Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3192
  Reference Plasmid   MET0316_bin.10__k81_46879
  Reference Plasmid Size   15682
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0079359 DCKJGCLB_00001 708 4 Skin 0.67 protein_coding synonymous_variant LOW 789T>C Pro263Pro
M0079360 DCKJGCLB_00001 995 4 Skin 0.67 protein_coding synonymous_variant LOW 502T>C Leu168Leu
M0079361 DCKJGCLB_00001 1067 4 Skin 0.67 protein_coding missense_variant MODERATE 430G>A Val144Ile
M0079362 DCKJGCLB_00001 1108 4 Skin 0.67 protein_coding missense_variant MODERATE 389A>G Asp130Gly
M0079363 DCKJGCLB_00001 1124 4 Skin 0.67 protein_coding missense_variant MODERATE 373A>G Thr125Ala
M0079364 DCKJGCLB_00001 1281 3 Skin 0.50 protein_coding missense_variant MODERATE 216C>G Asp72Glu
M0079365 DCKJGCLB_00001 1455 4 Skin 0.67 protein_coding synonymous_variant LOW 42C>G Leu14Leu
M0079366 DCKJGCLB_00002 1578 4 Skin 0.67 protein_coding missense_variant MODERATE 664G>A Ala222Thr
M0079367 DCKJGCLB_00002 1579 4 Skin 0.67 protein_coding synonymous_variant LOW 663T>C Ser221Ser
M0079368 DCKJGCLB_00002 1637 4 Skin 0.67 protein_coding missense_variant MODERATE 605C>A Ala202Asp
M0079369 DCKJGCLB_00002 1759 4 Skin 0.67 protein_coding synonymous_variant LOW 483T>G Leu161Leu
M0079370 DCKJGCLB_00002 1859 4 Skin 0.67 protein_coding missense_variant MODERATE 383C>T Ala128Val
M0079371 DCKJGCLB_00002 1894 4 Skin 0.67 protein_coding synonymous_variant LOW 348A>G Thr116Thr
M0079372 DCKJGCLB_00002 2074 4 Skin 0.67 protein_coding synonymous_variant LOW 168T>C Ala56Ala
M0079373 DCKJGCLB_00002 2175 4 Skin 0.67 protein_coding synonymous_variant LOW 67C>T Leu23Leu
M0079374 DCKJGCLB_00002 2188 3 Skin 0.50 protein_coding synonymous_variant LOW 54C>A Ala18Ala
M0079375 DCKJGCLB_00003 3077 3 Skin 0.50 protein_coding synonymous_variant LOW 231T>C Gly77Gly
M0079376 DCKJGCLB_00003 3101 3 Skin 0.50 protein_coding synonymous_variant LOW 207C>T Leu69Leu
M0079377 DCKJGCLB_00001 68 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *205T>C None
M0079378 DCKJGCLB_00001 95 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *178G>A None
M0079379 DCKJGCLB_00001 120 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *153C>T None
M0079380 DCKJGCLB_00001 224 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *49C>T None
M0079381 DCKJGCLB_00001 269 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *4C>G None
M0079382 DCKJGCLB_00001 315 3 Skin 0.50 protein_coding synonymous_variant LOW 1182T>C Gly394Gly
M0079383 DCKJGCLB_00001 327 3 Skin 0.50 protein_coding synonymous_variant LOW 1170C>T Ala390Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DCKJGCLB_00009 QIR68979.1|GH77 99.3 0 1 743 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term