Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3188
  Reference Plasmid   MET0310_bin.42__k81_281320
  Reference Plasmid Size   23749
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0078696 CNONEOIJ_00001 371 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -144T>C None
M0078697 CNONEOIJ_00002 646 3 Skin 0.13 protein_coding synonymous_variant LOW 1512G>T Pro504Pro
M0078698 CNONEOIJ_00002 724 3 Skin 0.13 protein_coding synonymous_variant LOW 1434C>T Asn478Asn
M0078699 CNONEOIJ_00002 806 3 Skin 0.13 protein_coding missense_variant MODERATE 1352T>A Phe451Tyr
M0078700 CNONEOIJ_00002 825 3 Skin 0.13 protein_coding missense_variant MODERATE 1333C>T Pro445Ser
M0078701 CNONEOIJ_00002 892 4 Skin 0.17 protein_coding synonymous_variant LOW 1266T>C Gly422Gly
M0078702 CNONEOIJ_00002 913 4 Skin 0.17 protein_coding synonymous_variant LOW 1245C>T Ile415Ile
M0078703 CNONEOIJ_00002 928 4 Skin 0.17 protein_coding synonymous_variant LOW 1230G>A Arg410Arg
M0078704 CNONEOIJ_00002 949 4 Skin 0.17 protein_coding synonymous_variant LOW 1209C>T Pro403Pro
M0078705 CNONEOIJ_00002 950 4 Skin 0.17 protein_coding missense_variant MODERATE 1208C>T Pro403Leu
M0078706 CNONEOIJ_00002 991 3 Skin 0.13 protein_coding synonymous_variant LOW 1167C>T Val389Val
M0078707 CNONEOIJ_00002 1021 3 Skin 0.13 protein_coding synonymous_variant LOW 1137G>T Val379Val
M0078708 CNONEOIJ_00002 1036 3 Skin 0.13 protein_coding missense_variant MODERATE 1122A>C Gln374His
M0078709 CNONEOIJ_00002 1188 3 Skin 0.13 protein_coding synonymous_variant LOW 970C>T Leu324Leu
M0078710 CNONEOIJ_00002 1189 3 Skin 0.13 protein_coding synonymous_variant LOW 969T>A Pro323Pro
M0078711 CNONEOIJ_00002 1290 6 Skin 0.26 protein_coding missense_variant MODERATE 868A>G Thr290Ala
M0078712 CNONEOIJ_00002 1339 3 Skin 0.13 protein_coding synonymous_variant LOW 819C>T Phe273Phe
M0078713 CNONEOIJ_00002 1381 3 Skin 0.13 protein_coding synonymous_variant LOW 777C>T Val259Val
M0078714 CNONEOIJ_00002 1405 3 Skin 0.13 protein_coding synonymous_variant LOW 753G>A Arg251Arg
M0078715 CNONEOIJ_00002 1441 3 Skin 0.13 protein_coding synonymous_variant LOW 717G>A Ala239Ala
M0078716 CNONEOIJ_00002 1498 3 Skin 0.13 protein_coding synonymous_variant LOW 660A>T Pro220Pro
M0078717 CNONEOIJ_00002 1521 3 Skin 0.13 protein_coding missense_variant MODERATE 637A>G Thr213Ala
M0078718 CNONEOIJ_00002 1535 3 Skin 0.13 protein_coding missense_variant MODERATE 623G>A Gly208Asp
M0078719 CNONEOIJ_00002 1543 3 Skin 0.13 protein_coding synonymous_variant LOW 615T>C Cys205Cys
M0078720 CNONEOIJ_00002 1570 3 Skin 0.13 protein_coding synonymous_variant LOW 588G>T Ala196Ala
M0078721 CNONEOIJ_00002 1642 3 Skin 0.13 protein_coding synonymous_variant LOW 516C>T Ser172Ser
M0078722 CNONEOIJ_00002 1660 3 Skin 0.13 protein_coding synonymous_variant LOW 498A>G Glu166Glu
M0078723 CNONEOIJ_00002 1715 3 Skin 0.13 protein_coding missense_variant MODERATE 443C>A Ala148Glu
M0078724 CNONEOIJ_00002 1765 3 Skin 0.13 protein_coding synonymous_variant LOW 393T>C Asp131Asp
M0078725 CNONEOIJ_00002 1806 3 Skin 0.13 protein_coding missense_variant MODERATE 352A>G Ile118Val
M0078726 CNONEOIJ_00002 1885 3 Skin 0.13 protein_coding synonymous_variant LOW 273G>T Gly91Gly
M0078727 CNONEOIJ_00002 1908 6 Skin 0.26 protein_coding missense_variant MODERATE 250T>G Ser84Ala
M0078728 CNONEOIJ_00002 1944 6 Skin 0.26 protein_coding synonymous_variant LOW 214C>T Leu72Leu
M0078729 CNONEOIJ_00002 2114 3 Skin 0.13 protein_coding missense_variant MODERATE 44G>A Ser15Asn
M0078730 CNONEOIJ_00005 5938 3 Skin 0.13 protein_coding synonymous_variant LOW 234C>T Thr78Thr
M0078731 CNONEOIJ_00005 5947 5 Skin 0.22 protein_coding missense_variant MODERATE 225G>C Glu75Asp
M0078732 CNONEOIJ_00005 6154 5 Skin 0.22 protein_coding missense_variant MODERATE 18G>T Leu6Phe
M0078733 CNONEOIJ_00002 6423 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4266A>G None
M0078734 CNONEOIJ_00002 6451 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4294A>C None
M0078735 CNONEOIJ_00002 6606 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4449C>G None
M0078736 CNONEOIJ_00002 6610 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4453T>C None
M0078737 CNONEOIJ_00002 6631 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4474T>C None
M0078738 CNONEOIJ_00002 6639 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4482C>T None
M0078739 CNONEOIJ_00006 6661 4 Skin 0.17 protein_coding splice_region_variant&stop_retained_variant LOW 900A>G Ter300Ter
M0078740 CNONEOIJ_00006 6825 4 Skin 0.17 protein_coding missense_variant MODERATE 736G>A Val246Ile
M0078741 CNONEOIJ_00006 6842 5 Skin 0.22 protein_coding missense_variant MODERATE 719G>A Gly240Asp
M0078742 CNONEOIJ_00006 6862 5 Skin 0.22 protein_coding synonymous_variant LOW 699T>C Tyr233Tyr
M0078743 CNONEOIJ_00006 6895 4 Skin 0.17 protein_coding synonymous_variant LOW 666A>C Val222Val
M0078744 CNONEOIJ_00006 7090 4 Skin 0.17 protein_coding synonymous_variant LOW 471T>C Asn157Asn
M0078745 CNONEOIJ_00006 7306 4 Skin 0.17 protein_coding synonymous_variant LOW 255G>A Leu85Leu
M0078746 CNONEOIJ_00006 7449 4 Skin 0.17 protein_coding missense_variant MODERATE 112G>A Ala38Thr
M0078747 CNONEOIJ_00006 7491 3 Skin 0.13 protein_coding missense_variant MODERATE 70C>A Leu24Ile
M0078748 CNONEOIJ_00003 7564 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4960C>T None
M0078749 CNONEOIJ_00004 7657 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -4117A>G None
M0078750 CNONEOIJ_00007 7875 3 Skin 0.13 protein_coding synonymous_variant LOW 435T>C His145His
M0078751 CNONEOIJ_00007 7902 3 Skin 0.13 protein_coding synonymous_variant LOW 408C>A Val136Val
M0078752 CNONEOIJ_00007 7929 3 Skin 0.13 protein_coding synonymous_variant LOW 381T>G Gly127Gly
M0078753 CNONEOIJ_00007 8001 4 Skin 0.17 protein_coding synonymous_variant LOW 309C>T Gly103Gly
M0078754 CNONEOIJ_00007 8034 4 Skin 0.17 protein_coding synonymous_variant LOW 276C>T Ile92Ile
M0078755 CNONEOIJ_00007 8070 4 Skin 0.17 protein_coding synonymous_variant LOW 240A>C Ala80Ala
M0078756 CNONEOIJ_00007 8073 8 Skin 0.35 protein_coding synonymous_variant LOW 237C>T Gly79Gly
M0078757 CNONEOIJ_00007 8091 3 Skin 0.13 protein_coding synonymous_variant LOW 219G>T Thr73Thr
M0078758 CNONEOIJ_00007 8190 3 Skin 0.13 protein_coding synonymous_variant LOW 120C>T Ala40Ala
M0078759 CNONEOIJ_00008 8337 3 Skin 0.13 protein_coding missense_variant MODERATE 683T>C Met228Thr
M0078760 CNONEOIJ_00008 8363 3 Skin 0.13 protein_coding synonymous_variant LOW 657T>C Asn219Asn
M0078761 CNONEOIJ_00008 8657 4 Skin 0.17 protein_coding synonymous_variant LOW 363A>G Arg121Arg
M0078762 CNONEOIJ_00008 8660 4 Skin 0.17 protein_coding synonymous_variant LOW 360C>T Thr120Thr
M0078763 CNONEOIJ_00008 8726 3 Skin 0.13 protein_coding synonymous_variant LOW 294A>G Leu98Leu
M0078764 CNONEOIJ_00008 8750 3 Skin 0.13 protein_coding synonymous_variant LOW 270A>G Leu90Leu
M0078765 CNONEOIJ_00008 8822 3 Skin 0.13 protein_coding synonymous_variant LOW 198A>G Leu66Leu
M0078766 CNONEOIJ_00004 7651 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4111T>C None
M0078767 CNONEOIJ_00005 5724 3 Skin 0.13 protein_coding missense_variant MODERATE 448T>G Ser150Ala
M0078768 CNONEOIJ_00009 9537 4 Skin 0.17 protein_coding synonymous_variant LOW 1056A>G Ser352Ser
M0078769 CNONEOIJ_00009 9555 4 Skin 0.17 protein_coding synonymous_variant LOW 1038T>C Asn346Asn
M0078770 CNONEOIJ_00011 12128 5 Skin 0.22 protein_coding synonymous_variant LOW 340T>C Leu114Leu
M0078771 CNONEOIJ_00011 12333 3 Skin 0.13 protein_coding synonymous_variant LOW 135A>G Leu45Leu
M0078772 CNONEOIJ_00006 12506 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4946G>A None
M0078773 CNONEOIJ_00006 12510 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4950C>T None
M0078774 CNONEOIJ_00007 12615 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4306T>C None
M0078775 CNONEOIJ_00007 12624 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4315A>G None
M0078776 CNONEOIJ_00012 12813 5 Skin 0.22 protein_coding synonymous_variant LOW 96T>C Asp32Asp
M0078777 CNONEOIJ_00012 13194 3 Skin 0.13 protein_coding synonymous_variant LOW 477C>T Thr159Thr
M0078778 CNONEOIJ_00012 13218 3 Skin 0.13 protein_coding synonymous_variant LOW 501C>G Val167Val
M0078779 CNONEOIJ_00012 13245 3 Skin 0.13 protein_coding synonymous_variant LOW 528C>T Thr176Thr
M0078780 CNONEOIJ_00012 13391 3 Skin 0.13 protein_coding missense_variant MODERATE 674G>A Arg225Lys
M0078781 CNONEOIJ_00012 13403 3 Skin 0.13 protein_coding missense_variant MODERATE 686T>G Ile229Ser
M0078782 CNONEOIJ_00012 13408 3 Skin 0.13 protein_coding missense_variant MODERATE 691A>G Ser231Gly
M0078783 CNONEOIJ_00012 13413 3 Skin 0.13 protein_coding stop_lost&splice_region_variant HIGH 696A>T Ter232Tyrext*?
M0078784 CNONEOIJ_00008 13414 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4395T>C None
M0078785 CNONEOIJ_00008 13415 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4396C>T None
M0078786 CNONEOIJ_00008 13432 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4413G>A None
M0078787 CNONEOIJ_00008 13518 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4499C>A None
M0078788 CNONEOIJ_00008 13835 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4816T>C None
M0078789 CNONEOIJ_00008 13873 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4854A>G None
M0078790 CNONEOIJ_00004 3508 4 Skin 0.17 protein_coding synonymous_variant LOW 33C>T Phe11Phe
M0078791 CNONEOIJ_00004 3511 4 Skin 0.17 protein_coding synonymous_variant LOW 30A>G Leu10Leu
M0078792 CNONEOIJ_00004 3523 4 Skin 0.17 protein_coding synonymous_variant LOW 18T>C Pro6Pro
M0078793 CNONEOIJ_00005 3559 4 Skin 0.17 protein_coding synonymous_variant LOW 2613T>C Asn871Asn
M0078794 CNONEOIJ_00005 3571 4 Skin 0.17 protein_coding synonymous_variant LOW 2601C>T Gly867Gly
M0078795 CNONEOIJ_00005 3631 4 Skin 0.17 protein_coding synonymous_variant LOW 2541A>G Leu847Leu
M0078796 CNONEOIJ_00005 3647 4 Skin 0.17 protein_coding missense_variant MODERATE 2525C>T Ser842Leu
M0078797 CNONEOIJ_00005 3650 4 Skin 0.17 protein_coding missense_variant MODERATE 2522C>A Ala841Glu
M0078798 CNONEOIJ_00005 3652 4 Skin 0.17 protein_coding synonymous_variant LOW 2520A>G Gly840Gly
M0078799 CNONEOIJ_00005 4227 3 Skin 0.13 protein_coding missense_variant MODERATE 1945C>G Gln649Glu
M0078800 CNONEOIJ_00005 4768 4 Skin 0.17 protein_coding synonymous_variant LOW 1404G>C Leu468Leu
M0078801 CNONEOIJ_00005 4774 4 Skin 0.17 protein_coding synonymous_variant LOW 1398C>T Arg466Arg
M0078802 CNONEOIJ_00005 4777 4 Skin 0.17 protein_coding synonymous_variant LOW 1395A>C Val465Val
M0078803 CNONEOIJ_00005 4783 4 Skin 0.17 protein_coding synonymous_variant LOW 1389T>C Ile463Ile
M0078804 CNONEOIJ_00005 4801 3 Skin 0.13 protein_coding synonymous_variant LOW 1371G>C Val457Val
M0078805 CNONEOIJ_00005 4819 4 Skin 0.17 protein_coding synonymous_variant LOW 1353A>G Gln451Gln
M0078806 CNONEOIJ_00005 4821 4 Skin 0.17 protein_coding missense_variant MODERATE 1351C>G Gln451Glu
M0078807 CNONEOIJ_00005 4825 4 Skin 0.17 protein_coding synonymous_variant LOW 1347T>C Gly449Gly
M0078808 CNONEOIJ_00005 4831 4 Skin 0.17 protein_coding synonymous_variant LOW 1341T>A Val447Val
M0078809 CNONEOIJ_00005 4840 4 Skin 0.17 protein_coding synonymous_variant LOW 1332C>T Arg444Arg
M0078810 CNONEOIJ_00005 4851 4 Skin 0.17 protein_coding missense_variant MODERATE 1321C>T His441Tyr
M0078811 CNONEOIJ_00005 4882 4 Skin 0.17 protein_coding synonymous_variant LOW 1290G>A Glu430Glu
M0078812 CNONEOIJ_00005 4976 4 Skin 0.17 protein_coding missense_variant MODERATE 1196A>G Asn399Ser
M0078813 CNONEOIJ_00005 5147 3 Skin 0.13 protein_coding missense_variant MODERATE 1025G>A Arg342His
M0078814 CNONEOIJ_00005 5234 5 Skin 0.22 protein_coding missense_variant MODERATE 938T>C Val313Ala
M0078815 CNONEOIJ_00005 5350 3 Skin 0.13 protein_coding synonymous_variant LOW 822C>T Gly274Gly
M0078816 CNONEOIJ_00005 5371 4 Skin 0.17 protein_coding synonymous_variant LOW 801G>A Leu267Leu
M0078817 CNONEOIJ_00011 11760 4 Skin 0.17 protein_coding synonymous_variant LOW 708C>T Gly236Gly
M0078818 CNONEOIJ_00011 11932 5 Skin 0.22 protein_coding missense_variant MODERATE 536A>G Asp179Gly
M0078819 CNONEOIJ_00011 12289 4 Skin 0.17 protein_coding missense_variant MODERATE 179C>G Thr60Ser
M0078820 CNONEOIJ_00011 12291 4 Skin 0.17 protein_coding synonymous_variant LOW 177C>T Ser59Ser
M0078821 CNONEOIJ_00003 2422 3 Skin 0.13 protein_coding synonymous_variant LOW 183T>G Gly61Gly
M0078822 CNONEOIJ_00003 2583 7 Skin 0.30 protein_coding missense_variant MODERATE 22T>C Phe8Leu
M0078823 CNONEOIJ_00004 2986 4 Skin 0.17 protein_coding missense_variant MODERATE 555T>G Asp185Glu
M0078824 CNONEOIJ_00005 5017 3 Skin 0.13 protein_coding synonymous_variant LOW 1155C>T Asn385Asn
M0078825 CNONEOIJ_00014 15046 3 Skin 0.13 protein_coding synonymous_variant LOW 1035A>T Ala345Ala
M0078826 CNONEOIJ_00014 15186 3 Skin 0.13 protein_coding synonymous_variant LOW 895C>T Leu299Leu
M0078827 CNONEOIJ_00014 15229 3 Skin 0.13 protein_coding synonymous_variant LOW 852A>G Ala284Ala
M0078828 CNONEOIJ_00014 15250 3 Skin 0.13 protein_coding synonymous_variant LOW 831C>A Thr277Thr
M0078829 CNONEOIJ_00014 15315 3 Skin 0.13 protein_coding missense_variant MODERATE 766C>T Leu256Phe
M0078830 CNONEOIJ_00014 15319 3 Skin 0.13 protein_coding synonymous_variant LOW 762T>C Ser254Ser
M0078831 CNONEOIJ_00014 15322 3 Skin 0.13 protein_coding synonymous_variant LOW 759T>C Ile253Ile
M0078832 CNONEOIJ_00014 15505 3 Skin 0.13 protein_coding synonymous_variant LOW 576G>A Gln192Gln
M0078833 CNONEOIJ_00014 15508 3 Skin 0.13 protein_coding synonymous_variant LOW 573T>C Arg191Arg
M0078834 CNONEOIJ_00014 15562 3 Skin 0.13 protein_coding synonymous_variant LOW 519C>T Ala173Ala
M0078835 CNONEOIJ_00014 15706 3 Skin 0.13 protein_coding synonymous_variant LOW 375G>A Glu125Glu
M0078836 CNONEOIJ_00014 15709 3 Skin 0.13 protein_coding synonymous_variant LOW 372A>T Arg124Arg
M0078837 CNONEOIJ_00014 15754 3 Skin 0.13 protein_coding synonymous_variant LOW 327G>A Gly109Gly
M0078838 CNONEOIJ_00014 15796 3 Skin 0.13 protein_coding synonymous_variant LOW 285T>C Thr95Thr
M0078839 CNONEOIJ_00014 15826 3 Skin 0.13 protein_coding synonymous_variant LOW 255A>G Leu85Leu
M0078840 CNONEOIJ_00014 16000 3 Skin 0.13 protein_coding synonymous_variant LOW 81C>T Ile27Ile
M0078841 CNONEOIJ_00014 16036 3 Skin 0.13 protein_coding synonymous_variant LOW 45C>T Ile15Ile
M0078842 CNONEOIJ_00010 16172 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4603T>G None
M0078843 CNONEOIJ_00015 16234 3 Skin 0.13 protein_coding missense_variant MODERATE 1073T>C Leu358Ser
M0078844 CNONEOIJ_00015 16476 3 Skin 0.13 protein_coding synonymous_variant LOW 831A>T Leu277Leu
M0078845 CNONEOIJ_00015 16485 3 Skin 0.13 protein_coding synonymous_variant LOW 822T>C Ile274Ile
M0078846 CNONEOIJ_00016 18046 3 Skin 0.13 protein_coding synonymous_variant LOW 546C>T Val182Val
M0078847 CNONEOIJ_00016 18049 3 Skin 0.13 protein_coding synonymous_variant LOW 549A>G Ala183Ala
M0078848 CNONEOIJ_00016 18061 3 Skin 0.13 protein_coding synonymous_variant LOW 561T>C Asp187Asp
M0078849 CNONEOIJ_00009 9100 3 Skin 0.13 protein_coding missense_variant MODERATE 1493G>A Gly498Asp
M0078850 CNONEOIJ_00009 9240 3 Skin 0.13 protein_coding synonymous_variant LOW 1353A>G Val451Val
M0078851 CNONEOIJ_00009 9246 3 Skin 0.13 protein_coding synonymous_variant LOW 1347G>A Leu449Leu
M0078852 CNONEOIJ_00009 9921 3 Skin 0.13 protein_coding synonymous_variant LOW 672G>T Gly224Gly
M0078853 CNONEOIJ_00009 10017 4 Skin 0.17 protein_coding synonymous_variant LOW 576G>A Val192Val
M0078854 CNONEOIJ_00009 10139 4 Skin 0.17 protein_coding missense_variant MODERATE 454C>G His152Asp
M0078855 CNONEOIJ_00009 10232 3 Skin 0.13 protein_coding synonymous_variant LOW 361T>C Leu121Leu
M0078856 CNONEOIJ_00009 10335 4 Skin 0.17 protein_coding synonymous_variant LOW 258C>T Leu86Leu
M0078857 CNONEOIJ_00009 10415 4 Skin 0.17 protein_coding synonymous_variant LOW 178C>T Leu60Leu
M0078858 CNONEOIJ_00009 10424 3 Skin 0.13 protein_coding synonymous_variant LOW 169C>T Leu57Leu
M0078859 CNONEOIJ_00015 16329 4 Skin 0.17 protein_coding synonymous_variant LOW 978T>C Gly326Gly
M0078860 CNONEOIJ_00010 10820 3 Skin 0.13 protein_coding synonymous_variant LOW 750C>T Gly250Gly
M0078861 CNONEOIJ_00010 10833 4 Skin 0.17 protein_coding missense_variant MODERATE 737G>A Ser246Asn
M0078862 CNONEOIJ_00010 10834 4 Skin 0.17 protein_coding missense_variant MODERATE 736A>C Ser246Arg
M0078863 CNONEOIJ_00010 11237 3 Skin 0.13 protein_coding synonymous_variant LOW 333T>C Ile111Ile
M0078864 CNONEOIJ_00010 11246 3 Skin 0.13 protein_coding synonymous_variant LOW 324C>T His108His
M0078865 CNONEOIJ_00010 11416 3 Skin 0.13 protein_coding missense_variant MODERATE 154C>A Leu52Ile
M0078866 CNONEOIJ_00010 11417 3 Skin 0.13 protein_coding synonymous_variant LOW 153G>A Glu51Glu
M0078867 CNONEOIJ_00010 11498 3 Skin 0.13 protein_coding synonymous_variant LOW 72T>C Val24Val
M0078868 CNONEOIJ_00007 12593 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4284C>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term