Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3215
  Reference Plasmid   MET0438_bin.2__k81_10040
  Reference Plasmid Size   7480
  Reference Plasmid GC Content   0.54
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0080164 HDBPCNLF_00001 619 4 Skin 0.40 protein_coding synonymous_variant LOW 567C>T Asp189Asp
M0080165 HDBPCNLF_00001 1376 7 Skin 0.70 protein_coding missense_variant MODERATE 1324A>G Lys442Glu
M0080166 HDBPCNLF_00001 1412 7 Skin 0.70 protein_coding synonymous_variant LOW 1360C>T Leu454Leu
M0080167 HDBPCNLF_00002 1998 8 Skin 0.80 protein_coding synonymous_variant LOW 339T>G Leu113Leu
M0080168 HDBPCNLF_00002 2202 7 Skin 0.70 protein_coding synonymous_variant LOW 543C>A Ser181Ser
M0080169 HDBPCNLF_00002 2280 7 Skin 0.70 protein_coding synonymous_variant LOW 621A>G Gly207Gly
M0080170 HDBPCNLF_00003 2319 7 Skin 0.70 protein_coding missense_variant MODERATE 17A>C Gln6Pro
M0080171 HDBPCNLF_00003 2384 8 Skin 0.80 protein_coding missense_variant MODERATE 82G>A Val28Ile
M0080172 HDBPCNLF_00003 3244 5 Skin 0.50 protein_coding synonymous_variant LOW 942A>G Ala314Ala
M0080173 HDBPCNLF_00003 3313 5 Skin 0.50 protein_coding synonymous_variant LOW 1011A>G Glu337Glu
M0080174 HDBPCNLF_00003 3326 7 Skin 0.70 protein_coding missense_variant MODERATE 1024A>G Met342Val
M0080175 HDBPCNLF_00003 3831 7 Skin 0.70 protein_coding missense_variant MODERATE 1529A>G Gln510Arg
M0080176 HDBPCNLF_00003 4042 7 Skin 0.70 protein_coding synonymous_variant LOW 1740G>T Ala580Ala
M0080177 HDBPCNLF_00003 4087 6 Skin 0.60 protein_coding synonymous_variant LOW 1785A>G Leu595Leu
M0080178 HDBPCNLF_00003 4168 8 Skin 0.80 protein_coding synonymous_variant LOW 1866T>C Tyr622Tyr
M0080179 HDBPCNLF_00003 4450 9 Skin 0.90 protein_coding synonymous_variant LOW 2148T>A Ala716Ala
M0080180 HDBPCNLF_00003 4492 4 Skin 0.40 protein_coding synonymous_variant LOW 2190C>T Ser730Ser
M0080181 HDBPCNLF_00003 4555 3 Skin 0.30 protein_coding synonymous_variant LOW 2253C>T Ile751Ile
M0080182 HDBPCNLF_00003 4567 3 Skin 0.30 protein_coding synonymous_variant LOW 2265T>G Pro755Pro
M0080183 HDBPCNLF_00003 4571 3 Skin 0.30 protein_coding missense_variant MODERATE 2269A>T Ile757Phe
M0080184 HDBPCNLF_00003 4588 6 Skin 0.60 protein_coding synonymous_variant LOW 2286T>A Ile762Ile
M0080185 HDBPCNLF_00003 5173 3 Skin 0.30 protein_coding synonymous_variant LOW 2871C>T Arg957Arg
M0080186 HDBPCNLF_00003 5287 8 Skin 0.80 protein_coding synonymous_variant LOW 2985G>T Thr995Thr
M0080187 HDBPCNLF_00003 5330 5 Skin 0.50 protein_coding synonymous_variant LOW 3028T>C Leu1010Leu
M0080188 HDBPCNLF_00003 5518 8 Skin 0.80 protein_coding synonymous_variant LOW 3216A>G Leu1072Leu
M0080189 HDBPCNLF_00003 5533 8 Skin 0.80 protein_coding synonymous_variant LOW 3231T>G Ser1077Ser
M0080190 HDBPCNLF_00003 5540 8 Skin 0.80 protein_coding missense_variant MODERATE 3238A>G Ile1080Val
M0080191 HDBPCNLF_00003 5646 8 Skin 0.80 protein_coding missense_variant MODERATE 3344C>A Ala1115Asp
M0080192 HDBPCNLF_00003 5661 9 Skin 0.90 protein_coding missense_variant MODERATE 3359A>C Tyr1120Ser
M0080193 HDBPCNLF_00004 5690 8 Skin 0.80 protein_coding synonymous_variant LOW 39A>G Lys13Lys
M0080194 HDBPCNLF_00004 5692 4 Skin 0.40 protein_coding missense_variant MODERATE 41A>T His14Leu
M0080195 HDBPCNLF_00004 5801 7 Skin 0.70 protein_coding synonymous_variant LOW 150T>C Thr50Thr
M0080196 HDBPCNLF_00004 5987 4 Skin 0.40 protein_coding synonymous_variant LOW 336T>C Ala112Ala
M0080197 HDBPCNLF_00004 6005 4 Skin 0.40 protein_coding synonymous_variant LOW 354T>C Ile118Ile
M0080198 HDBPCNLF_00004 6016 4 Skin 0.40 protein_coding missense_variant MODERATE 365A>G His122Arg
M0080199 HDBPCNLF_00004 6018 7 Skin 0.70 protein_coding missense_variant MODERATE 367T>C Ser123Pro
M0080200 HDBPCNLF_00004 6029 4 Skin 0.40 protein_coding synonymous_variant LOW 378T>C Ala126Ala
M0080201 HDBPCNLF_00004 6044 4 Skin 0.40 protein_coding synonymous_variant LOW 393T>C Arg131Arg
M0080202 HDBPCNLF_00004 6062 4 Skin 0.40 protein_coding synonymous_variant LOW 411A>G Lys137Lys
M0080203 HDBPCNLF_00004 6094 4 Skin 0.40 protein_coding missense_variant MODERATE 443G>A Gly148Glu
M0080204 HDBPCNLF_00004 6134 3 Skin 0.30 protein_coding synonymous_variant LOW 483C>T Gly161Gly
M0080205 HDBPCNLF_00004 6161 4 Skin 0.40 protein_coding synonymous_variant LOW 510G>A Glu170Glu
M0080206 HDBPCNLF_00004 6185 4 Skin 0.40 protein_coding synonymous_variant LOW 534G>C Gly178Gly
M0080207 HDBPCNLF_00004 6231 4 Skin 0.40 protein_coding missense_variant MODERATE 580G>T Ala194Ser
M0080208 HDBPCNLF_00004 6236 5 Skin 0.50 protein_coding missense_variant MODERATE 585T>A Asp195Glu
M0080209 HDBPCNLF_00001 109 3 Skin 0.30 protein_coding synonymous_variant LOW 57C>T Tyr19Tyr
M0080210 HDBPCNLF_00001 113 3 Skin 0.30 protein_coding missense_variant MODERATE 61C>T Pro21Ser
M0080211 HDBPCNLF_00001 121 3 Skin 0.30 protein_coding synonymous_variant LOW 69A>G Arg23Arg
M0080212 HDBPCNLF_00001 123 3 Skin 0.30 protein_coding missense_variant MODERATE 71A>T Lys24Ile
M0080213 HDBPCNLF_00001 145 3 Skin 0.30 protein_coding synonymous_variant LOW 93A>G Glu31Glu
M0080214 HDBPCNLF_00001 295 3 Skin 0.30 protein_coding synonymous_variant LOW 243C>T Ile81Ile
M0080215 HDBPCNLF_00001 415 3 Skin 0.30 protein_coding synonymous_variant LOW 363T>C Tyr121Tyr
M0080216 HDBPCNLF_00001 454 3 Skin 0.30 protein_coding synonymous_variant LOW 402A>G Lys134Lys
M0080217 HDBPCNLF_00001 478 3 Skin 0.30 protein_coding synonymous_variant LOW 426A>G Glu142Glu
M0080218 HDBPCNLF_00001 502 3 Skin 0.30 protein_coding synonymous_variant LOW 450A>G Ala150Ala
M0080219 HDBPCNLF_00001 589 3 Skin 0.30 protein_coding synonymous_variant LOW 537A>G Leu179Leu
M0080220 HDBPCNLF_00001 643 3 Skin 0.30 protein_coding synonymous_variant LOW 591C>T Leu197Leu
M0080221 HDBPCNLF_00001 652 3 Skin 0.30 protein_coding synonymous_variant LOW 600A>G Glu200Glu
M0080222 HDBPCNLF_00001 991 5 Skin 0.50 protein_coding synonymous_variant LOW 939A>T Val313Val
M0080223 HDBPCNLF_00001 992 3 Skin 0.30 protein_coding synonymous_variant LOW 940T>C Leu314Leu
M0080224 HDBPCNLF_00001 1009 3 Skin 0.30 protein_coding synonymous_variant LOW 957C>G Gly319Gly
M0080225 HDBPCNLF_00001 1029 3 Skin 0.30 protein_coding missense_variant MODERATE 977T>A Met326Lys
M0080226 HDBPCNLF_00001 1036 3 Skin 0.30 protein_coding synonymous_variant LOW 984G>A Gln328Gln
M0080227 HDBPCNLF_00001 1057 5 Skin 0.50 protein_coding synonymous_variant LOW 1005T>C Arg335Arg
M0080228 HDBPCNLF_00001 1099 3 Skin 0.30 protein_coding synonymous_variant LOW 1047T>C Thr349Thr
M0080229 HDBPCNLF_00001 1204 4 Skin 0.40 protein_coding synonymous_variant LOW 1152T>C Ala384Ala
M0080230 HDBPCNLF_00001 1285 3 Skin 0.30 protein_coding synonymous_variant LOW 1233A>C Ser411Ser
M0080231 HDBPCNLF_00001 1309 3 Skin 0.30 protein_coding synonymous_variant LOW 1257T>C Gly419Gly
M0080232 HDBPCNLF_00001 1312 3 Skin 0.30 protein_coding synonymous_variant LOW 1260A>G Arg420Arg
M0080233 HDBPCNLF_00001 1384 3 Skin 0.30 protein_coding synonymous_variant LOW 1332G>T Val444Val
M0080234 HDBPCNLF_00001 1431 3 Skin 0.30 protein_coding missense_variant MODERATE 1379A>G Lys460Arg
M0080235 HDBPCNLF_00001 1447 3 Skin 0.30 protein_coding synonymous_variant LOW 1395G>A Ala465Ala
M0080236 HDBPCNLF_00001 1450 3 Skin 0.30 protein_coding synonymous_variant LOW 1398C>A Gly466Gly
M0080237 HDBPCNLF_00001 1499 3 Skin 0.30 protein_coding synonymous_variant LOW 1447T>C Leu483Leu
M0080238 HDBPCNLF_00001 1516 3 Skin 0.30 protein_coding synonymous_variant LOW 1464C>T Gly488Gly
M0080239 HDBPCNLF_00001 1546 3 Skin 0.30 protein_coding synonymous_variant LOW 1494G>T Leu498Leu
M0080240 HDBPCNLF_00001 1555 3 Skin 0.30 protein_coding synonymous_variant LOW 1503G>A Leu501Leu
M0080241 HDBPCNLF_00001 1579 3 Skin 0.30 protein_coding synonymous_variant LOW 1527T>C Phe509Phe
M0080242 HDBPCNLF_00001 1592 3 Skin 0.30 protein_coding missense_variant MODERATE 1540A>G Asn514Asp
M0080243 HDBPCNLF_00001 1612 3 Skin 0.30 protein_coding synonymous_variant LOW 1560C>T Ala520Ala
M0080244 HDBPCNLF_00001 1615 5 Skin 0.50 protein_coding missense_variant MODERATE 1563G>T Leu521Phe
M0080245 HDBPCNLF_00002 1666 3 Skin 0.30 protein_coding missense_variant MODERATE 7G>A Ala3Thr
M0080246 HDBPCNLF_00002 1710 3 Skin 0.30 protein_coding synonymous_variant LOW 51T>A Leu17Leu
M0080247 HDBPCNLF_00002 1728 5 Skin 0.50 protein_coding synonymous_variant LOW 69G>A Gly23Gly
M0080248 HDBPCNLF_00002 1791 3 Skin 0.30 protein_coding synonymous_variant LOW 132A>G Ala44Ala
M0080249 HDBPCNLF_00002 1807 3 Skin 0.30 protein_coding synonymous_variant LOW 148T>C Leu50Leu
M0080250 HDBPCNLF_00002 1815 3 Skin 0.30 protein_coding synonymous_variant LOW 156T>C Ala52Ala
M0080251 HDBPCNLF_00002 1821 3 Skin 0.30 protein_coding synonymous_variant LOW 162T>C Ile54Ile
M0080252 HDBPCNLF_00002 1840 4 Skin 0.40 protein_coding synonymous_variant LOW 181T>C Leu61Leu
M0080253 HDBPCNLF_00002 1980 3 Skin 0.30 protein_coding synonymous_variant LOW 321A>C Thr107Thr
M0080254 HDBPCNLF_00002 1986 3 Skin 0.30 protein_coding synonymous_variant LOW 327C>T Ile109Ile
M0080255 HDBPCNLF_00002 1990 3 Skin 0.30 protein_coding synonymous_variant LOW 331T>C Leu111Leu
M0080256 HDBPCNLF_00002 2014 3 Skin 0.30 protein_coding synonymous_variant LOW 355C>T Leu119Leu
M0080257 HDBPCNLF_00002 2025 3 Skin 0.30 protein_coding synonymous_variant LOW 366T>C Pro122Pro
M0080258 HDBPCNLF_00002 2052 3 Skin 0.30 protein_coding synonymous_variant LOW 393A>G Glu131Glu
M0080259 HDBPCNLF_00002 2055 3 Skin 0.30 protein_coding synonymous_variant LOW 396C>T Asp132Asp
M0080260 HDBPCNLF_00002 2079 3 Skin 0.30 protein_coding synonymous_variant LOW 420C>A Val140Val
M0080261 HDBPCNLF_00002 2085 3 Skin 0.30 protein_coding synonymous_variant LOW 426G>A Ala142Ala
M0080262 HDBPCNLF_00002 2097 3 Skin 0.30 protein_coding synonymous_variant LOW 438A>C Arg146Arg
M0080263 HDBPCNLF_00002 2103 3 Skin 0.30 protein_coding synonymous_variant LOW 444G>A Glu148Glu
M0080264 HDBPCNLF_00002 2214 3 Skin 0.30 protein_coding synonymous_variant LOW 555C>G Arg185Arg
M0080265 HDBPCNLF_00002 2227 3 Skin 0.30 protein_coding missense_variant MODERATE 568T>G Ser190Ala
M0080266 HDBPCNLF_00002 2235 3 Skin 0.30 protein_coding synonymous_variant LOW 576A>G Thr192Thr
M0080267 HDBPCNLF_00002 2250 3 Skin 0.30 protein_coding synonymous_variant LOW 591G>A Arg197Arg
M0080268 HDBPCNLF_00002 2281 3 Skin 0.30 protein_coding missense_variant MODERATE 622A>C Asn208His
M0080269 HDBPCNLF_00002 2285 3 Skin 0.30 protein_coding missense_variant MODERATE 626G>A Gly209Asp
M0080270 HDBPCNLF_00002 2297 3 Skin 0.30 protein_coding missense_variant MODERATE 638A>C Asp213Ala
M0080271 HDBPCNLF_00003 2344 3 Skin 0.30 protein_coding synonymous_variant LOW 42C>T Ile14Ile
M0080272 HDBPCNLF_00003 2348 3 Skin 0.30 protein_coding synonymous_variant LOW 46T>C Leu16Leu
M0080273 HDBPCNLF_00003 2410 3 Skin 0.30 protein_coding synonymous_variant LOW 108A>G Leu36Leu
M0080274 HDBPCNLF_00003 2461 3 Skin 0.30 protein_coding synonymous_variant LOW 159G>A Ser53Ser
M0080275 HDBPCNLF_00003 2503 3 Skin 0.30 protein_coding synonymous_variant LOW 201A>G Ala67Ala
M0080276 HDBPCNLF_00003 2512 3 Skin 0.30 protein_coding synonymous_variant LOW 210G>A Gln70Gln
M0080277 HDBPCNLF_00003 2582 3 Skin 0.30 protein_coding missense_variant MODERATE 280A>G Thr94Ala
M0080278 HDBPCNLF_00003 2593 3 Skin 0.30 protein_coding synonymous_variant LOW 291T>C Gly97Gly
M0080279 HDBPCNLF_00003 2605 3 Skin 0.30 protein_coding synonymous_variant LOW 303C>G Pro101Pro
M0080280 HDBPCNLF_00003 2615 5 Skin 0.50 protein_coding synonymous_variant LOW 313A>C Arg105Arg
M0080281 HDBPCNLF_00003 2689 3 Skin 0.30 protein_coding synonymous_variant LOW 387T>C Ala129Ala
M0080282 HDBPCNLF_00003 2698 3 Skin 0.30 protein_coding synonymous_variant LOW 396C>T Arg132Arg
M0080283 HDBPCNLF_00003 2737 3 Skin 0.30 protein_coding synonymous_variant LOW 435A>G Lys145Lys
M0080284 HDBPCNLF_00003 2740 3 Skin 0.30 protein_coding synonymous_variant LOW 438C>G Leu146Leu
M0080285 HDBPCNLF_00003 2755 4 Skin 0.40 protein_coding synonymous_variant LOW 453A>G Gln151Gln
M0080286 HDBPCNLF_00003 2761 3 Skin 0.30 protein_coding synonymous_variant LOW 459T>C Asp153Asp
M0080287 HDBPCNLF_00003 2833 3 Skin 0.30 protein_coding synonymous_variant LOW 531G>A Lys177Lys
M0080288 HDBPCNLF_00003 2956 4 Skin 0.40 protein_coding synonymous_variant LOW 654A>G Leu218Leu
M0080289 HDBPCNLF_00003 3046 6 Skin 0.60 protein_coding synonymous_variant LOW 744T>C Asp248Asp
M0080290 HDBPCNLF_00003 3064 3 Skin 0.30 protein_coding synonymous_variant LOW 762G>A Leu254Leu
M0080291 HDBPCNLF_00003 3198 3 Skin 0.30 protein_coding missense_variant MODERATE 896G>A Arg299His
M0080292 HDBPCNLF_00003 3220 3 Skin 0.30 protein_coding synonymous_variant LOW 918C>T Asp306Asp
M0080293 HDBPCNLF_00003 3251 3 Skin 0.30 protein_coding missense_variant MODERATE 949G>A Ala317Thr
M0080294 HDBPCNLF_00003 3259 3 Skin 0.30 protein_coding synonymous_variant LOW 957T>A Ala319Ala
M0080295 HDBPCNLF_00003 3344 3 Skin 0.30 protein_coding missense_variant MODERATE 1042A>G Ser348Gly
M0080296 HDBPCNLF_00003 3352 3 Skin 0.30 protein_coding synonymous_variant LOW 1050C>T Gly350Gly
M0080297 HDBPCNLF_00003 3367 3 Skin 0.30 protein_coding synonymous_variant LOW 1065A>G Leu355Leu
M0080298 HDBPCNLF_00003 3478 3 Skin 0.30 protein_coding synonymous_variant LOW 1176T>C His392His
M0080299 HDBPCNLF_00003 3649 6 Skin 0.60 protein_coding synonymous_variant LOW 1347T>C Asn449Asn
M0080300 HDBPCNLF_00003 3658 3 Skin 0.30 protein_coding synonymous_variant LOW 1356A>G Arg452Arg
M0080301 HDBPCNLF_00003 3751 4 Skin 0.40 protein_coding synonymous_variant LOW 1449A>G Pro483Pro
M0080302 HDBPCNLF_00003 3754 3 Skin 0.30 protein_coding synonymous_variant LOW 1452A>G Gln484Gln
M0080303 HDBPCNLF_00003 3829 3 Skin 0.30 protein_coding synonymous_variant LOW 1527A>G Ala509Ala
M0080304 HDBPCNLF_00003 3910 4 Skin 0.40 protein_coding synonymous_variant LOW 1608C>G Pro536Pro
M0080305 HDBPCNLF_00003 3958 4 Skin 0.40 protein_coding missense_variant MODERATE 1656T>A Asp552Glu
M0080306 HDBPCNLF_00003 3979 3 Skin 0.30 protein_coding synonymous_variant LOW 1677A>G Ala559Ala
M0080307 HDBPCNLF_00003 4012 4 Skin 0.40 protein_coding synonymous_variant LOW 1710T>C Phe570Phe
M0080308 HDBPCNLF_00003 4100 4 Skin 0.40 protein_coding missense_variant MODERATE 1798A>C Lys600Gln
M0080309 HDBPCNLF_00003 4111 3 Skin 0.30 protein_coding synonymous_variant LOW 1809T>C Asp603Asp
M0080310 HDBPCNLF_00003 4160 3 Skin 0.30 protein_coding missense_variant MODERATE 1858A>C Ser620Arg
M0080311 HDBPCNLF_00003 4171 3 Skin 0.30 protein_coding synonymous_variant LOW 1869G>A Arg623Arg
M0080312 HDBPCNLF_00003 4228 4 Skin 0.40 protein_coding synonymous_variant LOW 1926A>G Ala642Ala
M0080313 HDBPCNLF_00003 4402 5 Skin 0.50 protein_coding synonymous_variant LOW 2100T>C Leu700Leu
M0080314 HDBPCNLF_00003 4441 5 Skin 0.50 protein_coding synonymous_variant LOW 2139T>C His713His
M0080315 HDBPCNLF_00003 4456 4 Skin 0.40 protein_coding missense_variant MODERATE 2154T>A Asp718Glu
M0080316 HDBPCNLF_00003 4459 3 Skin 0.30 protein_coding missense_variant MODERATE 2157G>T Arg719Ser
M0080317 HDBPCNLF_00003 4513 4 Skin 0.40 protein_coding synonymous_variant LOW 2211T>A Ile737Ile
M0080318 HDBPCNLF_00003 4522 4 Skin 0.40 protein_coding missense_variant MODERATE 2220T>G Asp740Glu
M0080319 HDBPCNLF_00003 4568 4 Skin 0.40 protein_coding missense_variant MODERATE 2266A>C Thr756Pro
M0080320 HDBPCNLF_00003 4583 5 Skin 0.50 protein_coding missense_variant MODERATE 2281G>A Ala761Thr
M0080321 HDBPCNLF_00003 4585 5 Skin 0.50 protein_coding synonymous_variant LOW 2283T>C Ala761Ala
M0080322 HDBPCNLF_00003 4606 4 Skin 0.40 protein_coding synonymous_variant LOW 2304G>A Glu768Glu
M0080323 HDBPCNLF_00003 4652 5 Skin 0.50 protein_coding missense_variant MODERATE 2350T>G Ser784Ala
M0080324 HDBPCNLF_00003 4679 3 Skin 0.30 protein_coding synonymous_variant LOW 2377C>T Leu793Leu
M0080325 HDBPCNLF_00003 4846 3 Skin 0.30 protein_coding synonymous_variant LOW 2544C>A Ala848Ala
M0080326 HDBPCNLF_00003 4867 3 Skin 0.30 protein_coding synonymous_variant LOW 2565T>C Arg855Arg
M0080327 HDBPCNLF_00003 4877 3 Skin 0.30 protein_coding synonymous_variant LOW 2575T>C Leu859Leu
M0080328 HDBPCNLF_00003 4879 3 Skin 0.30 protein_coding synonymous_variant LOW 2577G>A Leu859Leu
M0080329 HDBPCNLF_00003 4918 3 Skin 0.30 protein_coding synonymous_variant LOW 2616C>T His872His
M0080330 HDBPCNLF_00003 4942 3 Skin 0.30 protein_coding synonymous_variant LOW 2640T>C Ala880Ala
M0080331 HDBPCNLF_00003 4960 3 Skin 0.30 protein_coding synonymous_variant LOW 2658G>A Leu886Leu
M0080332 HDBPCNLF_00003 4999 3 Skin 0.30 protein_coding synonymous_variant LOW 2697C>T Pro899Pro
M0080333 HDBPCNLF_00003 5008 3 Skin 0.30 protein_coding synonymous_variant LOW 2706C>T Gly902Gly
M0080334 HDBPCNLF_00003 5014 3 Skin 0.30 protein_coding synonymous_variant LOW 2712T>C Arg904Arg
M0080335 HDBPCNLF_00003 5137 3 Skin 0.30 protein_coding synonymous_variant LOW 2835G>A Leu945Leu
M0080336 HDBPCNLF_00003 5158 3 Skin 0.30 protein_coding synonymous_variant LOW 2856T>C Asp952Asp
M0080337 HDBPCNLF_00003 5245 3 Skin 0.30 protein_coding synonymous_variant LOW 2943C>T Phe981Phe
M0080338 HDBPCNLF_00003 5359 3 Skin 0.30 protein_coding synonymous_variant LOW 3057G>A Leu1019Leu
M0080339 HDBPCNLF_00003 5369 3 Skin 0.30 protein_coding synonymous_variant LOW 3067C>T Leu1023Leu
M0080340 HDBPCNLF_00003 5467 4 Skin 0.40 protein_coding synonymous_variant LOW 3165T>G Ser1055Ser
M0080341 HDBPCNLF_00003 5593 7 Skin 0.70 protein_coding synonymous_variant LOW 3291G>A Pro1097Pro
M0080342 HDBPCNLF_00004 5694 4 Skin 0.40 protein_coding synonymous_variant LOW 43T>C Leu15Leu
M0080343 HDBPCNLF_00004 5709 3 Skin 0.30 protein_coding missense_variant MODERATE 58G>A Ala20Thr
M0080344 HDBPCNLF_00004 5726 3 Skin 0.30 protein_coding synonymous_variant LOW 75G>A Ser25Ser
M0080345 HDBPCNLF_00004 5741 3 Skin 0.30 protein_coding synonymous_variant LOW 90T>C Arg30Arg
M0080346 HDBPCNLF_00004 5903 3 Skin 0.30 protein_coding synonymous_variant LOW 252T>A Pro84Pro
M0080347 HDBPCNLF_00004 5924 3 Skin 0.30 protein_coding synonymous_variant LOW 273A>C Gly91Gly
M0080348 HDBPCNLF_00004 5925 3 Skin 0.30 protein_coding missense_variant MODERATE 274C>G Pro92Ala
M0080349 HDBPCNLF_00004 5927 3 Skin 0.30 protein_coding synonymous_variant LOW 276T>A Pro92Pro
M0080350 HDBPCNLF_00004 6030 3 Skin 0.30 protein_coding missense_variant MODERATE 379C>T His127Tyr
M0080351 HDBPCNLF_00004 6131 3 Skin 0.30 protein_coding synonymous_variant LOW 480G>C Ser160Ser
M0080352 HDBPCNLF_00004 6163 3 Skin 0.30 protein_coding missense_variant MODERATE 512G>A Gly171Asp
M0080353 HDBPCNLF_00004 6272 6 Skin 0.60 protein_coding missense_variant MODERATE 621T>G Phe207Leu
M0080354 HDBPCNLF_00004 6335 6 Skin 0.60 protein_coding synonymous_variant LOW 684T>C Ser228Ser
M0080355 HDBPCNLF_00004 6342 5 Skin 0.50 protein_coding missense_variant MODERATE 691T>C Ser231Pro
M0080356 HDBPCNLF_00001 940 3 Skin 0.30 protein_coding synonymous_variant LOW 888C>T Leu296Leu
M0080357 HDBPCNLF_00003 3286 3 Skin 0.30 protein_coding synonymous_variant LOW 984C>T Asp328Asp
M0080358 HDBPCNLF_00004 6093 3 Skin 0.30 protein_coding missense_variant MODERATE 442G>A Gly148Arg
M0080359 HDBPCNLF_00004 6458 3 Skin 0.30 protein_coding synonymous_variant LOW 807A>G Ala269Ala
M0080360 HDBPCNLF_00003 5614 3 Skin 0.30 protein_coding synonymous_variant LOW 3312A>G Ser1104Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term