Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3183
  Reference Plasmid   MET0310_bin.27__k81_221692
  Reference Plasmid Size   2745
  Reference Plasmid GC Content   0.73
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0078265 FMLPFEHH_00001 147 3 Skin 0.33 protein_coding missense_variant MODERATE 112G>A Ala38Thr
M0078266 FMLPFEHH_00001 294 3 Skin 0.33 protein_coding missense_variant MODERATE 259T>G Cys87Gly
M0078267 FMLPFEHH_00001 295 3 Skin 0.33 protein_coding missense_variant MODERATE 260G>C Cys87Ser
M0078268 FMLPFEHH_00001 300 3 Skin 0.33 protein_coding missense_variant MODERATE 265T>G Phe89Val
M0078269 FMLPFEHH_00001 375 4 Skin 0.44 protein_coding missense_variant MODERATE 340C>G His114Asp
M0078270 FMLPFEHH_00001 609 5 Skin 0.56 protein_coding missense_variant MODERATE 574G>A Val192Met
M0078271 FMLPFEHH_00001 905 3 Skin 0.33 protein_coding synonymous_variant LOW 870C>T Gly290Gly
M0078272 FMLPFEHH_00001 1572 3 Skin 0.33 protein_coding missense_variant MODERATE 1537G>C Gly513Arg
M0078273 FMLPFEHH_00001 1665 7 Skin 0.78 protein_coding missense_variant MODERATE 1630A>C Ser544Arg
M0078274 FMLPFEHH_00002 2300 5 Skin 0.56 protein_coding missense_variant MODERATE 352C>G His118Asp
M0078275 FMLPFEHH_00002 2369 3 Skin 0.33 protein_coding missense_variant MODERATE 283G>A Val95Ile
M0078276 FMLPFEHH_00002 2372 3 Skin 0.33 protein_coding missense_variant MODERATE 280G>A Gly94Ser
M0078277 FMLPFEHH_00002 2592 6 Skin 0.67 protein_coding synonymous_variant LOW 60C>T Gly20Gly
M0078278 FMLPFEHH_00002 2597 7 Skin 0.78 protein_coding missense_variant MODERATE 55A>G Ile19Val
M0078279 FMLPFEHH_00002 2612 8 Skin 0.89 protein_coding missense_variant MODERATE 40C>G Leu14Val
M0078280 FMLPFEHH_00001 1281 5 Skin 0.56 protein_coding synonymous_variant LOW 1246A>C Arg416Arg
M0078281 FMLPFEHH_00001 1296 6 Skin 0.67 protein_coding missense_variant MODERATE 1261A>G Thr421Ala
M0078282 FMLPFEHH_00001 1328 4 Skin 0.44 protein_coding synonymous_variant LOW 1293A>C Gly431Gly
M0078283 FMLPFEHH_00001 1401 5 Skin 0.56 protein_coding missense_variant MODERATE 1366C>G Arg456Gly
M0078284 FMLPFEHH_00001 1434 5 Skin 0.56 protein_coding missense_variant MODERATE 1399G>A Ala467Thr
M0078285 FMLPFEHH_00001 1497 4 Skin 0.44 protein_coding missense_variant MODERATE 1462T>C Ser488Pro
M0078286 FMLPFEHH_00001 1824 6 Skin 0.67 protein_coding missense_variant MODERATE 1789C>A Leu597Ile
M0078287 FMLPFEHH_00002 2525 3 Skin 0.33 protein_coding missense_variant MODERATE 127G>A Gly43Ser
M0078288 FMLPFEHH_00002 2531 4 Skin 0.44 protein_coding missense_variant MODERATE 121A>G Thr41Ala
M0078289 FMLPFEHH_00001 975 4 Skin 0.44 protein_coding missense_variant MODERATE 940G>A Gly314Ser
M0078290 FMLPFEHH_00001 1335 3 Skin 0.33 protein_coding missense_variant MODERATE 1300A>G Thr434Ala
M0078291 FMLPFEHH_00001 2010 4 Skin 0.44 protein_coding missense_variant MODERATE 1975A>G Thr659Ala
M0078292 FMLPFEHH_00001 1936 3 Skin 0.33 protein_coding missense_variant MODERATE 1901A>T His634Leu
M0078293 FMLPFEHH_00001 1968 3 Skin 0.33 protein_coding missense_variant MODERATE 1933C>T His645Tyr
M0078294 FMLPFEHH_00001 1977 3 Skin 0.33 protein_coding missense_variant MODERATE 1942C>G Pro648Ala
M0078295 FMLPFEHH_00001 2024 3 Skin 0.33 protein_coding stop_gained HIGH 1989G>A Trp663*
M0078296 FMLPFEHH_00002 2519 3 Skin 0.33 protein_coding missense_variant MODERATE 133G>C Gly45Arg
M0078297 FMLPFEHH_00001 1365 3 Skin 0.33 protein_coding missense_variant MODERATE 1330G>A Ala444Thr
M0078298 FMLPFEHH_00001 1551 3 Skin 0.33 protein_coding missense_variant MODERATE 1516A>G Thr506Ala
M0078299 FMLPFEHH_00001 1800 3 Skin 0.33 protein_coding missense_variant MODERATE 1765G>C Gly589Arg
M0078300 FMLPFEHH_00002 2510 3 Skin 0.33 protein_coding missense_variant MODERATE 142G>A Gly48Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term