Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3217
  Reference Plasmid   MET0453_bin.2__k81_58541
  Reference Plasmid Size   7320
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0080363 BKJNOINC_00001 3073 4 Skin 0.80 protein_coding synonymous_variant LOW 1596C>T His532His
M0080364 BKJNOINC_00001 3082 4 Skin 0.80 protein_coding synonymous_variant LOW 1587G>A Glu529Glu
M0080365 BKJNOINC_00001 3181 3 Skin 0.60 protein_coding synonymous_variant LOW 1488C>T His496His
M0080366 BKJNOINC_00001 3325 3 Skin 0.60 protein_coding synonymous_variant LOW 1344C>T Tyr448Tyr
M0080367 BKJNOINC_00001 3358 3 Skin 0.60 protein_coding synonymous_variant LOW 1311T>C Asn437Asn
M0080368 BKJNOINC_00001 3375 3 Skin 0.60 protein_coding missense_variant MODERATE 1294G>A Asp432Asn
M0080369 BKJNOINC_00001 3388 3 Skin 0.60 protein_coding missense_variant MODERATE 1281A>T Lys427Asn
M0080370 BKJNOINC_00001 3557 3 Skin 0.60 protein_coding missense_variant MODERATE 1112A>C Asn371Thr
M0080371 BKJNOINC_00001 3568 3 Skin 0.60 protein_coding synonymous_variant LOW 1101T>A Ala367Ala
M0080372 BKJNOINC_00001 3570 3 Skin 0.60 protein_coding missense_variant MODERATE 1099G>T Ala367Ser
M0080373 BKJNOINC_00001 3583 3 Skin 0.60 protein_coding synonymous_variant LOW 1086T>A Thr362Thr
M0080374 BKJNOINC_00001 3683 3 Skin 0.60 protein_coding missense_variant MODERATE 986A>T Asn329Ile
M0080375 BKJNOINC_00001 3786 3 Skin 0.60 protein_coding missense_variant MODERATE 883T>G Tyr295Asp
M0080376 BKJNOINC_00001 4063 3 Skin 0.60 protein_coding synonymous_variant LOW 606T>A Ser202Ser
M0080377 BKJNOINC_00004 6499 4 Skin 0.80 protein_coding synonymous_variant LOW 567C>T Ser189Ser
M0080378 BKJNOINC_00004 6565 3 Skin 0.60 protein_coding synonymous_variant LOW 501T>C Leu167Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BKJNOINC_00001 BAW91248.1|GH73 100 0 1 1464 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term