Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3228
  Reference Plasmid   MET0490_bin.4__k81_21756
  Reference Plasmid Size   19118
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0080458 CCNDODCP_00005 5266 3 Skin 0.60 protein_coding synonymous_variant LOW 1245T>G Thr415Thr
M0080459 CCNDODCP_00005 5302 3 Skin 0.60 protein_coding synonymous_variant LOW 1209T>C Asp403Asp
M0080460 CCNDODCP_00005 5311 3 Skin 0.60 protein_coding synonymous_variant LOW 1200C>T Val400Val
M0080461 CCNDODCP_00005 5335 3 Skin 0.60 protein_coding synonymous_variant LOW 1176C>A Val392Val
M0080462 CCNDODCP_00005 5377 3 Skin 0.60 protein_coding synonymous_variant LOW 1134A>C Arg378Arg
M0080463 CCNDODCP_00005 5407 3 Skin 0.60 protein_coding synonymous_variant LOW 1104T>A Leu368Leu
M0080464 CCNDODCP_00005 5434 3 Skin 0.60 protein_coding synonymous_variant LOW 1077G>A Thr359Thr
M0080465 CCNDODCP_00005 5470 3 Skin 0.60 protein_coding synonymous_variant LOW 1041T>A Thr347Thr
M0080466 CCNDODCP_00005 5511 3 Skin 0.60 protein_coding synonymous_variant LOW 1000C>T Leu334Leu
M0080467 CCNDODCP_00005 5521 3 Skin 0.60 protein_coding synonymous_variant LOW 990A>T Thr330Thr
M0080468 CCNDODCP_00005 5524 3 Skin 0.60 protein_coding synonymous_variant LOW 987G>A Lys329Lys
M0080469 CCNDODCP_00005 5539 3 Skin 0.60 protein_coding synonymous_variant LOW 972A>G Ser324Ser
M0080470 CCNDODCP_00005 5545 3 Skin 0.60 protein_coding synonymous_variant LOW 966C>T Gly322Gly
M0080471 CCNDODCP_00005 5560 3 Skin 0.60 protein_coding synonymous_variant LOW 951T>C Phe317Phe
M0080472 CCNDODCP_00005 5638 3 Skin 0.60 protein_coding synonymous_variant LOW 873G>A Lys291Lys
M0080473 CCNDODCP_00005 5653 3 Skin 0.60 protein_coding synonymous_variant LOW 858A>G Ala286Ala
M0080474 CCNDODCP_00005 5822 4 Skin 0.80 protein_coding missense_variant MODERATE 689G>A Ser230Asn
M0080475 CCNDODCP_00005 5863 3 Skin 0.60 protein_coding synonymous_variant LOW 648T>C Arg216Arg
M0080476 CCNDODCP_00005 5905 3 Skin 0.60 protein_coding synonymous_variant LOW 606C>T Asp202Asp
M0080477 CCNDODCP_00005 5977 3 Skin 0.60 protein_coding synonymous_variant LOW 534T>A Thr178Thr
M0080478 CCNDODCP_00005 6091 3 Skin 0.60 protein_coding synonymous_variant LOW 420A>G Pro140Pro
M0080479 CCNDODCP_00005 6106 3 Skin 0.60 protein_coding synonymous_variant LOW 405T>A Thr135Thr
M0080480 CCNDODCP_00005 6127 3 Skin 0.60 protein_coding synonymous_variant LOW 384C>T Phe128Phe
M0080481 CCNDODCP_00005 6133 3 Skin 0.60 protein_coding synonymous_variant LOW 378C>T Ala126Ala
M0080482 CCNDODCP_00005 6134 4 Skin 0.80 protein_coding missense_variant MODERATE 377C>T Ala126Val
M0080483 CCNDODCP_00005 6136 3 Skin 0.60 protein_coding synonymous_variant LOW 375T>C Asn125Asn
M0080484 CCNDODCP_00005 6139 3 Skin 0.60 protein_coding synonymous_variant LOW 372C>T Arg124Arg
M0080485 CCNDODCP_00005 6343 3 Skin 0.60 protein_coding synonymous_variant LOW 168G>A Gly56Gly
M0080486 CCNDODCP_00005 6373 3 Skin 0.60 protein_coding synonymous_variant LOW 138G>A Glu46Glu
M0080487 CCNDODCP_00002 6647 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4762T>C None
M0080488 CCNDODCP_00002 6790 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4905C>T None
M0080489 CCNDODCP_00002 6793 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4908G>A None
M0080490 CCNDODCP_00002 6841 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4956T>C None
M0080491 CCNDODCP_00002 6868 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4983A>T None
M0080492 CCNDODCP_00006 6897 3 Skin 0.60 protein_coding synonymous_variant LOW 27T>C His9His
M0080493 CCNDODCP_00006 6947 3 Skin 0.60 protein_coding missense_variant MODERATE 77G>A Ser26Asn
M0080494 CCNDODCP_00006 6975 3 Skin 0.60 protein_coding synonymous_variant LOW 105A>G Val35Val
M0080495 CCNDODCP_00006 7004 3 Skin 0.60 protein_coding missense_variant MODERATE 134C>A Pro45Gln
M0080496 CCNDODCP_00006 7007 3 Skin 0.60 protein_coding missense_variant MODERATE 137G>A Arg46His
M0080497 CCNDODCP_00006 7011 3 Skin 0.60 protein_coding synonymous_variant LOW 141A>G Pro47Pro
M0080498 CCNDODCP_00006 7032 3 Skin 0.60 protein_coding synonymous_variant LOW 162C>T Asn54Asn
M0080499 CCNDODCP_00006 7039 3 Skin 0.60 protein_coding missense_variant MODERATE 169A>G Ile57Val
M0080500 CCNDODCP_00006 7059 3 Skin 0.60 protein_coding synonymous_variant LOW 189C>T Tyr63Tyr
M0080501 CCNDODCP_00006 7066 3 Skin 0.60 protein_coding missense_variant MODERATE 196A>C Ser66Arg
M0080502 CCNDODCP_00006 7094 3 Skin 0.60 protein_coding missense_variant MODERATE 224A>T Tyr75Phe
M0080503 CCNDODCP_00006 7135 3 Skin 0.60 protein_coding missense_variant MODERATE 265A>T Ile89Phe
M0080504 CCNDODCP_00006 7136 3 Skin 0.60 protein_coding missense_variant MODERATE 266T>A Ile89Asn
M0080505 CCNDODCP_00006 7140 3 Skin 0.60 protein_coding synonymous_variant LOW 270C>T Ile90Ile
M0080506 CCNDODCP_00006 7173 3 Skin 0.60 protein_coding synonymous_variant LOW 303T>C Asn101Asn
M0080507 CCNDODCP_00006 7197 3 Skin 0.60 protein_coding synonymous_variant LOW 327T>C Ile109Ile
M0080508 CCNDODCP_00006 7211 3 Skin 0.60 protein_coding missense_variant MODERATE 341A>G His114Arg
M0080509 CCNDODCP_00006 7257 3 Skin 0.60 protein_coding synonymous_variant LOW 387A>T Ile129Ile
M0080510 CCNDODCP_00006 7258 3 Skin 0.60 protein_coding missense_variant MODERATE 388A>T Ile130Leu
M0080511 CCNDODCP_00006 7314 3 Skin 0.60 protein_coding synonymous_variant LOW 444C>T Asn148Asn
M0080512 CCNDODCP_00006 7343 3 Skin 0.60 protein_coding missense_variant MODERATE 473G>A Arg158His
M0080513 CCNDODCP_00006 7423 3 Skin 0.60 protein_coding synonymous_variant LOW 553C>T Leu185Leu
M0080514 CCNDODCP_00006 7465 3 Skin 0.60 protein_coding missense_variant MODERATE 595T>C Ser199Pro
M0080515 CCNDODCP_00006 7470 3 Skin 0.60 protein_coding synonymous_variant LOW 600C>T Arg200Arg
M0080516 CCNDODCP_00006 7479 3 Skin 0.60 protein_coding synonymous_variant LOW 609G>A Val203Val
M0080517 CCNDODCP_00006 7598 3 Skin 0.60 protein_coding missense_variant MODERATE 728A>T His243Leu
M0080518 CCNDODCP_00006 7700 3 Skin 0.60 protein_coding missense_variant MODERATE 830C>T Ala277Val
M0080519 CCNDODCP_00006 7708 3 Skin 0.60 protein_coding missense_variant MODERATE 838T>C Phe280Leu
M0080520 CCNDODCP_00006 7729 3 Skin 0.60 protein_coding missense_variant MODERATE 859A>G Ile287Val
M0080521 CCNDODCP_00006 7731 3 Skin 0.60 protein_coding synonymous_variant LOW 861C>T Ile287Ile
M0080522 CCNDODCP_00006 7737 3 Skin 0.60 protein_coding synonymous_variant LOW 867A>G Pro289Pro
M0080523 CCNDODCP_00006 7743 3 Skin 0.60 protein_coding synonymous_variant LOW 873C>T Arg291Arg
M0080524 CCNDODCP_00006 7752 3 Skin 0.60 protein_coding synonymous_variant LOW 882G>A Gly294Gly
M0080525 CCNDODCP_00006 7755 3 Skin 0.60 protein_coding synonymous_variant LOW 885C>T Phe295Phe
M0080526 CCNDODCP_00006 7824 3 Skin 0.60 protein_coding synonymous_variant LOW 954G>T Pro318Pro
M0080527 CCNDODCP_00006 7825 3 Skin 0.60 protein_coding missense_variant MODERATE 955G>C Ala319Pro
M0080528 CCNDODCP_00006 7838 3 Skin 0.60 protein_coding missense_variant MODERATE 968A>C Asn323Thr
M0080529 CCNDODCP_00006 7840 3 Skin 0.60 protein_coding missense_variant MODERATE 970C>A His324Asn
M0080530 CCNDODCP_00006 7842 3 Skin 0.60 protein_coding synonymous_variant LOW 972C>T His324His
M0080531 CCNDODCP_00006 7843 3 Skin 0.60 protein_coding missense_variant MODERATE 973A>C Lys325Gln
M0080532 CCNDODCP_00006 7863 3 Skin 0.60 protein_coding synonymous_variant LOW 993A>G Leu331Leu
M0080533 CCNDODCP_00006 7866 3 Skin 0.60 protein_coding synonymous_variant LOW 996T>A Pro332Pro
M0080534 CCNDODCP_00006 7906 3 Skin 0.60 protein_coding missense_variant MODERATE 1036A>G Ile346Val
M0080535 CCNDODCP_00006 7930 3 Skin 0.60 protein_coding missense_variant MODERATE 1060A>G Lys354Glu
M0080536 CCNDODCP_00006 7935 3 Skin 0.60 protein_coding synonymous_variant LOW 1065A>C Ser355Ser
M0080537 CCNDODCP_00006 7959 3 Skin 0.60 protein_coding synonymous_variant LOW 1089C>A Thr363Thr
M0080538 CCNDODCP_00006 7970 3 Skin 0.60 protein_coding missense_variant MODERATE 1100T>A Phe367Tyr
M0080539 CCNDODCP_00006 7995 3 Skin 0.60 protein_coding synonymous_variant LOW 1125A>G Gln375Gln
M0080540 CCNDODCP_00006 8011 3 Skin 0.60 protein_coding missense_variant MODERATE 1141C>G Gln381Glu
M0080541 CCNDODCP_00005 8087 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1577G>A None
M0080542 CCNDODCP_00005 8220 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1710G>A None
M0080543 CCNDODCP_00007 8449 3 Skin 0.60 protein_coding missense_variant MODERATE 8T>A Ile3Lys
M0080544 CCNDODCP_00007 8613 3 Skin 0.60 protein_coding missense_variant MODERATE 172G>A Val58Ile
M0080545 CCNDODCP_00007 8627 3 Skin 0.60 protein_coding synonymous_variant LOW 186T>C Tyr62Tyr
M0080546 CCNDODCP_00007 8653 3 Skin 0.60 protein_coding missense_variant MODERATE 212C>T Thr71Ile
M0080547 CCNDODCP_00007 8657 3 Skin 0.60 protein_coding synonymous_variant LOW 216A>G Ala72Ala
M0080548 CCNDODCP_00007 8714 3 Skin 0.60 protein_coding synonymous_variant LOW 273C>T Phe91Phe
M0080549 CCNDODCP_00007 8759 3 Skin 0.60 protein_coding synonymous_variant LOW 318T>C Asp106Asp
M0080550 CCNDODCP_00007 8765 3 Skin 0.60 protein_coding missense_variant MODERATE 324T>A Phe108Leu
M0080551 CCNDODCP_00007 8903 3 Skin 0.60 protein_coding synonymous_variant LOW 462G>A Thr154Thr
M0080552 CCNDODCP_00007 8946 3 Skin 0.60 protein_coding missense_variant MODERATE 505A>T Ile169Leu
M0080553 CCNDODCP_00007 8979 3 Skin 0.60 protein_coding missense_variant MODERATE 538G>A Glu180Lys
M0080554 CCNDODCP_00007 8990 3 Skin 0.60 protein_coding synonymous_variant LOW 549C>T Arg183Arg
M0080555 CCNDODCP_00007 8999 3 Skin 0.60 protein_coding missense_variant MODERATE 558T>A His186Gln
M0080556 CCNDODCP_00007 9001 3 Skin 0.60 protein_coding missense_variant MODERATE 560T>A Leu187Gln
M0080557 CCNDODCP_00007 9029 3 Skin 0.60 protein_coding synonymous_variant LOW 588A>G Ala196Ala
M0080558 CCNDODCP_00007 9062 3 Skin 0.60 protein_coding synonymous_variant LOW 621T>C Arg207Arg
M0080559 CCNDODCP_00007 9065 3 Skin 0.60 protein_coding synonymous_variant LOW 624G>A Ala208Ala
M0080560 CCNDODCP_00007 9098 3 Skin 0.60 protein_coding synonymous_variant LOW 657T>C Tyr219Tyr
M0080561 CCNDODCP_00007 9170 3 Skin 0.60 protein_coding synonymous_variant LOW 729G>A Thr243Thr
M0080562 CCNDODCP_00007 9239 3 Skin 0.60 protein_coding synonymous_variant LOW 798T>A Val266Val
M0080563 CCNDODCP_00007 9263 3 Skin 0.60 protein_coding synonymous_variant LOW 822A>T Pro274Pro
M0080564 CCNDODCP_00007 9266 3 Skin 0.60 protein_coding synonymous_variant LOW 825G>A Glu275Glu
M0080565 CCNDODCP_00007 9281 3 Skin 0.60 protein_coding synonymous_variant LOW 840A>G Val280Val
M0080566 CCNDODCP_00007 9301 3 Skin 0.60 protein_coding missense_variant MODERATE 860A>G Lys287Arg
M0080567 CCNDODCP_00007 9323 3 Skin 0.60 protein_coding synonymous_variant LOW 882A>G Leu294Leu
M0080568 CCNDODCP_00007 9335 3 Skin 0.60 protein_coding synonymous_variant LOW 894T>C Asp298Asp
M0080569 CCNDODCP_00007 9341 3 Skin 0.60 protein_coding synonymous_variant LOW 900G>A Gln300Gln
M0080570 CCNDODCP_00007 9374 3 Skin 0.60 protein_coding synonymous_variant LOW 933T>C Gly311Gly
M0080571 CCNDODCP_00007 9434 3 Skin 0.60 protein_coding missense_variant MODERATE 993C>A Asp331Glu
M0080572 CCNDODCP_00007 9441 3 Skin 0.60 protein_coding missense_variant MODERATE 1000A>G Ile334Val
M0080573 CCNDODCP_00007 9482 3 Skin 0.60 protein_coding synonymous_variant LOW 1041T>C Cys347Cys
M0080574 CCNDODCP_00007 9566 3 Skin 0.60 protein_coding synonymous_variant LOW 1125A>G Val375Val
M0080575 CCNDODCP_00007 9626 3 Skin 0.60 protein_coding synonymous_variant LOW 1185C>T Leu395Leu
M0080576 CCNDODCP_00007 9647 3 Skin 0.60 protein_coding synonymous_variant LOW 1206T>C Pro402Pro
M0080577 CCNDODCP_00007 9665 3 Skin 0.60 protein_coding synonymous_variant LOW 1224A>T Pro408Pro
M0080578 CCNDODCP_00007 9680 3 Skin 0.60 protein_coding synonymous_variant LOW 1239C>T Gly413Gly
M0080579 CCNDODCP_00007 9713 3 Skin 0.60 protein_coding synonymous_variant LOW 1272T>C Asp424Asp
M0080580 CCNDODCP_00007 9716 3 Skin 0.60 protein_coding synonymous_variant LOW 1275C>T Gly425Gly
M0080581 CCNDODCP_00007 9720 3 Skin 0.60 protein_coding missense_variant MODERATE 1279G>A Val427Ile
M0080582 CCNDODCP_00007 9746 3 Skin 0.60 protein_coding synonymous_variant LOW 1305C>T Arg435Arg
M0080583 CCNDODCP_00007 9766 3 Skin 0.60 protein_coding missense_variant MODERATE 1325G>A Gly442Asp
M0080584 CCNDODCP_00007 9902 3 Skin 0.60 protein_coding synonymous_variant LOW 1461C>T Cys487Cys
M0080585 CCNDODCP_00007 9935 3 Skin 0.60 protein_coding synonymous_variant LOW 1494A>G Lys498Lys
M0080586 CCNDODCP_00007 9941 3 Skin 0.60 protein_coding missense_variant MODERATE 1500G>C Arg500Ser
M0080587 CCNDODCP_00007 9971 3 Skin 0.60 protein_coding synonymous_variant LOW 1530T>A Leu510Leu
M0080588 CCNDODCP_00007 10034 3 Skin 0.60 protein_coding synonymous_variant LOW 1593C>T Thr531Thr
M0080589 CCNDODCP_00007 10073 3 Skin 0.60 protein_coding synonymous_variant LOW 1632G>A Pro544Pro
M0080590 CCNDODCP_00007 10077 3 Skin 0.60 protein_coding missense_variant MODERATE 1636C>T His546Tyr
M0080591 CCNDODCP_00007 10100 3 Skin 0.60 protein_coding synonymous_variant LOW 1659A>T Ile553Ile
M0080592 CCNDODCP_00005 10132 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3622T>C None
M0080593 CCNDODCP_00005 10138 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3628G>T None
M0080594 CCNDODCP_00005 10140 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3630T>C None
M0080595 CCNDODCP_00005 10160 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3650A>C None
M0080596 CCNDODCP_00005 10161 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3651T>C None
M0080597 CCNDODCP_00005 10175 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3665G>A None
M0080598 CCNDODCP_00005 10190 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3680G>A None
M0080599 CCNDODCP_00008 10206 3 Skin 0.60 protein_coding missense_variant MODERATE 516T>G Asp172Glu
M0080600 CCNDODCP_00008 10211 3 Skin 0.60 protein_coding synonymous_variant LOW 511T>C Leu171Leu
M0080601 CCNDODCP_00008 10241 3 Skin 0.60 protein_coding missense_variant MODERATE 481G>C Val161Leu
M0080602 CCNDODCP_00008 10302 3 Skin 0.60 protein_coding synonymous_variant LOW 420G>A Gln140Gln
M0080603 CCNDODCP_00008 10308 3 Skin 0.60 protein_coding synonymous_variant LOW 414T>C Ala138Ala
M0080604 CCNDODCP_00008 10329 3 Skin 0.60 protein_coding synonymous_variant LOW 393A>T Val131Val
M0080605 CCNDODCP_00008 10341 3 Skin 0.60 protein_coding synonymous_variant LOW 381C>T Ile127Ile
M0080606 CCNDODCP_00008 10359 3 Skin 0.60 protein_coding synonymous_variant LOW 363A>G Glu121Glu
M0080607 CCNDODCP_00008 10368 3 Skin 0.60 protein_coding synonymous_variant LOW 354G>A Lys118Lys
M0080608 CCNDODCP_00008 10373 3 Skin 0.60 protein_coding missense_variant MODERATE 349A>G Lys117Glu
M0080609 CCNDODCP_00008 10416 3 Skin 0.60 protein_coding synonymous_variant LOW 306G>A Ala102Ala
M0080610 CCNDODCP_00008 10545 3 Skin 0.60 protein_coding synonymous_variant LOW 177G>A Ser59Ser
M0080611 CCNDODCP_00008 10562 3 Skin 0.60 protein_coding synonymous_variant LOW 160T>C Leu54Leu
M0080612 CCNDODCP_00008 10567 3 Skin 0.60 protein_coding missense_variant MODERATE 155C>A Ala52Glu
M0080613 CCNDODCP_00008 10578 3 Skin 0.60 protein_coding missense_variant MODERATE 144T>G Asp48Glu
M0080614 CCNDODCP_00008 10629 3 Skin 0.60 protein_coding synonymous_variant LOW 93C>T Tyr31Tyr
M0080615 CCNDODCP_00008 10632 3 Skin 0.60 protein_coding synonymous_variant LOW 90A>G Ala30Ala
M0080616 CCNDODCP_00005 10862 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4352A>C None
M0080617 CCNDODCP_00005 10867 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4357T>A None
M0080618 CCNDODCP_00005 10903 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4393A>G None
M0080619 CCNDODCP_00009 10914 3 Skin 0.60 protein_coding missense_variant MODERATE 7A>C Asn3His
M0080620 CCNDODCP_00009 10938 4 Skin 0.80 protein_coding missense_variant MODERATE 31A>G Arg11Gly
M0080621 CCNDODCP_00009 10948 3 Skin 0.60 protein_coding missense_variant MODERATE 41A>G Asn14Ser
M0080622 CCNDODCP_00009 11003 3 Skin 0.60 protein_coding synonymous_variant LOW 96G>T Pro32Pro
M0080623 CCNDODCP_00005 11154 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4644C>T None
M0080624 CCNDODCP_00010 11247 3 Skin 0.60 protein_coding synonymous_variant LOW 81G>A Leu27Leu
M0080625 CCNDODCP_00010 11289 3 Skin 0.60 protein_coding synonymous_variant LOW 123G>A Leu41Leu
M0080626 CCNDODCP_00010 11295 3 Skin 0.60 protein_coding synonymous_variant LOW 129C>T Thr43Thr
M0080627 CCNDODCP_00010 11350 3 Skin 0.60 protein_coding missense_variant MODERATE 184T>A Leu62Ile
M0080628 CCNDODCP_00010 11367 3 Skin 0.60 protein_coding synonymous_variant LOW 201C>G Pro67Pro
M0080629 CCNDODCP_00010 11378 3 Skin 0.60 protein_coding missense_variant MODERATE 212A>T Tyr71Phe
M0080630 CCNDODCP_00010 11403 3 Skin 0.60 protein_coding synonymous_variant LOW 237C>G Pro79Pro
M0080631 CCNDODCP_00010 11432 3 Skin 0.60 protein_coding missense_variant MODERATE 266T>C Val89Ala
M0080632 CCNDODCP_00010 11466 3 Skin 0.60 protein_coding synonymous_variant LOW 300C>T Phe100Phe
M0080633 CCNDODCP_00010 11526 3 Skin 0.60 protein_coding synonymous_variant LOW 360C>T Tyr120Tyr
M0080634 CCNDODCP_00010 11535 3 Skin 0.60 protein_coding synonymous_variant LOW 369T>C Ala123Ala
M0080635 CCNDODCP_00010 11536 3 Skin 0.60 protein_coding missense_variant MODERATE 370G>A Val124Ile
M0080636 CCNDODCP_00010 11537 3 Skin 0.60 protein_coding missense_variant MODERATE 371T>C Val124Ala
M0080637 CCNDODCP_00010 11547 3 Skin 0.60 protein_coding synonymous_variant LOW 381C>T His127His
M0080638 CCNDODCP_00010 11583 3 Skin 0.60 protein_coding synonymous_variant LOW 417C>T Ala139Ala
M0080639 CCNDODCP_00010 11594 3 Skin 0.60 protein_coding missense_variant MODERATE 428G>A Arg143Lys
M0080640 CCNDODCP_00010 11646 3 Skin 0.60 protein_coding synonymous_variant LOW 480G>A Gly160Gly
M0080641 CCNDODCP_00010 11661 3 Skin 0.60 protein_coding synonymous_variant LOW 495A>G Gln165Gln
M0080642 CCNDODCP_00010 11673 3 Skin 0.60 protein_coding synonymous_variant LOW 507C>T Ile169Ile
M0080643 CCNDODCP_00010 11685 3 Skin 0.60 protein_coding synonymous_variant LOW 519C>T Arg173Arg
M0080644 CCNDODCP_00010 11751 3 Skin 0.60 protein_coding synonymous_variant LOW 585T>C Leu195Leu
M0080645 CCNDODCP_00010 11766 3 Skin 0.60 protein_coding synonymous_variant LOW 600T>C Ile200Ile
M0080646 CCNDODCP_00010 11806 3 Skin 0.60 protein_coding missense_variant MODERATE 640G>T Val214Leu
M0080647 CCNDODCP_00011 11899 3 Skin 0.60 protein_coding synonymous_variant LOW 1641A>G Gln547Gln
M0080648 CCNDODCP_00011 11908 3 Skin 0.60 protein_coding synonymous_variant LOW 1632A>G Arg544Arg
M0080649 CCNDODCP_00011 11909 3 Skin 0.60 protein_coding missense_variant MODERATE 1631G>A Arg544Lys
M0080650 CCNDODCP_00011 11911 3 Skin 0.60 protein_coding missense_variant MODERATE 1629A>T Lys543Asn
M0080651 CCNDODCP_00011 11921 3 Skin 0.60 protein_coding missense_variant MODERATE 1619C>T Thr540Met
M0080652 CCNDODCP_00011 11938 3 Skin 0.60 protein_coding synonymous_variant LOW 1602A>T Ala534Ala
M0080653 CCNDODCP_00011 11944 3 Skin 0.60 protein_coding synonymous_variant LOW 1596T>C Leu532Leu
M0080654 CCNDODCP_00011 11950 3 Skin 0.60 protein_coding synonymous_variant LOW 1590C>G Val530Val
M0080655 CCNDODCP_00011 11974 3 Skin 0.60 protein_coding synonymous_variant LOW 1566C>T Ile522Ile
M0080656 CCNDODCP_00011 12004 3 Skin 0.60 protein_coding synonymous_variant LOW 1536A>G Thr512Thr
M0080657 CCNDODCP_00011 12010 3 Skin 0.60 protein_coding synonymous_variant LOW 1530G>A Val510Val
M0080658 CCNDODCP_00011 12037 3 Skin 0.60 protein_coding missense_variant MODERATE 1503T>G Ile501Met
M0080659 CCNDODCP_00011 12043 3 Skin 0.60 protein_coding synonymous_variant LOW 1497T>C Leu499Leu
M0080660 CCNDODCP_00011 12061 3 Skin 0.60 protein_coding missense_variant MODERATE 1479G>T Met493Ile
M0080661 CCNDODCP_00011 12063 3 Skin 0.60 protein_coding missense_variant MODERATE 1477A>G Met493Val
M0080662 CCNDODCP_00011 12106 3 Skin 0.60 protein_coding synonymous_variant LOW 1434C>G Thr478Thr
M0080663 CCNDODCP_00011 12127 3 Skin 0.60 protein_coding synonymous_variant LOW 1413T>C His471His
M0080664 CCNDODCP_00011 12178 3 Skin 0.60 protein_coding synonymous_variant LOW 1362C>T Leu454Leu
M0080665 CCNDODCP_00011 12186 3 Skin 0.60 protein_coding missense_variant MODERATE 1354A>G Ile452Val
M0080666 CCNDODCP_00011 12196 3 Skin 0.60 protein_coding synonymous_variant LOW 1344G>T Ala448Ala
M0080667 CCNDODCP_00011 12197 3 Skin 0.60 protein_coding missense_variant MODERATE 1343C>T Ala448Val
M0080668 CCNDODCP_00011 12206 3 Skin 0.60 protein_coding missense_variant MODERATE 1334T>C Leu445Ser
M0080669 CCNDODCP_00011 12211 3 Skin 0.60 protein_coding synonymous_variant LOW 1329T>C Phe443Phe
M0080670 CCNDODCP_00011 12221 3 Skin 0.60 protein_coding missense_variant MODERATE 1319T>C Val440Ala
M0080671 CCNDODCP_00011 12235 3 Skin 0.60 protein_coding synonymous_variant LOW 1305T>A Ile435Ile
M0080672 CCNDODCP_00011 12259 3 Skin 0.60 protein_coding synonymous_variant LOW 1281G>A Val427Val
M0080673 CCNDODCP_00011 12307 3 Skin 0.60 protein_coding synonymous_variant LOW 1233A>G Leu411Leu
M0080674 CCNDODCP_00011 12385 3 Skin 0.60 protein_coding synonymous_variant LOW 1155C>T Arg385Arg
M0080675 CCNDODCP_00011 12399 3 Skin 0.60 protein_coding synonymous_variant LOW 1141C>T Leu381Leu
M0080676 CCNDODCP_00011 12430 3 Skin 0.60 protein_coding synonymous_variant LOW 1110T>C Ile370Ile
M0080677 CCNDODCP_00011 12493 3 Skin 0.60 protein_coding synonymous_variant LOW 1047G>C Leu349Leu
M0080678 CCNDODCP_00011 12507 3 Skin 0.60 protein_coding missense_variant MODERATE 1033G>A Gly345Ser
M0080679 CCNDODCP_00011 12550 3 Skin 0.60 protein_coding synonymous_variant LOW 990T>A Thr330Thr
M0080680 CCNDODCP_00011 12559 3 Skin 0.60 protein_coding synonymous_variant LOW 981C>A Arg327Arg
M0080681 CCNDODCP_00011 12565 3 Skin 0.60 protein_coding synonymous_variant LOW 975T>C Asp325Asp
M0080682 CCNDODCP_00011 12654 3 Skin 0.60 protein_coding missense_variant MODERATE 886C>T Leu296Phe
M0080683 CCNDODCP_00011 12655 3 Skin 0.60 protein_coding synonymous_variant LOW 885C>G Ser295Ser
M0080684 CCNDODCP_00011 12667 3 Skin 0.60 protein_coding synonymous_variant LOW 873A>G Gln291Gln
M0080685 CCNDODCP_00011 12692 3 Skin 0.60 protein_coding missense_variant MODERATE 848A>G Asp283Gly
M0080686 CCNDODCP_00011 12702 3 Skin 0.60 protein_coding synonymous_variant LOW 838T>C Leu280Leu
M0080687 CCNDODCP_00011 12703 3 Skin 0.60 protein_coding synonymous_variant LOW 837G>A Glu279Glu
M0080688 CCNDODCP_00011 12712 3 Skin 0.60 protein_coding synonymous_variant LOW 828A>G Gly276Gly
M0080689 CCNDODCP_00011 12736 3 Skin 0.60 protein_coding synonymous_variant LOW 804G>A Lys268Lys
M0080690 CCNDODCP_00011 12745 3 Skin 0.60 protein_coding synonymous_variant LOW 795G>A Leu265Leu
M0080691 CCNDODCP_00011 12828 3 Skin 0.60 protein_coding missense_variant MODERATE 712C>T His238Tyr
M0080692 CCNDODCP_00011 12829 3 Skin 0.60 protein_coding synonymous_variant LOW 711A>G Pro237Pro
M0080693 CCNDODCP_00011 12847 3 Skin 0.60 protein_coding synonymous_variant LOW 693A>G Gln231Gln
M0080694 CCNDODCP_00011 12853 3 Skin 0.60 protein_coding synonymous_variant LOW 687C>T Leu229Leu
M0080695 CCNDODCP_00011 12889 3 Skin 0.60 protein_coding synonymous_variant LOW 651C>T Ile217Ile
M0080696 CCNDODCP_00011 12892 3 Skin 0.60 protein_coding synonymous_variant LOW 648A>G Ala216Ala
M0080697 CCNDODCP_00011 12895 3 Skin 0.60 protein_coding synonymous_variant LOW 645T>C Arg215Arg
M0080698 CCNDODCP_00011 12961 3 Skin 0.60 protein_coding synonymous_variant LOW 579C>T Thr193Thr
M0080699 CCNDODCP_00011 12970 3 Skin 0.60 protein_coding synonymous_variant LOW 570C>T Asp190Asp
M0080700 CCNDODCP_00011 12976 3 Skin 0.60 protein_coding synonymous_variant LOW 564T>C Ser188Ser
M0080701 CCNDODCP_00011 12985 3 Skin 0.60 protein_coding synonymous_variant LOW 555C>T Ser185Ser
M0080702 CCNDODCP_00011 12988 3 Skin 0.60 protein_coding synonymous_variant LOW 552A>G Ser184Ser
M0080703 CCNDODCP_00011 12999 3 Skin 0.60 protein_coding missense_variant MODERATE 541A>G Thr181Ala
M0080704 CCNDODCP_00011 13015 3 Skin 0.60 protein_coding synonymous_variant LOW 525T>A Val175Val
M0080705 CCNDODCP_00011 13018 3 Skin 0.60 protein_coding synonymous_variant LOW 522G>A Lys174Lys
M0080706 CCNDODCP_00011 13021 3 Skin 0.60 protein_coding synonymous_variant LOW 519A>G Ser173Ser
M0080707 CCNDODCP_00011 13144 3 Skin 0.60 protein_coding synonymous_variant LOW 396G>A Val132Val
M0080708 CCNDODCP_00011 13186 3 Skin 0.60 protein_coding missense_variant MODERATE 354G>T Lys118Asn
M0080709 CCNDODCP_00011 13198 3 Skin 0.60 protein_coding synonymous_variant LOW 342C>T Thr114Thr
M0080710 CCNDODCP_00011 13199 3 Skin 0.60 protein_coding missense_variant MODERATE 341C>T Thr114Ile
M0080711 CCNDODCP_00011 13213 3 Skin 0.60 protein_coding synonymous_variant LOW 327G>A Lys109Lys
M0080712 CCNDODCP_00011 13216 3 Skin 0.60 protein_coding synonymous_variant LOW 324A>T Gly108Gly
M0080713 CCNDODCP_00011 13225 3 Skin 0.60 protein_coding synonymous_variant LOW 315C>T Ala105Ala
M0080714 CCNDODCP_00011 13229 3 Skin 0.60 protein_coding missense_variant MODERATE 311A>C Asp104Ala
M0080715 CCNDODCP_00011 13324 3 Skin 0.60 protein_coding synonymous_variant LOW 216G>C Thr72Thr
M0080716 CCNDODCP_00011 13355 3 Skin 0.60 protein_coding missense_variant MODERATE 185A>G Asp62Gly
M0080717 CCNDODCP_00011 13413 3 Skin 0.60 protein_coding missense_variant MODERATE 127G>A Asp43Asn
M0080718 CCNDODCP_00011 13414 3 Skin 0.60 protein_coding synonymous_variant LOW 126C>T Ile42Ile
M0080719 CCNDODCP_00011 13434 3 Skin 0.60 protein_coding missense_variant MODERATE 106A>G Lys36Glu
M0080720 CCNDODCP_00011 13462 3 Skin 0.60 protein_coding synonymous_variant LOW 78G>A Thr26Thr
M0080721 CCNDODCP_00008 13563 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2842C>T None
M0080722 CCNDODCP_00012 13637 3 Skin 0.60 protein_coding synonymous_variant LOW 1179C>A Pro393Pro
M0080723 CCNDODCP_00012 13652 3 Skin 0.60 protein_coding synonymous_variant LOW 1164A>C Leu388Leu
M0080724 CCNDODCP_00012 13664 3 Skin 0.60 protein_coding synonymous_variant LOW 1152C>T Arg384Arg
M0080725 CCNDODCP_00012 13893 3 Skin 0.60 protein_coding missense_variant MODERATE 923A>G Asn308Ser
M0080726 CCNDODCP_00012 14015 3 Skin 0.60 protein_coding synonymous_variant LOW 801T>C Ile267Ile
M0080727 CCNDODCP_00012 14062 3 Skin 0.60 protein_coding missense_variant MODERATE 754A>G Thr252Ala
M0080728 CCNDODCP_00012 14108 3 Skin 0.60 protein_coding synonymous_variant LOW 708T>A Arg236Arg
M0080729 CCNDODCP_00012 14150 3 Skin 0.60 protein_coding synonymous_variant LOW 666A>G Pro222Pro
M0080730 CCNDODCP_00012 14165 3 Skin 0.60 protein_coding synonymous_variant LOW 651G>A Lys217Lys
M0080731 CCNDODCP_00012 14168 3 Skin 0.60 protein_coding synonymous_variant LOW 648A>T Gly216Gly
M0080732 CCNDODCP_00012 14171 3 Skin 0.60 protein_coding synonymous_variant LOW 645C>A Ser215Ser
M0080733 CCNDODCP_00012 14189 3 Skin 0.60 protein_coding synonymous_variant LOW 627T>A Ser209Ser
M0080734 CCNDODCP_00012 14195 3 Skin 0.60 protein_coding synonymous_variant LOW 621T>C Arg207Arg
M0080735 CCNDODCP_00012 14198 3 Skin 0.60 protein_coding synonymous_variant LOW 618G>A Val206Val
M0080736 CCNDODCP_00012 14294 3 Skin 0.60 protein_coding synonymous_variant LOW 522C>T Gly174Gly
M0080737 CCNDODCP_00012 14303 3 Skin 0.60 protein_coding synonymous_variant LOW 513C>G Ala171Ala
M0080738 CCNDODCP_00012 14365 3 Skin 0.60 protein_coding missense_variant MODERATE 451C>T His151Tyr
M0080739 CCNDODCP_00012 14366 3 Skin 0.60 protein_coding synonymous_variant LOW 450T>C Asp150Asp
M0080740 CCNDODCP_00012 14381 3 Skin 0.60 protein_coding synonymous_variant LOW 435T>G Ser145Ser
M0080741 CCNDODCP_00012 14423 3 Skin 0.60 protein_coding synonymous_variant LOW 393T>C Ser131Ser
M0080742 CCNDODCP_00012 14447 3 Skin 0.60 protein_coding synonymous_variant LOW 369T>A Gly123Gly
M0080743 CCNDODCP_00012 14624 3 Skin 0.60 protein_coding synonymous_variant LOW 192T>A Gly64Gly
M0080744 CCNDODCP_00012 14660 3 Skin 0.60 protein_coding synonymous_variant LOW 156C>T His52His
M0080745 CCNDODCP_00012 14669 3 Skin 0.60 protein_coding synonymous_variant LOW 147C>T Asp49Asp
M0080746 CCNDODCP_00012 14690 3 Skin 0.60 protein_coding synonymous_variant LOW 126A>G Ser42Ser
M0080747 CCNDODCP_00012 14705 3 Skin 0.60 protein_coding synonymous_variant LOW 111T>A Val37Val
M0080748 CCNDODCP_00012 14708 3 Skin 0.60 protein_coding synonymous_variant LOW 108A>G Gly36Gly
M0080749 CCNDODCP_00012 14711 3 Skin 0.60 protein_coding synonymous_variant LOW 105A>C Gly35Gly
M0080750 CCNDODCP_00012 14714 3 Skin 0.60 protein_coding synonymous_variant LOW 102T>A Val34Val
M0080751 CCNDODCP_00012 14733 3 Skin 0.60 protein_coding missense_variant MODERATE 83C>T Ala28Val
M0080752 CCNDODCP_00013 15247 3 Skin 0.60 protein_coding synonymous_variant LOW 417T>C Asp139Asp
M0080753 CCNDODCP_00013 15367 3 Skin 0.60 protein_coding synonymous_variant LOW 297T>C Gly99Gly
M0080754 CCNDODCP_00013 15382 3 Skin 0.60 protein_coding synonymous_variant LOW 282A>T Val94Val
M0080755 CCNDODCP_00013 15426 3 Skin 0.60 protein_coding synonymous_variant LOW 238C>T Leu80Leu
M0080756 CCNDODCP_00013 15439 3 Skin 0.60 protein_coding synonymous_variant LOW 225C>T Asp75Asp
M0080757 CCNDODCP_00013 15552 3 Skin 0.60 protein_coding missense_variant MODERATE 112T>G Ser38Ala
M0080758 CCNDODCP_00013 15556 3 Skin 0.60 protein_coding synonymous_variant LOW 108A>T Val36Val
M0080759 CCNDODCP_00013 15615 3 Skin 0.60 protein_coding missense_variant MODERATE 49T>G Ser17Ala
M0080760 CCNDODCP_00013 15618 3 Skin 0.60 protein_coding missense_variant MODERATE 46G>A Gly16Ser
M0080761 CCNDODCP_00008 15693 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4972T>C None
M0080762 CCNDODCP_00011 15784 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2245A>C None
M0080763 CCNDODCP_00011 15820 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2281C>T None
M0080764 CCNDODCP_00011 15835 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2296T>C None
M0080765 CCNDODCP_00011 15845 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2306T>G None
M0080766 CCNDODCP_00014 16026 3 Skin 0.60 protein_coding missense_variant MODERATE 112A>G Met38Val
M0080767 CCNDODCP_00014 16043 3 Skin 0.60 protein_coding synonymous_variant LOW 129C>T Ile43Ile
M0080768 CCNDODCP_00014 16076 3 Skin 0.60 protein_coding synonymous_variant LOW 162C>T Asp54Asp
M0080769 CCNDODCP_00014 16086 3 Skin 0.60 protein_coding missense_variant MODERATE 172G>T Val58Leu
M0080770 CCNDODCP_00014 16187 3 Skin 0.60 protein_coding synonymous_variant LOW 273A>T Gly91Gly
M0080771 CCNDODCP_00014 16190 3 Skin 0.60 protein_coding synonymous_variant LOW 276C>T Tyr92Tyr
M0080772 CCNDODCP_00014 16232 3 Skin 0.60 protein_coding synonymous_variant LOW 318A>C Ala106Ala
M0080773 CCNDODCP_00014 16337 3 Skin 0.60 protein_coding synonymous_variant LOW 423A>G Glu141Glu
M0080774 CCNDODCP_00014 16343 3 Skin 0.60 protein_coding synonymous_variant LOW 429A>G Glu143Glu
M0080775 CCNDODCP_00014 16366 3 Skin 0.60 protein_coding missense_variant MODERATE 452G>A Arg151His
M0080776 CCNDODCP_00014 16376 3 Skin 0.60 protein_coding synonymous_variant LOW 462G>C Val154Val
M0080777 CCNDODCP_00014 16412 3 Skin 0.60 protein_coding synonymous_variant LOW 498G>A Leu166Leu
M0080778 CCNDODCP_00014 16431 3 Skin 0.60 protein_coding missense_variant MODERATE 517A>G Thr173Ala
M0080779 CCNDODCP_00014 16448 3 Skin 0.60 protein_coding synonymous_variant LOW 534C>T Val178Val
M0080780 CCNDODCP_00014 16491 3 Skin 0.60 protein_coding missense_variant MODERATE 577T>G Ser193Ala
M0080781 CCNDODCP_00014 16520 3 Skin 0.60 protein_coding synonymous_variant LOW 606T>G Arg202Arg
M0080782 CCNDODCP_00014 16598 3 Skin 0.60 protein_coding synonymous_variant LOW 684T>G Leu228Leu
M0080783 CCNDODCP_00014 16634 3 Skin 0.60 protein_coding synonymous_variant LOW 720T>C Ser240Ser
M0080784 CCNDODCP_00014 16691 3 Skin 0.60 protein_coding synonymous_variant LOW 777T>C Phe259Phe
M0080785 CCNDODCP_00014 16750 3 Skin 0.60 protein_coding missense_variant MODERATE 836A>G His279Arg
M0080786 CCNDODCP_00014 16772 3 Skin 0.60 protein_coding synonymous_variant LOW 858C>T Leu286Leu
M0080787 CCNDODCP_00014 16775 3 Skin 0.60 protein_coding synonymous_variant LOW 861A>G Ala287Ala
M0080788 CCNDODCP_00014 16781 3 Skin 0.60 protein_coding synonymous_variant LOW 867T>C Asp289Asp
M0080789 CCNDODCP_00014 16832 3 Skin 0.60 protein_coding missense_variant MODERATE 918C>A Asp306Glu
M0080790 CCNDODCP_00011 17317 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3778T>C None
M0080791 CCNDODCP_00015 17444 3 Skin 0.60 protein_coding synonymous_variant LOW 45C>T Ala15Ala
M0080792 CCNDODCP_00015 17483 3 Skin 0.60 protein_coding synonymous_variant LOW 84T>C Ile28Ile
M0080793 CCNDODCP_00015 17498 3 Skin 0.60 protein_coding synonymous_variant LOW 99T>C Leu33Leu
M0080794 CCNDODCP_00015 17621 3 Skin 0.60 protein_coding synonymous_variant LOW 222C>A Arg74Arg
M0080795 CCNDODCP_00015 17849 3 Skin 0.60 protein_coding synonymous_variant LOW 450T>C Tyr150Tyr
M0080796 CCNDODCP_00015 17873 3 Skin 0.60 protein_coding synonymous_variant LOW 474A>T Pro158Pro
M0080797 CCNDODCP_00015 17939 3 Skin 0.60 protein_coding synonymous_variant LOW 540A>G Val180Val
M0080798 CCNDODCP_00015 18005 3 Skin 0.60 protein_coding synonymous_variant LOW 606A>G Val202Val
M0080799 CCNDODCP_00015 18035 3 Skin 0.60 protein_coding synonymous_variant LOW 636T>C Ile212Ile
M0080800 CCNDODCP_00015 18083 3 Skin 0.60 protein_coding synonymous_variant LOW 684C>T Ser228Ser
M0080801 CCNDODCP_00015 18092 3 Skin 0.60 protein_coding synonymous_variant LOW 693A>G Lys231Lys
M0080802 CCNDODCP_00015 18146 3 Skin 0.60 protein_coding synonymous_variant LOW 747G>A Ala249Ala
M0080803 CCNDODCP_00015 18257 3 Skin 0.60 protein_coding synonymous_variant LOW 858A>T Gly286Gly
M0080804 CCNDODCP_00015 18278 3 Skin 0.60 protein_coding synonymous_variant LOW 879G>A Thr293Thr
M0080805 CCNDODCP_00015 18338 3 Skin 0.60 protein_coding synonymous_variant LOW 939T>C Asn313Asn
M0080806 CCNDODCP_00015 18353 3 Skin 0.60 protein_coding synonymous_variant LOW 954A>G Ala318Ala
M0080807 CCNDODCP_00015 18710 3 Skin 0.60 protein_coding synonymous_variant LOW 1311C>T Ala437Ala
M0080808 CCNDODCP_00012 18774 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3959C>T None
M0080809 CCNDODCP_00012 18802 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3987A>G None
M0080810 CCNDODCP_00012 18804 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3989T>C None
M0080811 CCNDODCP_00012 18830 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4015G>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
CCNDODCP_00005 PHI:6190 Mqo 70.5 2.5e-211 1 492 0.9980 0.9980 rodents skin infection; food poisoning; respiratory disease malate-quinone oxidoreductases reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CCNDODCP_00006 QQC38033.1|GT4 92.4 1.5e-254 1 382 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term