val35Val
M0078093 IDODECCF_00010 15781 4 Skin 0.31 protein_coding synonymous_variant LOW 90C>T Phe30Phe
M0078094 IDODECCF_00010 15789 4 Skin 0.31 protein_coding synonymous_variant LOW 82T>C Leu28Leu
M0078095 IDODECCF_00010 15799 4 Skin 0.31 protein_coding synonymous_variant LOW 72T>C Ile24Ile
M0078096 IDODECCF_00010 15863 4 Skin 0.31 protein_coding missense_variant MODERATE 8A>G Asp3Gly
M0078097 IDODECCF_00006 15873 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -3992G>T None
M0078098 IDODECCF_00006 15907 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4026G>A None
M0078099 IDODECCF_00006 15952 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4071G>A None
M0078100 IDODECCF_00006 15955 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4074G>A None
M0078101 IDODECCF_00011 16007 3 Skin 0.23 protein_coding synonymous_variant LOW 831C>T Arg277Arg
M0078102 IDODECCF_00011 16019 4 Skin 0.31 protein_coding synonymous_variant LOW 819T>G Gly273Gly
M0078103 IDODECCF_00011 16032 3 Skin 0.23 protein_coding missense_variant MODERATE 806A>G Asn269Ser
M0078104 IDODECCF_00011 16043 4 Skin 0.31 protein_coding synonymous_variant LOW 795A>G Thr265Thr
M0078105 IDODECCF_00011 16127 4 Skin 0.31 protein_coding synonymous_variant LOW 711G>A Val237Val
M0078106 IDODECCF_00011 16166 3 Skin 0.23 protein_coding synonymous_variant LOW 672T>C Thr224Thr
M0078107 IDODECCF_00011 16193 3 Skin 0.23 protein_coding synonymous_variant LOW 645T>C Ser215Ser
M0078108 IDODECCF_00007 12684 3 Skin 0.23 protein_coding synonymous_variant LOW 423A>C Pro141Pro
M0078109 IDODECCF_00007 17531 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4425T>A None
M0078110 IDODECCF_00007 17555 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4449T>G None
M0078111 IDODECCF_00013 17643 3 Skin 0.23 protein_coding missense_variant MODERATE 859G>A Val287Ile
M0078112 IDODECCF_00013 17860 3 Skin 0.23 protein_coding synonymous_variant LOW 642G>A Thr214Thr
M0078113 IDODECCF_00013 18094 3 Skin 0.23 protein_coding missense_variant MODERATE 408G>C Leu136Phe
M0078114 IDODECCF_00013 18115 3 Skin 0.23 protein_coding missense_variant MODERATE 387A>T Leu129Phe
M0078115 IDODECCF_00013 18154 3 Skin 0.23 protein_coding synonymous_variant LOW 348C>G Val116Val
M0078116 IDODECCF_00013 18166 3 Skin 0.23 protein_coding synonymous_variant LOW 336A>G Ala112Ala
M0078117 IDODECCF_00013 18169 3 Skin 0.23 protein_coding synonymous_variant LOW 333T>C Ala111Ala
M0078118 IDODECCF_00013 18304 3 Skin 0.23 protein_coding synonymous_variant LOW 198T>C Phe66Phe
M0078119 IDODECCF_00013 18334 3 Skin 0.23 protein_coding synonymous_variant LOW 168C>T His56His
M0078120 IDODECCF_00013 18388 3 Skin 0.23 protein_coding synonymous_variant LOW 114A>G Ala38Ala
M0078121 IDODECCF_00008 18533 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4103T>G None
M0078122 IDODECCF_00008 18760 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4330A>G None
M0078123 IDODECCF_00008 18761 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4331C>G None
M0078124 IDODECCF_00008 18777 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4347G>A None
M0078125 IDODECCF_00014 18854 3 Skin 0.23 protein_coding synonymous_variant LOW 1203A>G Ala401Ala
M0078126 IDODECCF_00014 18860 3 Skin 0.23 protein_coding synonymous_variant LOW 1197C>T Arg399Arg
M0078127 IDODECCF_00014 18881 3 Skin 0.23 protein_coding synonymous_variant LOW 1176C>A Val392Val
M0078128 IDODECCF_00014 18884 3 Skin 0.23 protein_coding synonymous_variant LOW 1173T>C Gly391Gly
M0078129 IDODECCF_00014 18923 3 Skin 0.23 protein_coding synonymous_variant LOW 1134C>T Gly378Gly
M0078130 IDODECCF_00014 18932 3 Skin 0.23 protein_coding synonymous_variant LOW 1125G>A Gln375Gln
M0078131 IDODECCF_00014 19175 3 Skin 0.23 protein_coding synonymous_variant LOW 882A>G Val294Val
M0078132 IDODECCF_00014 19274 3 Skin 0.23 protein_coding synonymous_variant LOW 783A>G Gly261Gly
M0078133 IDODECCF_00014 19367 3 Skin 0.23 protein_coding synonymous_variant LOW 690T>G Val230Val
M0078134 IDODECCF_00014 19573 3 Skin 0.23 protein_coding missense_variant MODERATE 484A>G Thr162Ala
M0078135 IDODECCF_00014 19664 3 Skin 0.23 protein_coding synonymous_variant LOW 393T>C Thr131Thr
M0078136 IDODECCF_00014 19841 3 Skin 0.23 protein_coding synonymous_variant LOW 216A>G Thr72Thr
M0078137 IDODECCF_00014 19876 3 Skin 0.23 protein_coding missense_variant MODERATE 181A>G Thr61Ala
M0078138 IDODECCF_00014 19950 3 Skin 0.23 protein_coding missense_variant MODERATE 107G>A Ser36Asn
M0078139 IDODECCF_00014 19976 3 Skin 0.23 protein_coding synonymous_variant LOW 81G>A Thr27Thr
M0078140 IDODECCF_00014 20024 3 Skin 0.23 protein_coding synonymous_variant LOW 33A>C Val11Val
M0078141 IDODECCF_00010 20309 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4439C>G None
M0078142 IDODECCF_00015 20354 3 Skin 0.23 protein_coding missense_variant MODERATE 1312A>G Ser438Gly
M0078143 IDODECCF_00015 20355 3 Skin 0.23 protein_coding synonymous_variant LOW 1311C>T Asp437Asp
M0078144 IDODECCF_00015 20973 3 Skin 0.23 protein_coding synonymous_variant LOW 693T>A Thr231Thr
M0078145 IDODECCF_00015 21120 3 Skin 0.23 protein_coding synonymous_variant LOW 546T>C Ile182Ile
M0078146 IDODECCF_00015 21180 3 Skin 0.23 protein_coding synonymous_variant LOW 486C>G Thr162Thr
M0078147 IDODECCF_00015 21189 3 Skin 0.23 protein_coding synonymous_variant LOW 477C>T Gly159Gly
M0078148 IDODECCF_00015 21201 3 Skin 0.23 protein_coding synonymous_variant LOW 465C>T Gly155Gly
M0078149 IDODECCF_00015 21219 3 Skin 0.23 protein_coding synonymous_variant LOW 447T>G Val149Val
M0078150 IDODECCF_00015 21435 3 Skin 0.23 protein_coding synonymous_variant LOW 231C>T Ser77Ser
M0078151 IDODECCF_00015 21441 3 Skin 0.23 protein_coding synonymous_variant LOW 225A>G Ala75Ala
M0078152 IDODECCF_00013 21851 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3350T>A None
M0078153 IDODECCF_00013 21852 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3351T>A None
M0078154 IDODECCF_00013 21905 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -3404C>T None
M0078155 IDODECCF_00013 21913 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -3412C>A None
M0078156 IDODECCF_00016 21949 3 Skin 0.23 protein_coding synonymous_variant LOW 912C>A Ile304Ile
M0078157 IDODECCF_00016 21958 3 Skin 0.23 protein_coding synonymous_variant LOW 903C>T Arg301Arg
M0078158 IDODECCF_00016 22012 3 Skin 0.23 protein_coding synonymous_variant LOW 849A>G Ser283Ser
M0078159 IDODECCF_00016 22027 3 Skin 0.23 protein_coding synonymous_variant LOW 834C>T Ser278Ser
M0078160 IDODECCF_00016 22192 3 Skin 0.23 protein_coding synonymous_variant LOW 669T>C Val223Val
M0078161 IDODECCF_00016 22249 3 Skin 0.23 protein_coding synonymous_variant LOW 612T>C Thr204Thr
M0078162 IDODECCF_00016 22411 4 Skin 0.31 protein_coding synonymous_variant LOW 450C>A Ser150Ser
M0078163 IDODECCF_00016 22417 4 Skin 0.31 protein_coding synonymous_variant LOW 444C>T Arg148Arg
M0078164 IDODECCF_00016 22462 3 Skin 0.23 protein_coding synonymous_variant LOW 399G>A Gln133Gln
M0078165 IDODECCF_00016 22468 4 Skin 0.31 protein_coding synonymous_variant LOW 393G>A Gln131Gln
M0078166 IDODECCF_00016 22567 4 Skin 0.31 protein_coding synonymous_variant LOW 294T>A Gly98Gly
M0078167 IDODECCF_00016 22570 4 Skin 0.31 protein_coding synonymous_variant LOW 291A>G Val97Val
M0078168 IDODECCF_00016 22582 4 Skin 0.31 protein_coding synonymous_variant LOW 279T>C Thr93Thr
M0078169 IDODECCF_00016 22744 3 Skin 0.23 protein_coding synonymous_variant LOW 117G>A Leu39Leu
M0078170 IDODECCF_00013 22974 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4473G>T None
M0078171 IDODECCF_00017 23099 4 Skin 0.31 protein_coding missense_variant MODERATE 124A>G Ile42Val
M0078172 IDODECCF_00017 23122 4 Skin 0.31 protein_coding synonymous_variant LOW 147G>A Thr49Thr
M0078173 IDODECCF_00017 23128 4 Skin 0.31 protein_coding synonymous_variant LOW 153T>C Gly51Gly
M0078174 IDODECCF_00017 23332 4 Skin 0.31 protein_coding synonymous_variant LOW 357T>C Pro119Pro
M0078175 IDODECCF_00017 23356 4 Skin 0.31 protein_coding synonymous_variant LOW 381T>C Arg127Arg
M0078176 IDODECCF_00017 23386 4 Skin 0.31 protein_coding synonymous_variant LOW 411A>G Val137Val
M0078177 IDODECCF_00017 23473 4 Skin 0.31 protein_coding synonymous_variant LOW 498T>C Ile166Ile
M0078178 IDODECCF_00017 23593 4 Skin 0.31 protein_coding synonymous_variant LOW 618G>A Lys206Lys
M0078179 IDODECCF_00017 23665 4 Skin 0.31 protein_coding synonymous_variant LOW 690A>G Ala230Ala
M0078180 IDODECCF_00017 23806 3 Skin 0.23 protein_coding synonymous_variant LOW 831T>C Ile277Ile
M0078181 IDODECCF_00017 23845 4 Skin 0.31 protein_coding synonymous_variant LOW 870T>G Gly290Gly
M0078182 IDODECCF_00017 23863 4 Skin 0.31 protein_coding synonymous_variant LOW 888G>A Gly296Gly
M0078183 IDODECCF_00017 23932 3 Skin 0.23 protein_coding synonymous_variant LOW 957C>T Ala319Ala
M0078184 IDODECCF_00017 23941 4 Skin 0.31 protein_coding synonymous_variant LOW 966A>C Thr322Thr
M0078185 IDODECCF_00017 24008 4 Skin 0.31 protein_coding missense_variant MODERATE 1033A>G Thr345Ala
M0078186 IDODECCF_00017 24016 3 Skin 0.23 protein_coding synonymous_variant LOW 1041C>T His347His
M0078187 IDODECCF_00017 24049 3 Skin 0.23 protein_coding synonymous_variant LOW 1074G>A Leu358Leu
M0078188 IDODECCF_00018 24197 4 Skin 0.31 protein_coding missense_variant MODERATE 83G>A Arg28Lys
M0078189 IDODECCF_00018 24261 4 Skin 0.31 protein_coding synonymous_variant LOW 147A>G Gln49Gln
M0078190 IDODECCF_00018 24378 3 Skin 0.23 protein_coding synonymous_variant LOW 264A>C Pro88Pro
M0078191 IDODECCF_00018 24381 3 Skin 0.23 protein_coding synonymous_variant LOW 267G>T Ser89Ser
M0078192 IDODECCF_00014 24546 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -4490G>T None
M0078193 IDODECCF_00013 21894 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3393G>A None
M0078194 IDODECCF_00016 22216 3 Skin 0.23 protein_coding synonymous_variant LOW 645G>A Leu215Leu
M0078195 IDODECCF_00016 22270 3 Skin 0.23 protein_coding synonymous_variant LOW 591T>C His197His
M0078196 IDODECCF_00016 22351 3 Skin 0.23 protein_coding synonymous_variant LOW 510T>G Ser170Ser
M0078197 IDODECCF_00016 22489 3 Skin 0.23 protein_coding synonymous_variant LOW 372C>T Ile124Ile
M0078198 IDODECCF_00016 22552 3 Skin 0.23 protein_coding synonymous_variant LOW 309T>G Gly103Gly
M0078199 IDODECCF_00016 22564 3 Skin 0.23 protein_coding synonymous_variant LOW 297A>G Ser99Ser
M0078200 IDODECCF_00016 22702 3 Skin 0.23 protein_coding synonymous_variant LOW 159T>C Arg53Arg
M0078201 IDODECCF_00016 22729 3 Skin 0.23 protein_coding synonymous_variant LOW 132T>A Gly44Gly
M0078202 IDODECCF_00017 23233 3 Skin 0.23 protein_coding synonymous_variant LOW 258C>T Thr86Thr
M0078203 IDODECCF_00017 23308 3 Skin 0.23 protein_coding synonymous_variant LOW 333C>T Ile111Ile
M0078204 IDODECCF_00017 23344 3 Skin 0.23 protein_coding synonymous_variant LOW 369A>G Val123Val
M0078205 IDODECCF_00017 23347 3 Skin 0.23 protein_coding synonymous_variant LOW 372G>A Leu124Leu
M0078206 IDODECCF_00017 23350 3 Skin 0.23 protein_coding synonymous_variant LOW 375T>C Gly125Gly
M0078207 IDODECCF_00017 23368 3 Skin 0.23 protein_coding synonymous_variant LOW 393C>T Ser131Ser
M0078208 IDODECCF_00017 23445 3 Skin 0.23 protein_coding missense_variant MODERATE 470A>G Lys157Arg
M0078209 IDODECCF_00017 23641 3 Skin 0.23 protein_coding synonymous_variant LOW 666C>G Pro222Pro
M0078210 IDODECCF_00014 24112 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4056A>G None
M0078211 IDODECCF_00018 24330 3 Skin 0.23 protein_coding synonymous_variant LOW 216T>C Pro72Pro
M0078212 IDODECCF_00018 24348 3 Skin 0.23 protein_coding synonymous_variant LOW 234T>C Asn78Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
IDODECCF_00029 PHI:124161 aroQ1 71.4 4.3e-53 5 144 0.9272 0.8974 eudicots bacterial wilt 3-dehydroquinase unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
IDODECCF_00024 2.A.46.1.1 79 3.1e-170 1 390 0.9512 0.9898 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.46 The Benzoate:H+ Symporter (BenE) Family