Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3229
  Reference Plasmid   MET0490_bin.4__k81_25948
  Reference Plasmid Size   71834
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0080812 ABFKLGAC_00002 739 3 Skin 0.30 protein_coding missense_variant MODERATE 22A>G Arg8Gly
M0080813 ABFKLGAC_00006 1118 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1949G>A None
M0080814 ABFKLGAC_00004 1916 3 Skin 0.30 protein_coding stop_lost&splice_region_variant HIGH 330G>C Ter110Tyrext*?
M0080815 ABFKLGAC_00006 4585 3 Skin 0.30 protein_coding missense_variant MODERATE 1519T>G Tyr507Asp
M0080816 ABFKLGAC_00009 9370 3 Skin 0.30 protein_coding missense_variant MODERATE 35T>C Val12Ala
M0080817 ABFKLGAC_00009 9439 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -35C>T None
M0080818 ABFKLGAC_00011 11195 3 Skin 0.30 protein_coding missense_variant MODERATE 259T>A Ser87Thr
M0080819 ABFKLGAC_00011 11449 3 Skin 0.30 protein_coding synonymous_variant LOW 513A>G Ser171Ser
M0080820 ABFKLGAC_00012 12323 3 Skin 0.30 protein_coding missense_variant MODERATE 450A>C Glu150Asp
M0080821 ABFKLGAC_00013 13614 4 Skin 0.40 protein_coding synonymous_variant LOW 579A>G Leu193Leu
M0080822 ABFKLGAC_00013 13855 3 Skin 0.30 protein_coding missense_variant MODERATE 820G>T Asp274Tyr
M0080823 ABFKLGAC_00017 15633 3 Skin 0.30 protein_coding missense_variant MODERATE 76T>C Phe26Leu
M0080824 ABFKLGAC_00017 15957 4 Skin 0.40 protein_coding missense_variant MODERATE 400A>G Lys134Glu
M0080825 ABFKLGAC_00018 17136 3 Skin 0.30 protein_coding synonymous_variant LOW 831G>A Thr277Thr
M0080826 ABFKLGAC_00019 18080 4 Skin 0.40 protein_coding missense_variant MODERATE 404C>T Ser135Leu
M0080827 ABFKLGAC_00036 35259 3 Skin 0.30 protein_coding synonymous_variant LOW 627G>A Val209Val
M0080828 ABFKLGAC_00036 35316 3 Skin 0.30 protein_coding synonymous_variant LOW 570T>C His190His
M0080829 ABFKLGAC_00036 35382 3 Skin 0.30 protein_coding synonymous_variant LOW 504G>A Glu168Glu
M0080830 ABFKLGAC_00036 35412 3 Skin 0.30 protein_coding synonymous_variant LOW 474G>A Ala158Ala
M0080831 ABFKLGAC_00036 35439 3 Skin 0.30 protein_coding synonymous_variant LOW 447G>A Pro149Pro
M0080832 ABFKLGAC_00036 35538 3 Skin 0.30 protein_coding synonymous_variant LOW 348T>C Asp116Asp
M0080833 ABFKLGAC_00036 35541 3 Skin 0.30 protein_coding synonymous_variant LOW 345A>G Thr115Thr
M0080834 ABFKLGAC_00036 35568 3 Skin 0.30 protein_coding synonymous_variant LOW 318C>T Ile106Ile
M0080835 ABFKLGAC_00036 35748 3 Skin 0.30 protein_coding synonymous_variant LOW 138T>C Ile46Ile
M0080836 ABFKLGAC_00032 35982 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4667C>T None
M0080837 ABFKLGAC_00032 35995 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4680T>C None
M0080838 ABFKLGAC_00032 35999 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4684A>G None
M0080839 ABFKLGAC_00032 36059 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4744T>A None
M0080840 ABFKLGAC_00032 36069 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4754T>C None
M0080841 ABFKLGAC_00032 36116 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4801G>A None
M0080842 ABFKLGAC_00032 36152 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4837G>A None
M0080843 ABFKLGAC_00032 36194 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4879G>T None
M0080844 ABFKLGAC_00032 36197 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4882T>C None
M0080845 ABFKLGAC_00038 37996 3 Skin 0.30 protein_coding missense_variant MODERATE 508A>G Ser170Gly
M0080846 ABFKLGAC_00034 38602 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4971A>G None
M0080847 ABFKLGAC_00035 38717 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -4555A>C None
M0080848 ABFKLGAC_00043 42984 3 Skin 0.30 protein_coding missense_variant MODERATE 47T>C Ile16Thr
M0080849 ABFKLGAC_00044 43853 4 Skin 0.40 protein_coding missense_variant MODERATE 218C>A Thr73Asn
M0080850 ABFKLGAC_00047 46148 3 Skin 0.30 protein_coding synonymous_variant LOW 465C>A Gly155Gly
M0080851 ABFKLGAC_00046 49095 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4234T>C None
M0080852 ABFKLGAC_00046 49289 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -4428A>G None
M0080853 ABFKLGAC_00050 49958 4 Skin 0.40 protein_coding missense_variant MODERATE 440T>G Leu147Arg
M0080854 ABFKLGAC_00053 53949 5 Skin 0.50 protein_coding missense_variant MODERATE 762G>A Met254Ile
M0080855 ABFKLGAC_00056 54232 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -2726C>T None
M0080856 ABFKLGAC_00056 57350 5 Skin 0.50 protein_coding synonymous_variant LOW 393C>T Asn131Asn
M0080857 ABFKLGAC_00056 57638 3 Skin 0.30 protein_coding missense_variant MODERATE 681A>C Arg227Ser
M0080858 ABFKLGAC_00057 58138 3 Skin 0.30 protein_coding missense_variant MODERATE 1292T>C Ile431Thr
M0080859 ABFKLGAC_00058 60207 3 Skin 0.30 protein_coding missense_variant MODERATE 364G>A Val122Ile
M0080860 ABFKLGAC_00061 62280 5 Skin 0.50 protein_coding missense_variant MODERATE 23T>C Ile8Thr
M0080861 ABFKLGAC_00058 64689 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4119T>A None
M0080862 ABFKLGAC_00065 66320 5 Skin 0.50 protein_coding synonymous_variant LOW 390T>C Phe130Phe
M0080863 ABFKLGAC_00069 70406 3 Skin 0.30 protein_coding synonymous_variant LOW 1515T>C Asp505Asp
M0080864 ABFKLGAC_00070 70713 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -159A>G None
M0080865 ABFKLGAC_00028 26299 3 Skin 0.30 protein_coding missense_variant MODERATE 385T>G Phe129Val
M0080866 ABFKLGAC_00023 27495 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4360A>C None
M0080867 ABFKLGAC_00030 28600 3 Skin 0.30 protein_coding synonymous_variant LOW 216C>T Gly72Gly
M0080868 ABFKLGAC_00030 28645 3 Skin 0.30 protein_coding synonymous_variant LOW 171G>A Thr57Thr
M0080869 ABFKLGAC_00030 28672 3 Skin 0.30 protein_coding synonymous_variant LOW 144G>A Ala48Ala
M0080870 ABFKLGAC_00030 28693 3 Skin 0.30 protein_coding synonymous_variant LOW 123C>T Arg41Arg
M0080871 ABFKLGAC_00030 28711 3 Skin 0.30 protein_coding synonymous_variant LOW 105A>G Thr35Thr
M0080872 ABFKLGAC_00030 28780 3 Skin 0.30 protein_coding synonymous_variant LOW 36A>T Val12Val
M0080873 ABFKLGAC_00031 28873 3 Skin 0.30 protein_coding synonymous_variant LOW 1173T>C Arg391Arg
M0080874 ABFKLGAC_00031 28874 3 Skin 0.30 protein_coding missense_variant MODERATE 1172G>A Arg391His
M0080875 ABFKLGAC_00031 28885 3 Skin 0.30 protein_coding synonymous_variant LOW 1161A>G Leu387Leu
M0080876 ABFKLGAC_00031 28975 3 Skin 0.30 protein_coding synonymous_variant LOW 1071T>C Asp357Asp
M0080877 ABFKLGAC_00031 28977 3 Skin 0.30 protein_coding missense_variant MODERATE 1069G>C Asp357His
M0080878 ABFKLGAC_00031 28990 3 Skin 0.30 protein_coding synonymous_variant LOW 1056G>A Gly352Gly
M0080879 ABFKLGAC_00031 29016 3 Skin 0.30 protein_coding synonymous_variant LOW 1030C>T Leu344Leu
M0080880 ABFKLGAC_00031 29029 3 Skin 0.30 protein_coding synonymous_variant LOW 1017C>T Tyr339Tyr
M0080881 ABFKLGAC_00031 29044 3 Skin 0.30 protein_coding synonymous_variant LOW 1002C>T Ala334Ala
M0080882 ABFKLGAC_00031 29047 3 Skin 0.30 protein_coding synonymous_variant LOW 999T>C Gly333Gly
M0080883 ABFKLGAC_00031 29062 3 Skin 0.30 protein_coding synonymous_variant LOW 984C>T Gly328Gly
M0080884 ABFKLGAC_00031 29089 3 Skin 0.30 protein_coding synonymous_variant LOW 957T>C Val319Val
M0080885 ABFKLGAC_00031 29108 3 Skin 0.30 protein_coding missense_variant MODERATE 938G>A Arg313His
M0080886 ABFKLGAC_00031 29143 3 Skin 0.30 protein_coding synonymous_variant LOW 903A>G Val301Val
M0080887 ABFKLGAC_00031 29227 3 Skin 0.30 protein_coding synonymous_variant LOW 819G>A Thr273Thr
M0080888 ABFKLGAC_00031 29229 3 Skin 0.30 protein_coding missense_variant MODERATE 817A>G Thr273Ala
M0080889 ABFKLGAC_00031 29242 3 Skin 0.30 protein_coding synonymous_variant LOW 804A>C Arg268Arg
M0080890 ABFKLGAC_00031 29278 3 Skin 0.30 protein_coding synonymous_variant LOW 768T>G Val256Val
M0080891 ABFKLGAC_00031 29284 3 Skin 0.30 protein_coding synonymous_variant LOW 762C>G Val254Val
M0080892 ABFKLGAC_00031 29329 3 Skin 0.30 protein_coding synonymous_variant LOW 717T>A Gly239Gly
M0080893 ABFKLGAC_00031 29351 3 Skin 0.30 protein_coding missense_variant MODERATE 695A>G Lys232Arg
M0080894 ABFKLGAC_00031 29404 3 Skin 0.30 protein_coding synonymous_variant LOW 642C>T His214His
M0080895 ABFKLGAC_00031 29446 3 Skin 0.30 protein_coding synonymous_variant LOW 600A>G Ala200Ala
M0080896 ABFKLGAC_00031 29449 3 Skin 0.30 protein_coding synonymous_variant LOW 597C>T His199His
M0080897 ABFKLGAC_00031 29476 3 Skin 0.30 protein_coding synonymous_variant LOW 570G>A Val190Val
M0080898 ABFKLGAC_00031 29488 3 Skin 0.30 protein_coding synonymous_variant LOW 558C>T Cys186Cys
M0080899 ABFKLGAC_00031 29500 3 Skin 0.30 protein_coding synonymous_variant LOW 546A>G Val182Val
M0080900 ABFKLGAC_00031 29525 3 Skin 0.30 protein_coding missense_variant MODERATE 521A>C Lys174Thr
M0080901 ABFKLGAC_00031 29551 3 Skin 0.30 protein_coding synonymous_variant LOW 495C>T His165His
M0080902 ABFKLGAC_00031 29584 3 Skin 0.30 protein_coding synonymous_variant LOW 462C>T Thr154Thr
M0080903 ABFKLGAC_00031 29587 3 Skin 0.30 protein_coding synonymous_variant LOW 459A>G Leu153Leu
M0080904 ABFKLGAC_00031 29590 3 Skin 0.30 protein_coding synonymous_variant LOW 456A>G Val152Val
M0080905 ABFKLGAC_00031 29644 3 Skin 0.30 protein_coding synonymous_variant LOW 402T>C Phe134Phe
M0080906 ABFKLGAC_00031 29662 3 Skin 0.30 protein_coding synonymous_variant LOW 384C>T Gly128Gly
M0080907 ABFKLGAC_00031 29670 3 Skin 0.30 protein_coding synonymous_variant LOW 376T>C Leu126Leu
M0080908 ABFKLGAC_00031 29689 3 Skin 0.30 protein_coding synonymous_variant LOW 357A>G Leu119Leu
M0080909 ABFKLGAC_00031 29722 3 Skin 0.30 protein_coding synonymous_variant LOW 324T>C His108His
M0080910 ABFKLGAC_00031 29725 3 Skin 0.30 protein_coding synonymous_variant LOW 321T>G Gly107Gly
M0080911 ABFKLGAC_00031 29779 3 Skin 0.30 protein_coding synonymous_variant LOW 267T>C Asp89Asp
M0080912 ABFKLGAC_00031 29793 3 Skin 0.30 protein_coding missense_variant MODERATE 253A>G Thr85Ala
M0080913 ABFKLGAC_00031 29800 3 Skin 0.30 protein_coding synonymous_variant LOW 246C>T Leu82Leu
M0080914 ABFKLGAC_00031 29827 3 Skin 0.30 protein_coding synonymous_variant LOW 219C>T Ile73Ile
M0080915 ABFKLGAC_00032 30185 3 Skin 0.30 protein_coding synonymous_variant LOW 1131C>T Arg377Arg
M0080916 ABFKLGAC_00032 30188 3 Skin 0.30 protein_coding synonymous_variant LOW 1128G>A Glu376Glu
M0080917 ABFKLGAC_00032 30251 3 Skin 0.30 protein_coding synonymous_variant LOW 1065T>C Arg355Arg
M0080918 ABFKLGAC_00032 30296 3 Skin 0.30 protein_coding synonymous_variant LOW 1020A>G Leu340Leu
M0080919 ABFKLGAC_00032 30305 3 Skin 0.30 protein_coding synonymous_variant LOW 1011A>G Ala337Ala
M0080920 ABFKLGAC_00032 30326 3 Skin 0.30 protein_coding synonymous_variant LOW 990A>G Ala330Ala
M0080921 ABFKLGAC_00032 30329 3 Skin 0.30 protein_coding synonymous_variant LOW 987T>C Ser329Ser
M0080922 ABFKLGAC_00032 30335 3 Skin 0.30 protein_coding synonymous_variant LOW 981C>T Cys327Cys
M0080923 ABFKLGAC_00032 30338 3 Skin 0.30 protein_coding synonymous_variant LOW 978T>C Asp326Asp
M0080924 ABFKLGAC_00032 30341 3 Skin 0.30 protein_coding synonymous_variant LOW 975T>A Ser325Ser
M0080925 ABFKLGAC_00032 30344 3 Skin 0.30 protein_coding synonymous_variant LOW 972C>T Gly324Gly
M0080926 ABFKLGAC_00032 30368 3 Skin 0.30 protein_coding synonymous_variant LOW 948G>A Ala316Ala
M0080927 ABFKLGAC_00032 30374 3 Skin 0.30 protein_coding synonymous_variant LOW 942G>A Glu314Glu
M0080928 ABFKLGAC_00032 30395 3 Skin 0.30 protein_coding synonymous_variant LOW 921T>G Arg307Arg
M0080929 ABFKLGAC_00032 30410 3 Skin 0.30 protein_coding synonymous_variant LOW 906A>T Gly302Gly
M0080930 ABFKLGAC_00032 30414 3 Skin 0.30 protein_coding missense_variant MODERATE 902C>G Ala301Gly
M0080931 ABFKLGAC_00032 30425 3 Skin 0.30 protein_coding synonymous_variant LOW 891A>G Gln297Gln
M0080932 ABFKLGAC_00032 30449 3 Skin 0.30 protein_coding synonymous_variant LOW 867T>C Asn289Asn
M0080933 ABFKLGAC_00032 30506 3 Skin 0.30 protein_coding synonymous_variant LOW 810G>A Val270Val
M0080934 ABFKLGAC_00032 30527 3 Skin 0.30 protein_coding synonymous_variant LOW 789T>C Ser263Ser
M0080935 ABFKLGAC_00032 30539 3 Skin 0.30 protein_coding synonymous_variant LOW 777G>A Thr259Thr
M0080936 ABFKLGAC_00032 30542 3 Skin 0.30 protein_coding synonymous_variant LOW 774C>T Arg258Arg
M0080937 ABFKLGAC_00032 30559 3 Skin 0.30 protein_coding synonymous_variant LOW 757C>T Leu253Leu
M0080938 ABFKLGAC_00032 30638 3 Skin 0.30 protein_coding synonymous_variant LOW 678G>A Thr226Thr
M0080939 ABFKLGAC_00032 30674 3 Skin 0.30 protein_coding synonymous_variant LOW 642T>C Arg214Arg
M0080940 ABFKLGAC_00032 30722 3 Skin 0.30 protein_coding synonymous_variant LOW 594T>C Ala198Ala
M0080941 ABFKLGAC_00032 30731 3 Skin 0.30 protein_coding synonymous_variant LOW 585A>G Ala195Ala
M0080942 ABFKLGAC_00032 30740 3 Skin 0.30 protein_coding synonymous_variant LOW 576A>G Glu192Glu
M0080943 ABFKLGAC_00032 30785 3 Skin 0.30 protein_coding synonymous_variant LOW 531G>T Ser177Ser
M0080944 ABFKLGAC_00032 30800 3 Skin 0.30 protein_coding synonymous_variant LOW 516C>T Val172Val
M0080945 ABFKLGAC_00032 30968 3 Skin 0.30 protein_coding synonymous_variant LOW 348T>G Val116Val
M0080946 ABFKLGAC_00032 31001 3 Skin 0.30 protein_coding synonymous_variant LOW 315C>T Ile105Ile
M0080947 ABFKLGAC_00032 31088 3 Skin 0.30 protein_coding synonymous_variant LOW 228G>A Pro76Pro
M0080948 ABFKLGAC_00030 31326 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2511A>G None
M0080949 ABFKLGAC_00030 31336 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2521T>G None
M0080950 ABFKLGAC_00030 31462 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2647G>A None
M0080951 ABFKLGAC_00033 31562 3 Skin 0.30 protein_coding synonymous_variant LOW 81C>T Gly27Gly
M0080952 ABFKLGAC_00033 31566 3 Skin 0.30 protein_coding missense_variant MODERATE 85G>C Asp29His
M0080953 ABFKLGAC_00033 31568 3 Skin 0.30 protein_coding synonymous_variant LOW 87T>C Asp29Asp
M0080954 ABFKLGAC_00033 31574 3 Skin 0.30 protein_coding synonymous_variant LOW 93C>T Arg31Arg
M0080955 ABFKLGAC_00033 31646 3 Skin 0.30 protein_coding synonymous_variant LOW 165A>G Val55Val
M0080956 ABFKLGAC_00033 31670 3 Skin 0.30 protein_coding synonymous_variant LOW 189G>A Gly63Gly
M0080957 ABFKLGAC_00033 31676 3 Skin 0.30 protein_coding synonymous_variant LOW 195G>A Pro65Pro
M0080958 ABFKLGAC_00033 31682 3 Skin 0.30 protein_coding missense_variant MODERATE 201A>C Glu67Asp
M0080959 ABFKLGAC_00033 31683 3 Skin 0.30 protein_coding synonymous_variant LOW 202C>T Leu68Leu
M0080960 ABFKLGAC_00033 31685 3 Skin 0.30 protein_coding synonymous_variant LOW 204A>G Leu68Leu
M0080961 ABFKLGAC_00033 31706 3 Skin 0.30 protein_coding synonymous_variant LOW 225T>C Val75Val
M0080962 ABFKLGAC_00033 31739 3 Skin 0.30 protein_coding synonymous_variant LOW 258T>C Phe86Phe
M0080963 ABFKLGAC_00033 31760 3 Skin 0.30 protein_coding synonymous_variant LOW 279G>A Ala93Ala
M0080964 ABFKLGAC_00033 31829 3 Skin 0.30 protein_coding synonymous_variant LOW 348T>C Arg116Arg
M0080965 ABFKLGAC_00033 31838 3 Skin 0.30 protein_coding synonymous_variant LOW 357T>A Val119Val
M0080966 ABFKLGAC_00033 31851 3 Skin 0.30 protein_coding missense_variant MODERATE 370G>A Glu124Lys
M0080967 ABFKLGAC_00033 31859 3 Skin 0.30 protein_coding synonymous_variant LOW 378T>C Ile126Ile
M0080968 ABFKLGAC_00033 31892 3 Skin 0.30 protein_coding synonymous_variant LOW 411C>A Ala137Ala
M0080969 ABFKLGAC_00033 31925 3 Skin 0.30 protein_coding synonymous_variant LOW 444C>T Thr148Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
ABFKLGAC_00038 ARO:3003902 82.1 1.37e-274 1 458 0.9978 0.9978 phosphonic acid antibiotic antibiotic-resistant UhpT antibiotic target alteration






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
ABFKLGAC_00069 QQC38480.1|GH35 96 0 9 605 0.9851 0.9983





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
ABFKLGAC_00007 3.A.1.12.16 70.4 3.9e-125 2 308 0.9903 0.9904 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily