Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C26
  Reference Plasmid   MET0354_bin.21__k81_107371
  Reference Plasmid Size   11688
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0079677 PEKFKIBA_00004 6552 3 Skin 0.27 protein_coding missense_variant MODERATE 388C>A Pro130Thr
M0079678 PEKFKIBA_00004 6559 4 Skin 0.36 protein_coding synonymous_variant LOW 381A>G Ala127Ala
M0079679 PEKFKIBA_00004 6571 4 Skin 0.36 protein_coding synonymous_variant LOW 369T>C Arg123Arg
M0079680 PEKFKIBA_00005 8060 5 Skin 0.45 protein_coding missense_variant MODERATE 1931T>C Val644Ala
M0079681 PEKFKIBA_00005 8812 3 Skin 0.27 protein_coding synonymous_variant LOW 1179G>A Pro393Pro
M0079682 PEKFKIBA_00005 9151 3 Skin 0.27 protein_coding synonymous_variant LOW 840C>T Gly280Gly
M0079683 PEKFKIBA_00005 9400 3 Skin 0.27 protein_coding synonymous_variant LOW 591T>A Ala197Ala
M0079684 PEKFKIBA_00006 10159 4 Skin 0.36 protein_coding synonymous_variant LOW 1455G>C Val485Val
M0079685 PEKFKIBA_00006 10843 3 Skin 0.27 protein_coding synonymous_variant LOW 771G>A Lys257Lys
M0079686 PEKFKIBA_00001 145 3 Skin 0.27 protein_coding downstream_gene_variant MODIFIER *377G>A None
M0079687 PEKFKIBA_00001 153 3 Skin 0.27 protein_coding downstream_gene_variant MODIFIER *369C>A None
M0079688 PEKFKIBA_00001 165 3 Skin 0.27 protein_coding downstream_gene_variant MODIFIER *357G>A None
M0079689 PEKFKIBA_00001 384 3 Skin 0.27 protein_coding downstream_gene_variant MODIFIER *138T>A None
M0079690 PEKFKIBA_00001 573 4 Skin 0.36 protein_coding synonymous_variant LOW 717A>G Leu239Leu
M0079691 PEKFKIBA_00001 645 3 Skin 0.27 protein_coding synonymous_variant LOW 645T>A Ile215Ile
M0079692 PEKFKIBA_00002 2308 3 Skin 0.27 protein_coding synonymous_variant LOW 951G>A Ala317Ala
M0079693 PEKFKIBA_00002 2368 3 Skin 0.27 protein_coding synonymous_variant LOW 891G>T Ser297Ser
M0079694 PEKFKIBA_00002 2392 3 Skin 0.27 protein_coding synonymous_variant LOW 867A>T Ala289Ala
M0079695 PEKFKIBA_00002 2428 3 Skin 0.27 protein_coding synonymous_variant LOW 831G>A Lys277Lys
M0079696 PEKFKIBA_00002 2596 3 Skin 0.27 protein_coding synonymous_variant LOW 663C>G Thr221Thr
M0079697 PEKFKIBA_00002 2617 3 Skin 0.27 protein_coding synonymous_variant LOW 642T>C Ser214Ser
M0079698 PEKFKIBA_00002 2731 3 Skin 0.27 protein_coding synonymous_variant LOW 528A>C Leu176Leu
M0079699 PEKFKIBA_00002 2776 3 Skin 0.27 protein_coding synonymous_variant LOW 483A>G Ala161Ala
M0079700 PEKFKIBA_00002 2917 3 Skin 0.27 protein_coding synonymous_variant LOW 342C>T Asn114Asn
M0079701 PEKFKIBA_00002 3142 3 Skin 0.27 protein_coding synonymous_variant LOW 117C>T Tyr39Tyr
M0079702 PEKFKIBA_00003 3390 3 Skin 0.27 protein_coding synonymous_variant LOW 858A>G Ala286Ala
M0079703 PEKFKIBA_00003 3411 3 Skin 0.27 protein_coding synonymous_variant LOW 837A>G Val279Val
M0079704 PEKFKIBA_00003 3429 3 Skin 0.27 protein_coding synonymous_variant LOW 819A>G Gln273Gln
M0079705 PEKFKIBA_00003 3554 3 Skin 0.27 protein_coding missense_variant MODERATE 694A>G Asn232Asp
M0079706 PEKFKIBA_00003 3819 5 Skin 0.45 protein_coding synonymous_variant LOW 429G>A Val143Val
M0079707 PEKFKIBA_00003 3837 4 Skin 0.36 protein_coding synonymous_variant LOW 411C>T Val137Val
M0079708 PEKFKIBA_00003 3849 4 Skin 0.36 protein_coding synonymous_variant LOW 399A>G Glu133Glu
M0079709 PEKFKIBA_00003 3993 4 Skin 0.36 protein_coding synonymous_variant LOW 255G>A Val85Val
M0079710 PEKFKIBA_00004 4492 3 Skin 0.27 protein_coding synonymous_variant LOW 2448C>T Arg816Arg
M0079711 PEKFKIBA_00004 4826 3 Skin 0.27 protein_coding missense_variant MODERATE 2114A>C Lys705Thr
M0079712 PEKFKIBA_00004 4827 3 Skin 0.27 protein_coding missense_variant MODERATE 2113A>C Lys705Gln
M0079713 PEKFKIBA_00004 5863 3 Skin 0.27 protein_coding synonymous_variant LOW 1077T>A Arg359Arg
M0079714 PEKFKIBA_00004 5908 4 Skin 0.36 protein_coding synonymous_variant LOW 1032T>G Val344Val
M0079715 PEKFKIBA_00004 5932 4 Skin 0.36 protein_coding synonymous_variant LOW 1008T>C Phe336Phe
M0079716 PEKFKIBA_00004 5986 4 Skin 0.36 protein_coding synonymous_variant LOW 954A>G Glu318Glu
M0079717 PEKFKIBA_00004 6133 4 Skin 0.36 protein_coding synonymous_variant LOW 807A>G Pro269Pro
M0079718 PEKFKIBA_00004 6261 4 Skin 0.36 protein_coding synonymous_variant LOW 679T>C Leu227Leu
M0079719 PEKFKIBA_00004 6691 3 Skin 0.27 protein_coding synonymous_variant LOW 249T>A Ala83Ala
M0079720 PEKFKIBA_00004 6844 3 Skin 0.27 protein_coding synonymous_variant LOW 96T>C Ala32Ala
M0079721 PEKFKIBA_00005 7288 3 Skin 0.27 protein_coding synonymous_variant LOW 2703C>T Thr901Thr
M0079722 PEKFKIBA_00005 7345 3 Skin 0.27 protein_coding synonymous_variant LOW 2646T>C Ser882Ser
M0079723 PEKFKIBA_00005 7639 3 Skin 0.27 protein_coding synonymous_variant LOW 2352A>G Leu784Leu
M0079724 PEKFKIBA_00005 8335 3 Skin 0.27 protein_coding synonymous_variant LOW 1656G>T Gly552Gly
M0079725 PEKFKIBA_00005 8338 3 Skin 0.27 protein_coding synonymous_variant LOW 1653G>C Gly551Gly
M0079726 PEKFKIBA_00005 8752 3 Skin 0.27 protein_coding synonymous_variant LOW 1239C>T Asp413Asp
M0079727 PEKFKIBA_00005 8881 3 Skin 0.27 protein_coding synonymous_variant LOW 1110T>C Tyr370Tyr
M0079728 PEKFKIBA_00005 8953 3 Skin 0.27 protein_coding synonymous_variant LOW 1038C>T Ser346Ser
M0079729 PEKFKIBA_00005 9163 3 Skin 0.27 protein_coding synonymous_variant LOW 828A>G Gln276Gln
M0079730 PEKFKIBA_00005 9853 3 Skin 0.27 protein_coding synonymous_variant LOW 138A>T Ser46Ser
M0079731 PEKFKIBA_00006 10216 3 Skin 0.27 protein_coding synonymous_variant LOW 1398A>G Thr466Thr
M0079732 PEKFKIBA_00003 3675 3 Skin 0.27 protein_coding synonymous_variant LOW 573A>C Gly191Gly
M0079733 PEKFKIBA_00003 3704 3 Skin 0.27 protein_coding missense_variant MODERATE 544A>T Thr182Ser
M0079734 PEKFKIBA_00003 3729 3 Skin 0.27 protein_coding synonymous_variant LOW 519A>T Pro173Pro
M0079735 PEKFKIBA_00003 3732 3 Skin 0.27 protein_coding synonymous_variant LOW 516G>A Glu172Glu
M0133517 PEKFKIBA_00003 3411 3 Oral 0.38 protein_coding synonymous_variant LOW 837A>G Val279Val
M0133518 PEKFKIBA_00003 3429 3 Oral 0.38 protein_coding synonymous_variant LOW 819A>G Gln273Gln
M0133519 PEKFKIBA_00003 3554 5 Oral 0.63 protein_coding missense_variant MODERATE 694A>G Asn232Asp
M0133520 PEKFKIBA_00003 3675 3 Oral 0.38 protein_coding synonymous_variant LOW 573A>C Gly191Gly
M0133521 PEKFKIBA_00003 3704 3 Oral 0.38 protein_coding missense_variant MODERATE 544A>T Thr182Ser
M0133522 PEKFKIBA_00003 3819 3 Oral 0.38 protein_coding synonymous_variant LOW 429G>A Val143Val
M0133523 PEKFKIBA_00003 3993 4 Oral 0.50 protein_coding synonymous_variant LOW 255G>A Val85Val
M0133524 PEKFKIBA_00003 4183 3 Oral 0.38 protein_coding missense_variant MODERATE 65A>G Asn22Ser
M0133525 PEKFKIBA_00004 4492 3 Oral 0.38 protein_coding synonymous_variant LOW 2448C>T Arg816Arg
M0133526 PEKFKIBA_00004 4826 3 Oral 0.38 protein_coding missense_variant MODERATE 2114A>C Lys705Thr
M0133527 PEKFKIBA_00004 4827 3 Oral 0.38 protein_coding missense_variant MODERATE 2113A>C Lys705Gln
M0133528 PEKFKIBA_00004 5452 3 Oral 0.38 protein_coding synonymous_variant LOW 1488A>G Pro496Pro
M0133529 PEKFKIBA_00004 5620 3 Oral 0.38 protein_coding synonymous_variant LOW 1320A>C Pro440Pro
M0133530 PEKFKIBA_00004 5863 4 Oral 0.50 protein_coding synonymous_variant LOW 1077T>A Arg359Arg
M0133531 PEKFKIBA_00004 5875 4 Oral 0.50 protein_coding synonymous_variant LOW 1065C>T Phe355Phe
M0133532 PEKFKIBA_00004 5908 4 Oral 0.50 protein_coding synonymous_variant LOW 1032T>G Val344Val
M0133533 PEKFKIBA_00004 5932 5 Oral 0.63 protein_coding synonymous_variant LOW 1008T>C Phe336Phe
M0133534 PEKFKIBA_00004 5986 5 Oral 0.63 protein_coding synonymous_variant LOW 954A>G Glu318Glu
M0133535 PEKFKIBA_00004 6012 4 Oral 0.50 protein_coding missense_variant MODERATE 928T>C Phe310Leu
M0133536 PEKFKIBA_00004 6070 3 Oral 0.38 protein_coding synonymous_variant LOW 870T>C Asn290Asn
M0133537 PEKFKIBA_00004 6097 3 Oral 0.38 protein_coding synonymous_variant LOW 843T>C Gly281Gly
M0133538 PEKFKIBA_00004 6133 4 Oral 0.50 protein_coding synonymous_variant LOW 807A>G Pro269Pro
M0133539 PEKFKIBA_00004 6261 5 Oral 0.63 protein_coding synonymous_variant LOW 679T>C Leu227Leu
M0133540 PEKFKIBA_00004 6559 5 Oral 0.63 protein_coding synonymous_variant LOW 381A>G Ala127Ala
M0133541 PEKFKIBA_00004 6571 4 Oral 0.50 protein_coding synonymous_variant LOW 369T>C Arg123Arg
M0133542 PEKFKIBA_00004 6691 4 Oral 0.50 protein_coding synonymous_variant LOW 249T>A Ala83Ala
M0133543 PEKFKIBA_00004 6844 6 Oral 0.75 protein_coding synonymous_variant LOW 96T>C Ala32Ala
M0133544 PEKFKIBA_00005 7288 5 Oral 0.63 protein_coding synonymous_variant LOW 2703C>T Thr901Thr
M0133545 PEKFKIBA_00005 7345 5 Oral 0.63 protein_coding synonymous_variant LOW 2646T>C Ser882Ser
M0133546 PEKFKIBA_00005 7471 5 Oral 0.63 protein_coding synonymous_variant LOW 2520G>T Ala840Ala
M0133547 PEKFKIBA_00005 7825 3 Oral 0.38 protein_coding synonymous_variant LOW 2166C>T Asp722Asp
M0133548 PEKFKIBA_00005 7866 3 Oral 0.38 protein_coding synonymous_variant LOW 2125T>C Leu709Leu
M0133549 PEKFKIBA_00005 8060 5 Oral 0.63 protein_coding missense_variant MODERATE 1931T>C Val644Ala
M0133550 PEKFKIBA_00005 8335 5 Oral 0.63 protein_coding synonymous_variant LOW 1656G>T Gly552Gly
M0133551 PEKFKIBA_00005 8338 5 Oral 0.63 protein_coding synonymous_variant LOW 1653G>C Gly551Gly
M0133552 PEKFKIBA_00005 8752 5 Oral 0.63 protein_coding synonymous_variant LOW 1239C>T Asp413Asp
M0133553 PEKFKIBA_00005 9397 3 Oral 0.38 protein_coding synonymous_variant LOW 594C>A Pro198Pro
M0133554 PEKFKIBA_00005 9400 3 Oral 0.38 protein_coding synonymous_variant LOW 591T>A Ala197Ala
M0133555 PEKFKIBA_00005 9496 5 Oral 0.63 protein_coding synonymous_variant LOW 495A>G Ala165Ala
M0133556 PEKFKIBA_00005 9640 5 Oral 0.63 protein_coding synonymous_variant LOW 351A>G Ala117Ala
M0133557 PEKFKIBA_00005 9649 5 Oral 0.63 protein_coding synonymous_variant LOW 342C>T Tyr114Tyr
M0133558 PEKFKIBA_00005 9853 5 Oral 0.63 protein_coding synonymous_variant LOW 138A>T Ser46Ser
M0133559 PEKFKIBA_00006 10128 4 Oral 0.50 protein_coding synonymous_variant LOW 1486C>T Leu496Leu
M0133560 PEKFKIBA_00006 10159 3 Oral 0.38 protein_coding synonymous_variant LOW 1455G>A Val485Val
M0133561 PEKFKIBA_00001 573 3 Oral 0.38 protein_coding synonymous_variant LOW 717A>G Leu239Leu
M0133562 PEKFKIBA_00002 2776 3 Oral 0.38 protein_coding synonymous_variant LOW 483A>G Ala161Ala
M0133563 PEKFKIBA_00005 7189 3 Oral 0.38 protein_coding synonymous_variant LOW 2802C>T Arg934Arg
M0133564 PEKFKIBA_00005 7204 3 Oral 0.38 protein_coding synonymous_variant LOW 2787C>T Leu929Leu
M0133565 PEKFKIBA_00005 7405 4 Oral 0.50 protein_coding synonymous_variant LOW 2586T>C Thr862Thr
M0133566 PEKFKIBA_00005 8881 3 Oral 0.38 protein_coding synonymous_variant LOW 1110T>C Tyr370Tyr
M0133567 PEKFKIBA_00005 8887 3 Oral 0.38 protein_coding synonymous_variant LOW 1104C>T Ala368Ala
M0133568 PEKFKIBA_00005 9151 3 Oral 0.38 protein_coding synonymous_variant LOW 840C>T Gly280Gly
M0133569 PEKFKIBA_00005 9163 3 Oral 0.38 protein_coding synonymous_variant LOW 828A>G Gln276Gln
M0133570 PEKFKIBA_00005 9193 3 Oral 0.38 protein_coding synonymous_variant LOW 798G>T Thr266Thr
M0133571 PEKFKIBA_00006 10087 4 Oral 0.50 protein_coding synonymous_variant LOW 1527A>C Ala509Ala
M0133572 PEKFKIBA_00006 10294 3 Oral 0.38 protein_coding synonymous_variant LOW 1320G>A Lys440Lys
M0133573 PEKFKIBA_00006 10550 3 Oral 0.38 protein_coding missense_variant MODERATE 1064A>G Asp355Gly
M0133574 PEKFKIBA_00006 10798 3 Oral 0.38 protein_coding synonymous_variant LOW 816G>A Arg272Arg
M0133575 PEKFKIBA_00005 7420 3 Oral 0.38 protein_coding synonymous_variant LOW 2571C>T Arg857Arg
M0133576 PEKFKIBA_00005 9793 3 Oral 0.38 protein_coding synonymous_variant LOW 198C>T Cys66Cys
M0133577 PEKFKIBA_00006 10216 3 Oral 0.38 protein_coding synonymous_variant LOW 1398A>G Thr466Thr
M0133578 PEKFKIBA_00006 10265 3 Oral 0.38 protein_coding missense_variant MODERATE 1349G>A Gly450Asp
M0133579 PEKFKIBA_00006 10266 3 Oral 0.38 protein_coding missense_variant MODERATE 1348G>A Gly450Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term