Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3201
  Reference Plasmid   MET0353_bin.52__k81_232661
  Reference Plasmid Size   21953
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0150625 FMJFKFID_00008 11301 3 Gut 0.60 protein_coding synonymous_variant LOW 840T>C Ser280Ser
M0150626 FMJFKFID_00008 11370 3 Gut 0.60 protein_coding synonymous_variant LOW 909T>C Leu303Leu
M0150627 FMJFKFID_00008 11532 3 Gut 0.60 protein_coding synonymous_variant LOW 1071A>G Val357Val
M0150628 FMJFKFID_00008 11710 3 Gut 0.60 protein_coding missense_variant MODERATE 1249A>G Asn417Asp
M0150629 FMJFKFID_00009 12058 3 Gut 0.60 protein_coding synonymous_variant LOW 189C>T Asn63Asn
M0150630 FMJFKFID_00009 12061 3 Gut 0.60 protein_coding synonymous_variant LOW 192T>C Gly64Gly
M0150631 FMJFKFID_00009 12095 3 Gut 0.60 protein_coding missense_variant MODERATE 226G>T Ala76Ser
M0150632 FMJFKFID_00009 12203 3 Gut 0.60 protein_coding synonymous_variant LOW 334T>C Leu112Leu
M0150633 FMJFKFID_00009 12205 3 Gut 0.60 protein_coding missense_variant MODERATE 336A>T Leu112Phe
M0150634 FMJFKFID_00009 12271 3 Gut 0.60 protein_coding synonymous_variant LOW 402C>A Ile134Ile
M0150635 FMJFKFID_00016 19469 4 Gut 0.80 protein_coding synonymous_variant LOW 723T>C Ser241Ser
M0150636 FMJFKFID_00016 19487 3 Gut 0.60 protein_coding synonymous_variant LOW 741A>C Gly247Gly
M0150637 FMJFKFID_00016 19512 3 Gut 0.60 protein_coding missense_variant MODERATE 766G>A Ala256Thr
M0150638 FMJFKFID_00016 19554 3 Gut 0.60 protein_coding missense_variant MODERATE 808A>G Thr270Ala
M0150639 FMJFKFID_00016 19574 3 Gut 0.60 protein_coding synonymous_variant LOW 828T>A Leu276Leu
M0150640 FMJFKFID_00016 19586 3 Gut 0.60 protein_coding synonymous_variant LOW 840A>T Ala280Ala
M0150641 FMJFKFID_00016 19589 3 Gut 0.60 protein_coding synonymous_variant LOW 843C>T Leu281Leu
M0150642 FMJFKFID_00016 19622 3 Gut 0.60 protein_coding synonymous_variant LOW 876T>C Ser292Ser
M0150643 FMJFKFID_00016 19685 5 Gut 1.00 protein_coding synonymous_variant LOW 939T>A Thr313Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FMJFKFID_00007 CBK91595.1|GT4 99.4 0 1 496 1 1
FMJFKFID_00008 CBK92843.1|GT8 99.6 0 1 457 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term