Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3196
  Reference Plasmid   MET0332_bin.9__k81_78454
  Reference Plasmid Size   9175
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0079503 DBHKPEBN_00002 1913 4 Skin 0.33 protein_coding synonymous_variant LOW 606A>G Val202Val
M0079504 DBHKPEBN_00002 2050 6 Skin 0.50 protein_coding missense_variant MODERATE 469G>A Ala157Thr
M0079505 DBHKPEBN_00002 2429 6 Skin 0.50 protein_coding synonymous_variant LOW 90T>C Leu30Leu
M0079506 DBHKPEBN_00002 2435 4 Skin 0.33 protein_coding synonymous_variant LOW 84A>G Leu28Leu
M0079507 DBHKPEBN_00002 2441 6 Skin 0.50 protein_coding synonymous_variant LOW 78T>C His26His
M0079508 DBHKPEBN_00003 2691 7 Skin 0.58 protein_coding synonymous_variant LOW 646C>T Leu216Leu
M0079509 DBHKPEBN_00003 2750 4 Skin 0.33 protein_coding missense_variant MODERATE 587C>A Ala196Glu
M0079510 DBHKPEBN_00003 2844 7 Skin 0.58 protein_coding missense_variant MODERATE 493T>C Tyr165His
M0079511 DBHKPEBN_00003 3229 6 Skin 0.50 protein_coding synonymous_variant LOW 108T>C Gly36Gly
M0079512 DBHKPEBN_00003 3235 6 Skin 0.50 protein_coding synonymous_variant LOW 102A>G Glu34Glu
M0079513 DBHKPEBN_00003 3259 4 Skin 0.33 protein_coding synonymous_variant LOW 78G>A Ala26Ala
M0079514 DBHKPEBN_00003 3307 5 Skin 0.42 protein_coding synonymous_variant LOW 30C>T Ser10Ser
M0079515 DBHKPEBN_00002 3420 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -902T>A None
M0079516 DBHKPEBN_00002 3471 6 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -953G>T None
M0079517 DBHKPEBN_00004 3533 9 Skin 0.75 protein_coding stop_lost&splice_region_variant HIGH 1084T>C Ter362Glnext*?
M0079518 DBHKPEBN_00004 3534 6 Skin 0.50 protein_coding synonymous_variant LOW 1083G>C Gly361Gly
M0079519 DBHKPEBN_00004 3555 6 Skin 0.50 protein_coding synonymous_variant LOW 1062C>T Gly354Gly
M0079520 DBHKPEBN_00004 3806 7 Skin 0.58 protein_coding missense_variant MODERATE 811A>G Thr271Ala
M0079521 DBHKPEBN_00005 4799 5 Skin 0.42 protein_coding synonymous_variant LOW 2430C>T Ile810Ile
M0079522 DBHKPEBN_00001 379 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -49G>T None
M0079523 DBHKPEBN_00001 768 4 Skin 0.33 protein_coding missense_variant MODERATE 341C>A Ala114Asp
M0079524 DBHKPEBN_00001 772 4 Skin 0.33 protein_coding synonymous_variant LOW 345C>T Asp115Asp
M0079525 DBHKPEBN_00001 1021 5 Skin 0.42 protein_coding synonymous_variant LOW 594G>A Thr198Thr
M0079526 DBHKPEBN_00001 1033 4 Skin 0.33 protein_coding synonymous_variant LOW 606T>C Leu202Leu
M0079527 DBHKPEBN_00002 1610 5 Skin 0.42 protein_coding synonymous_variant LOW 909A>G Leu303Leu
M0079528 DBHKPEBN_00002 1625 5 Skin 0.42 protein_coding synonymous_variant LOW 894A>G Leu298Leu
M0079529 DBHKPEBN_00002 1664 3 Skin 0.25 protein_coding synonymous_variant LOW 855T>G Leu285Leu
M0079530 DBHKPEBN_00002 1790 6 Skin 0.50 protein_coding synonymous_variant LOW 729T>C His243His
M0079531 DBHKPEBN_00002 2078 4 Skin 0.33 protein_coding synonymous_variant LOW 441C>T Val147Val
M0079532 DBHKPEBN_00002 2147 5 Skin 0.42 protein_coding synonymous_variant LOW 372G>A Glu124Glu
M0079533 DBHKPEBN_00003 2962 3 Skin 0.25 protein_coding synonymous_variant LOW 375T>C Tyr125Tyr
M0079534 DBHKPEBN_00003 2968 4 Skin 0.33 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0079535 DBHKPEBN_00003 2980 4 Skin 0.33 protein_coding synonymous_variant LOW 357T>C Pro119Pro
M0079536 DBHKPEBN_00003 2989 4 Skin 0.33 protein_coding synonymous_variant LOW 348T>C Ile116Ile
M0079537 DBHKPEBN_00005 4704 3 Skin 0.25 protein_coding missense_variant MODERATE 2525A>G Gln842Arg
M0079538 DBHKPEBN_00005 4727 4 Skin 0.33 protein_coding synonymous_variant LOW 2502A>G Gln834Gln
M0079539 DBHKPEBN_00005 4736 3 Skin 0.25 protein_coding synonymous_variant LOW 2493G>A Leu831Leu
M0079540 DBHKPEBN_00005 4751 3 Skin 0.25 protein_coding synonymous_variant LOW 2478T>C Asn826Asn
M0079541 DBHKPEBN_00005 4763 3 Skin 0.25 protein_coding synonymous_variant LOW 2466C>G Val822Val
M0079542 DBHKPEBN_00005 4772 3 Skin 0.25 protein_coding synonymous_variant LOW 2457G>A Gln819Gln
M0079543 DBHKPEBN_00005 4775 3 Skin 0.25 protein_coding synonymous_variant LOW 2454G>A Gly818Gly
M0079544 DBHKPEBN_00005 4778 3 Skin 0.25 protein_coding synonymous_variant LOW 2451T>C Ser817Ser
M0079545 DBHKPEBN_00005 5675 3 Skin 0.25 protein_coding synonymous_variant LOW 1554G>A Val518Val
M0079546 DBHKPEBN_00005 5744 7 Skin 0.58 protein_coding synonymous_variant LOW 1485C>T Ser495Ser
M0079547 DBHKPEBN_00005 6005 7 Skin 0.58 protein_coding synonymous_variant LOW 1224T>C Gly408Gly
M0079548 DBHKPEBN_00005 6440 3 Skin 0.25 protein_coding synonymous_variant LOW 789A>G Gln263Gln
M0079549 DBHKPEBN_00005 6557 3 Skin 0.25 protein_coding synonymous_variant LOW 672T>C Ser224Ser
M0079550 DBHKPEBN_00005 6560 3 Skin 0.25 protein_coding synonymous_variant LOW 669T>G Ser223Ser
M0079551 DBHKPEBN_00005 6572 3 Skin 0.25 protein_coding synonymous_variant LOW 657T>C Tyr219Tyr
M0079552 DBHKPEBN_00005 6595 5 Skin 0.42 protein_coding missense_variant MODERATE 634G>A Val212Ile
M0079553 DBHKPEBN_00005 6770 5 Skin 0.42 protein_coding synonymous_variant LOW 459T>C Thr153Thr
M0079554 DBHKPEBN_00005 6809 5 Skin 0.42 protein_coding synonymous_variant LOW 420A>G Gln140Gln
M0079555 DBHKPEBN_00003 7985 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4649G>C None
M0079556 DBHKPEBN_00007 8250 3 Skin 0.25 protein_coding synonymous_variant LOW 360T>G Thr120Thr
M0079557 DBHKPEBN_00007 8262 3 Skin 0.25 protein_coding synonymous_variant LOW 348C>T Ala116Ala
M0079558 DBHKPEBN_00007 8316 3 Skin 0.25 protein_coding synonymous_variant LOW 294G>A Thr98Thr
M0079559 DBHKPEBN_00007 8346 4 Skin 0.33 protein_coding synonymous_variant LOW 264A>T Ile88Ile
M0079560 DBHKPEBN_00004 8802 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4186C>T None
M0079561 DBHKPEBN_00004 8873 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4257C>T None
M0079562 DBHKPEBN_00003 2701 3 Skin 0.25 protein_coding synonymous_variant LOW 636C>T Phe212Phe
M0079563 DBHKPEBN_00005 4928 3 Skin 0.25 protein_coding synonymous_variant LOW 2301G>A Ala767Ala
M0079564 DBHKPEBN_00005 4934 3 Skin 0.25 protein_coding synonymous_variant LOW 2295T>G Pro765Pro
M0079565 DBHKPEBN_00005 5831 5 Skin 0.42 protein_coding synonymous_variant LOW 1398T>C Gly466Gly
M0079566 DBHKPEBN_00005 7141 4 Skin 0.33 protein_coding missense_variant MODERATE 88C>G Pro30Ala
M0079567 DBHKPEBN_00005 5261 4 Skin 0.33 protein_coding missense_variant MODERATE 1968T>A Phe656Leu
M0079568 DBHKPEBN_00005 5463 3 Skin 0.25 protein_coding missense_variant MODERATE 1766G>A Ser589Asn
M0079569 DBHKPEBN_00005 5783 4 Skin 0.33 protein_coding synonymous_variant LOW 1446G>A Gly482Gly
M0079570 DBHKPEBN_00005 5900 3 Skin 0.25 protein_coding synonymous_variant LOW 1329T>C Asp443Asp
M0079571 DBHKPEBN_00005 5910 3 Skin 0.25 protein_coding missense_variant MODERATE 1319G>A Gly440Asp
M0079572 DBHKPEBN_00005 5916 4 Skin 0.33 protein_coding missense_variant MODERATE 1313C>G Thr438Ser
M0079573 DBHKPEBN_00005 5933 4 Skin 0.33 protein_coding synonymous_variant LOW 1296A>G Ser432Ser
M0079574 DBHKPEBN_00005 5960 3 Skin 0.25 protein_coding synonymous_variant LOW 1269G>T Gly423Gly
M0079575 DBHKPEBN_00005 5984 4 Skin 0.33 protein_coding synonymous_variant LOW 1245T>G Gly415Gly
M0079576 DBHKPEBN_00005 6070 3 Skin 0.25 protein_coding missense_variant MODERATE 1159G>A Val387Ile
M0079577 DBHKPEBN_00005 6167 3 Skin 0.25 protein_coding synonymous_variant LOW 1062T>C Phe354Phe
M0079578 DBHKPEBN_00005 6170 3 Skin 0.25 protein_coding synonymous_variant LOW 1059A>G Pro353Pro
M0079579 DBHKPEBN_00005 6275 3 Skin 0.25 protein_coding synonymous_variant LOW 954A>G Ala318Ala
M0079580 DBHKPEBN_00005 6329 3 Skin 0.25 protein_coding synonymous_variant LOW 900C>T Asn300Asn
M0079581 DBHKPEBN_00005 6332 3 Skin 0.25 protein_coding synonymous_variant LOW 897C>A Thr299Thr
M0079582 DBHKPEBN_00005 6356 3 Skin 0.25 protein_coding synonymous_variant LOW 873G>A Pro291Pro
M0079583 DBHKPEBN_00005 6410 3 Skin 0.25 protein_coding synonymous_variant LOW 819C>T Ile273Ile
M0079584 DBHKPEBN_00006 7356 3 Skin 0.25 protein_coding synonymous_variant LOW 627G>A Thr209Thr
M0079585 DBHKPEBN_00001 286 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -142G>C None
M0079586 DBHKPEBN_00001 404 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -24A>G None
M0079587 DBHKPEBN_00001 902 3 Skin 0.25 protein_coding missense_variant MODERATE 475A>G Met159Val
M0079588 DBHKPEBN_00001 961 3 Skin 0.25 protein_coding synonymous_variant LOW 534T>C His178His
M0079589 DBHKPEBN_00001 1144 3 Skin 0.25 protein_coding synonymous_variant LOW 717G>A Leu239Leu
M0079590 DBHKPEBN_00001 1153 3 Skin 0.25 protein_coding synonymous_variant LOW 726G>A Arg242Arg
M0079591 DBHKPEBN_00001 1351 4 Skin 0.33 protein_coding synonymous_variant LOW 924G>A Ala308Ala
M0079592 DBHKPEBN_00002 1577 3 Skin 0.25 protein_coding synonymous_variant LOW 942T>C Arg314Arg
M0079593 DBHKPEBN_00002 1661 3 Skin 0.25 protein_coding synonymous_variant LOW 858A>G Ala286Ala
M0079594 DBHKPEBN_00002 1796 3 Skin 0.25 protein_coding synonymous_variant LOW 723A>T Ala241Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term