Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3264
  Reference Plasmid   MET0681_bin.9__k81_5887
  Reference Plasmid Size   25851
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0082753 DCAAPGEF_00005 4465 3 Skin 0.38 protein_coding synonymous_variant LOW 867T>C Ala289Ala
M0082754 DCAAPGEF_00016 17278 3 Skin 0.38 protein_coding synonymous_variant LOW 1005T>C Thr335Thr
M0082755 DCAAPGEF_00016 17299 3 Skin 0.38 protein_coding synonymous_variant LOW 1026T>C Val342Val
M0082756 DCAAPGEF_00016 17314 3 Skin 0.38 protein_coding synonymous_variant LOW 1041A>G Val347Val
M0082757 DCAAPGEF_00016 17320 3 Skin 0.38 protein_coding synonymous_variant LOW 1047A>G Gln349Gln
M0082758 DCAAPGEF_00016 17329 3 Skin 0.38 protein_coding synonymous_variant LOW 1056C>T Arg352Arg
M0082759 DCAAPGEF_00016 17380 3 Skin 0.38 protein_coding synonymous_variant LOW 1107C>T Thr369Thr
M0082760 DCAAPGEF_00016 17508 3 Skin 0.38 protein_coding missense_variant MODERATE 1235T>A Val412Glu
M0082761 DCAAPGEF_00012 17566 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3628A>T None
M0082762 DCAAPGEF_00017 17890 4 Skin 0.50 protein_coding synonymous_variant LOW 219C>A Leu73Leu
M0082763 DCAAPGEF_00017 17935 4 Skin 0.50 protein_coding synonymous_variant LOW 264A>C Thr88Thr
M0082764 DCAAPGEF_00017 17950 4 Skin 0.50 protein_coding synonymous_variant LOW 279A>G Pro93Pro
M0082765 DCAAPGEF_00017 17965 4 Skin 0.50 protein_coding synonymous_variant LOW 294C>T Val98Val
M0082766 DCAAPGEF_00017 17989 4 Skin 0.50 protein_coding synonymous_variant LOW 318A>T Gly106Gly
M0082767 DCAAPGEF_00013 19095 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4668T>C None
M0082768 DCAAPGEF_00013 19097 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4670C>T None
M0082769 DCAAPGEF_00013 19105 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4678T>C None
M0082770 DCAAPGEF_00018 19239 4 Skin 0.50 protein_coding synonymous_variant LOW 21T>A Ile7Ile
M0082771 DCAAPGEF_00018 19338 5 Skin 0.63 protein_coding synonymous_variant LOW 120G>A Thr40Thr
M0082772 DCAAPGEF_00018 19341 5 Skin 0.63 protein_coding synonymous_variant LOW 123C>G Pro41Pro
M0082773 DCAAPGEF_00018 19347 5 Skin 0.63 protein_coding synonymous_variant LOW 129T>C His43His
M0082774 DCAAPGEF_00018 19374 5 Skin 0.63 protein_coding synonymous_variant LOW 156T>C Gly52Gly
M0082775 DCAAPGEF_00018 19450 5 Skin 0.63 protein_coding missense_variant MODERATE 232G>T Val78Leu
M0082776 DCAAPGEF_00018 19488 4 Skin 0.50 protein_coding synonymous_variant LOW 270C>G Ala90Ala
M0082777 DCAAPGEF_00018 19509 5 Skin 0.63 protein_coding synonymous_variant LOW 291T>C Gly97Gly
M0082778 DCAAPGEF_00018 19551 3 Skin 0.38 protein_coding synonymous_variant LOW 333C>T Thr111Thr
M0082779 DCAAPGEF_00018 19614 3 Skin 0.38 protein_coding synonymous_variant LOW 396G>A Val132Val
M0082780 DCAAPGEF_00018 19617 5 Skin 0.63 protein_coding synonymous_variant LOW 399G>A Val133Val
M0082781 DCAAPGEF_00018 19630 5 Skin 0.63 protein_coding missense_variant MODERATE 412A>G Ile138Val
M0082782 DCAAPGEF_00018 19632 5 Skin 0.63 protein_coding synonymous_variant LOW 414C>T Ile138Ile
M0082783 DCAAPGEF_00018 19654 5 Skin 0.63 protein_coding missense_variant MODERATE 436T>C Cys146Arg
M0082784 DCAAPGEF_00018 19704 4 Skin 0.50 protein_coding synonymous_variant LOW 486C>T Val162Val
M0082785 DCAAPGEF_00018 19755 4 Skin 0.50 protein_coding synonymous_variant LOW 537A>C Ala179Ala
M0082786 DCAAPGEF_00018 19756 5 Skin 0.63 protein_coding missense_variant MODERATE 538T>G Ser180Ala
M0082787 DCAAPGEF_00018 19821 5 Skin 0.63 protein_coding synonymous_variant LOW 603G>C Thr201Thr
M0082788 DCAAPGEF_00018 19827 5 Skin 0.63 protein_coding synonymous_variant LOW 609A>G Ser203Ser
M0082789 DCAAPGEF_00018 19839 5 Skin 0.63 protein_coding synonymous_variant LOW 621A>G Lys207Lys
M0082790 DCAAPGEF_00018 19853 5 Skin 0.63 protein_coding missense_variant MODERATE 635C>A Pro212Gln
M0082791 DCAAPGEF_00018 19866 4 Skin 0.50 protein_coding synonymous_variant LOW 648G>A Leu216Leu
M0082792 DCAAPGEF_00018 19896 3 Skin 0.38 protein_coding synonymous_variant LOW 678G>A Val226Val
M0082793 DCAAPGEF_00018 19897 3 Skin 0.38 protein_coding missense_variant MODERATE 679A>G Lys227Glu
M0082794 DCAAPGEF_00018 19917 4 Skin 0.50 protein_coding synonymous_variant LOW 699T>C Asn233Asn
M0082795 DCAAPGEF_00018 19944 4 Skin 0.50 protein_coding synonymous_variant LOW 726T>C Val242Val
M0082796 DCAAPGEF_00018 20007 4 Skin 0.50 protein_coding synonymous_variant LOW 789A>G Glu263Glu
M0082797 DCAAPGEF_00018 20055 4 Skin 0.50 protein_coding synonymous_variant LOW 837T>G Gly279Gly
M0082798 DCAAPGEF_00018 20067 3 Skin 0.38 protein_coding synonymous_variant LOW 849G>A Ala283Ala
M0082799 DCAAPGEF_00018 20073 3 Skin 0.38 protein_coding synonymous_variant LOW 855T>G Ser285Ser
M0082800 DCAAPGEF_00018 20661 3 Skin 0.38 protein_coding synonymous_variant LOW 1443T>C Ser481Ser
M0082801 DCAAPGEF_00018 20711 4 Skin 0.50 protein_coding missense_variant MODERATE 1493G>A Arg498Lys
M0082802 DCAAPGEF_00018 20721 4 Skin 0.50 protein_coding synonymous_variant LOW 1503A>G Pro501Pro
M0082803 DCAAPGEF_00018 20872 4 Skin 0.50 protein_coding missense_variant MODERATE 1654A>G Thr552Ala
M0082804 DCAAPGEF_00019 21042 3 Skin 0.38 protein_coding synonymous_variant LOW 162A>C Gly54Gly
M0082805 DCAAPGEF_00019 21396 4 Skin 0.50 protein_coding synonymous_variant LOW 516G>A Lys172Lys
M0082806 DCAAPGEF_00019 21441 3 Skin 0.38 protein_coding synonymous_variant LOW 561C>T Asp187Asp
M0082807 DCAAPGEF_00019 21486 4 Skin 0.50 protein_coding synonymous_variant LOW 606A>G Leu202Leu
M0082808 DCAAPGEF_00020 21602 3 Skin 0.38 protein_coding synonymous_variant LOW 39A>G Leu13Leu
M0082809 DCAAPGEF_00020 21821 3 Skin 0.38 protein_coding synonymous_variant LOW 258G>A Gly86Gly
M0082810 DCAAPGEF_00020 22706 4 Skin 0.50 protein_coding synonymous_variant LOW 1143G>A Glu381Glu
M0082811 DCAAPGEF_00020 22721 4 Skin 0.50 protein_coding synonymous_variant LOW 1158C>T Ile386Ile
M0082812 DCAAPGEF_00020 22748 3 Skin 0.38 protein_coding synonymous_variant LOW 1185T>C His395His
M0082813 DCAAPGEF_00020 22770 3 Skin 0.38 protein_coding synonymous_variant LOW 1207C>T Leu403Leu
M0082814 DCAAPGEF_00020 22787 4 Skin 0.50 protein_coding synonymous_variant LOW 1224T>C Val408Val
M0082815 DCAAPGEF_00020 22799 4 Skin 0.50 protein_coding synonymous_variant LOW 1236G>A Ala412Ala
M0082816 DCAAPGEF_00020 22847 4 Skin 0.50 protein_coding synonymous_variant LOW 1284G>C Gly428Gly
M0082817 DCAAPGEF_00020 22850 4 Skin 0.50 protein_coding synonymous_variant LOW 1287G>C Gly429Gly
M0082818 DCAAPGEF_00021 22902 5 Skin 0.63 protein_coding missense_variant MODERATE 679C>T Pro227Ser
M0082819 DCAAPGEF_00021 22984 3 Skin 0.38 protein_coding synonymous_variant LOW 597C>T Leu199Leu
M0082820 DCAAPGEF_00021 23023 3 Skin 0.38 protein_coding synonymous_variant LOW 558A>C Val186Val
M0082821 DCAAPGEF_00021 23037 3 Skin 0.38 protein_coding missense_variant MODERATE 544G>A Val182Ile
M0082822 DCAAPGEF_00021 23065 3 Skin 0.38 protein_coding synonymous_variant LOW 516G>C Arg172Arg
M0082823 DCAAPGEF_00021 23251 3 Skin 0.38 protein_coding synonymous_variant LOW 330T>C Ser110Ser
M0082824 DCAAPGEF_00021 23266 3 Skin 0.38 protein_coding synonymous_variant LOW 315A>C Val105Val
M0082825 DCAAPGEF_00021 23272 3 Skin 0.38 protein_coding synonymous_variant LOW 309T>C Gly103Gly
M0082826 DCAAPGEF_00021 23284 3 Skin 0.38 protein_coding synonymous_variant LOW 297C>T Gly99Gly
M0082827 DCAAPGEF_00021 23326 3 Skin 0.38 protein_coding synonymous_variant LOW 255A>G Ser85Ser
M0082828 DCAAPGEF_00021 23344 3 Skin 0.38 protein_coding synonymous_variant LOW 237G>A Leu79Leu
M0082829 DCAAPGEF_00021 23389 3 Skin 0.38 protein_coding synonymous_variant LOW 192C>T His64His
M0082830 DCAAPGEF_00021 23437 3 Skin 0.38 protein_coding synonymous_variant LOW 144A>T Thr48Thr
M0082831 DCAAPGEF_00021 23452 3 Skin 0.38 protein_coding synonymous_variant LOW 129T>C Pro43Pro
M0082832 DCAAPGEF_00021 23518 3 Skin 0.38 protein_coding synonymous_variant LOW 63A>G Leu21Leu
M0082833 DCAAPGEF_00021 23603 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -23T>G None
M0082834 DCAAPGEF_00021 23620 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -40C>T None
M0082835 DCAAPGEF_00022 23834 3 Skin 0.38 protein_coding synonymous_variant LOW 90T>C Asp30Asp
M0082836 DCAAPGEF_00022 23933 3 Skin 0.38 protein_coding synonymous_variant LOW 189T>C Thr63Thr
M0082837 DCAAPGEF_00022 23954 3 Skin 0.38 protein_coding synonymous_variant LOW 210A>T Ser70Ser
M0082838 DCAAPGEF_00017 17926 3 Skin 0.38 protein_coding synonymous_variant LOW 255C>T Gly85Gly
M0082839 DCAAPGEF_00017 18155 3 Skin 0.38 protein_coding missense_variant MODERATE 484A>G Thr162Ala
M0082840 DCAAPGEF_00017 18214 3 Skin 0.38 protein_coding synonymous_variant LOW 543G>A Lys181Lys
M0082841 DCAAPGEF_00017 18344 3 Skin 0.38 protein_coding missense_variant MODERATE 673G>C Gly225Arg
M0082842 DCAAPGEF_00017 18352 3 Skin 0.38 protein_coding synonymous_variant LOW 681G>T Thr227Thr
M0082843 DCAAPGEF_00017 18385 3 Skin 0.38 protein_coding synonymous_variant LOW 714A>G Gly238Gly
M0082844 DCAAPGEF_00017 18400 3 Skin 0.38 protein_coding synonymous_variant LOW 729A>T Ala243Ala
M0082845 DCAAPGEF_00017 18514 4 Skin 0.50 protein_coding synonymous_variant LOW 843A>T Ala281Ala
M0082846 DCAAPGEF_00017 18601 4 Skin 0.50 protein_coding synonymous_variant LOW 930T>G Ala310Ala
M0082847 DCAAPGEF_00017 18655 4 Skin 0.50 protein_coding synonymous_variant LOW 984G>A Ala328Ala
M0082848 DCAAPGEF_00017 18691 3 Skin 0.38 protein_coding synonymous_variant LOW 1020T>C Thr340Thr
M0082849 DCAAPGEF_00017 18724 3 Skin 0.38 protein_coding synonymous_variant LOW 1053A>T Ile351Ile
M0082850 DCAAPGEF_00017 18730 3 Skin 0.38 protein_coding synonymous_variant LOW 1059A>G Thr353Thr
M0082851 DCAAPGEF_00012 18890 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4952C>A None
M0082852 DCAAPGEF_00018 19434 4 Skin 0.50 protein_coding synonymous_variant LOW 216A>G Arg72Arg
M0082853 DCAAPGEF_00018 19459 4 Skin 0.50 protein_coding synonymous_variant LOW 241C>T Leu81Leu
M0082854 DCAAPGEF_00019 20976 3 Skin 0.38 protein_coding synonymous_variant LOW 96T>C Asn32Asn
M0082855 DCAAPGEF_00019 21141 3 Skin 0.38 protein_coding synonymous_variant LOW 261T>C Asn87Asn
M0082856 DCAAPGEF_00020 22545 3 Skin 0.38 protein_coding missense_variant MODERATE 982A>T Ile328Leu
M0082857 DCAAPGEF_00020 22640 3 Skin 0.38 protein_coding synonymous_variant LOW 1077C>T Ser359Ser
M0082858 DCAAPGEF_00021 22884 3 Skin 0.38 protein_coding missense_variant MODERATE 697C>G Gln233Glu
M0082859 DCAAPGEF_00021 22887 3 Skin 0.38 protein_coding missense_variant MODERATE 694A>G Thr232Ala
M0082860 DCAAPGEF_00021 22892 3 Skin 0.38 protein_coding missense_variant MODERATE 689A>C Asn230Thr
M0082861 DCAAPGEF_00021 22904 4 Skin 0.50 protein_coding missense_variant MODERATE 677A>T Gln226Leu
M0082862 DCAAPGEF_00017 18625 3 Skin 0.38 protein_coding synonymous_variant LOW 954T>C Ser318Ser
M0082863 DCAAPGEF_00017 18643 3 Skin 0.38 protein_coding missense_variant MODERATE 972A>T Glu324Asp
M0082864 DCAAPGEF_00021 22915 3 Skin 0.38 protein_coding synonymous_variant LOW 666G>A Lys222Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term