Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3269
  Reference Plasmid   MET0703_bin.1__k81_7885
  Reference Plasmid Size   8245
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0083070 CHCMMGIF_00001 1617 13 Skin 0.65 protein_coding missense_variant MODERATE 829G>A Val277Ile
M0083071 CHCMMGIF_00001 1618 9 Skin 0.45 protein_coding synonymous_variant LOW 828C>T Cys276Cys
M0083072 CHCMMGIF_00001 3253 10 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -808T>C None
M0083073 CHCMMGIF_00004 4535 3 Skin 0.15 protein_coding missense_variant MODERATE 826G>A Gly276Arg
M0083074 CHCMMGIF_00004 4647 12 Skin 0.60 protein_coding missense_variant MODERATE 714G>A Met238Ile
M0083075 CHCMMGIF_00004 5252 19 Skin 0.95 protein_coding missense_variant MODERATE 109C>G Arg37Gly
M0083076 CHCMMGIF_00004 5230 5 Skin 0.25 protein_coding missense_variant MODERATE 131A>G His44Arg
M0083077 CHCMMGIF_00004 5281 3 Skin 0.15 protein_coding missense_variant MODERATE 80C>T Pro27Leu
M0083078 CHCMMGIF_00004 5282 5 Skin 0.25 protein_coding missense_variant MODERATE 79C>A Pro27Thr
M0083079 CHCMMGIF_00004 5286 5 Skin 0.25 protein_coding synonymous_variant LOW 75A>C Ile25Ile
M0083080 CHCMMGIF_00004 5288 5 Skin 0.25 protein_coding missense_variant MODERATE 73A>G Ile25Val
M0083081 CHCMMGIF_00004 5304 5 Skin 0.25 protein_coding synonymous_variant LOW 57A>G Lys19Lys
M0083082 CHCMMGIF_00004 5328 5 Skin 0.25 protein_coding synonymous_variant LOW 33G>C Ala11Ala
M0083083 CHCMMGIF_00004 5357 5 Skin 0.25 protein_coding missense_variant MODERATE 4A>G Lys2Glu
M0083084 CHCMMGIF_00004 5359 5 Skin 0.25 protein_coding start_lost HIGH 2T>G Met1?
M0083085 CHCMMGIF_00004 5360 5 Skin 0.25 protein_coding start_lost HIGH 1A>G Met1?
M0083086 CHCMMGIF_00001 5361 5 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2916C>A None
M0083087 CHCMMGIF_00001 5365 5 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2920T>C None
M0083088 CHCMMGIF_00001 5372 5 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2927A>G None
M0083089 CHCMMGIF_00001 5376 5 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2931G>A None
M0083090 CHCMMGIF_00001 5393 5 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2948A>G None
M0083091 CHCMMGIF_00005 6227 10 Skin 0.50 protein_coding missense_variant MODERATE 766T>G Ser256Ala
M0083092 CHCMMGIF_00001 1323 3 Skin 0.15 protein_coding missense_variant MODERATE 1123T>A Ser375Thr
M0083093 CHCMMGIF_00003 3930 4 Skin 0.20 protein_coding synonymous_variant LOW 66A>C Leu22Leu
M0083094 CHCMMGIF_00004 4433 4 Skin 0.20 protein_coding missense_variant MODERATE 928T>G Ser310Ala
M0083095 CHCMMGIF_00004 4686 4 Skin 0.20 protein_coding synonymous_variant LOW 675A>G Leu225Leu
M0083096 CHCMMGIF_00005 5467 4 Skin 0.20 protein_coding synonymous_variant LOW 6G>C Gly2Gly
M0083097 CHCMMGIF_00005 5524 4 Skin 0.20 protein_coding synonymous_variant LOW 63G>A Leu21Leu
M0083098 CHCMMGIF_00005 5551 4 Skin 0.20 protein_coding synonymous_variant LOW 90G>A Leu30Leu
M0083099 CHCMMGIF_00005 5591 4 Skin 0.20 protein_coding synonymous_variant LOW 130T>C Leu44Leu
M0083100 CHCMMGIF_00005 5620 4 Skin 0.20 protein_coding synonymous_variant LOW 159A>G Gly53Gly
M0083101 CHCMMGIF_00005 5623 4 Skin 0.20 protein_coding synonymous_variant LOW 162G>A Leu54Leu
M0083102 CHCMMGIF_00005 5644 4 Skin 0.20 protein_coding synonymous_variant LOW 183C>T Pro61Pro
M0083103 CHCMMGIF_00005 5658 4 Skin 0.20 protein_coding missense_variant MODERATE 197G>A Gly66Glu
M0083104 CHCMMGIF_00005 5659 4 Skin 0.20 protein_coding synonymous_variant LOW 198G>A Gly66Gly
M0083105 CHCMMGIF_00005 5710 4 Skin 0.20 protein_coding synonymous_variant LOW 249T>C Leu83Leu
M0083106 CHCMMGIF_00005 5743 4 Skin 0.20 protein_coding synonymous_variant LOW 282C>T Ile94Ile
M0083107 CHCMMGIF_00005 5749 4 Skin 0.20 protein_coding synonymous_variant LOW 288G>A Gly96Gly
M0083108 CHCMMGIF_00005 5920 4 Skin 0.20 protein_coding synonymous_variant LOW 459T>C Leu153Leu
M0083109 CHCMMGIF_00005 5980 4 Skin 0.20 protein_coding synonymous_variant LOW 519T>C Gly173Gly
M0083110 CHCMMGIF_00005 6293 4 Skin 0.20 protein_coding synonymous_variant LOW 832C>T Leu278Leu
M0083111 CHCMMGIF_00006 6957 3 Skin 0.15 protein_coding synonymous_variant LOW 312T>C Asp104Asp
M0083112 CHCMMGIF_00006 6969 3 Skin 0.15 protein_coding synonymous_variant LOW 324G>C Ala108Ala
M0083113 CHCMMGIF_00006 6993 3 Skin 0.15 protein_coding synonymous_variant LOW 348G>A Val116Val
M0083114 CHCMMGIF_00006 6999 3 Skin 0.15 protein_coding synonymous_variant LOW 354G>A Gly118Gly
M0083115 CHCMMGIF_00006 7016 3 Skin 0.15 protein_coding missense_variant MODERATE 371G>A Gly124Asp
M0083116 CHCMMGIF_00006 7028 3 Skin 0.15 protein_coding missense_variant MODERATE 383C>T Ala128Val
M0083117 CHCMMGIF_00006 7041 3 Skin 0.15 protein_coding synonymous_variant LOW 396G>A Glu132Glu
M0083118 CHCMMGIF_00006 7044 3 Skin 0.15 protein_coding synonymous_variant LOW 399A>G Gly133Gly
M0083119 CHCMMGIF_00006 7047 3 Skin 0.15 protein_coding synonymous_variant LOW 402A>G Ala134Ala
M0083120 CHCMMGIF_00006 7061 3 Skin 0.15 protein_coding missense_variant MODERATE 416T>C Met139Thr
M0083121 CHCMMGIF_00006 7062 3 Skin 0.15 protein_coding missense_variant MODERATE 417G>A Met139Ile
M0083122 CHCMMGIF_00006 7131 3 Skin 0.15 protein_coding synonymous_variant LOW 486A>G Val162Val
M0083123 CHCMMGIF_00006 7159 4 Skin 0.20 protein_coding missense_variant MODERATE 514T>C Cys172Arg
M0083124 CHCMMGIF_00006 7161 3 Skin 0.15 protein_coding synonymous_variant LOW 516T>C Cys172Cys
M0083125 CHCMMGIF_00006 7170 3 Skin 0.15 protein_coding synonymous_variant LOW 525G>A Pro175Pro
M0083126 CHCMMGIF_00006 7193 3 Skin 0.15 protein_coding missense_variant MODERATE 548A>G Glu183Gly
M0083127 CHCMMGIF_00001 7252 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4807T>C None
M0083128 CHCMMGIF_00007 7304 3 Skin 0.15 protein_coding synonymous_variant LOW 24T>C Ala8Ala
M0083129 CHCMMGIF_00007 7331 3 Skin 0.15 protein_coding synonymous_variant LOW 51G>A Ala17Ala
M0083130 CHCMMGIF_00007 7346 3 Skin 0.15 protein_coding synonymous_variant LOW 66G>C Ala22Ala
M0083131 CHCMMGIF_00007 7361 3 Skin 0.15 protein_coding synonymous_variant LOW 81C>T Ser27Ser
M0083132 CHCMMGIF_00007 7391 4 Skin 0.20 protein_coding synonymous_variant LOW 111A>G Ala37Ala
M0083133 CHCMMGIF_00007 7425 3 Skin 0.15 protein_coding missense_variant MODERATE 145C>A Gln49Lys
M0083134 CHCMMGIF_00007 7475 3 Skin 0.15 protein_coding synonymous_variant LOW 195C>T Thr65Thr
M0083135 CHCMMGIF_00007 7484 3 Skin 0.15 protein_coding synonymous_variant LOW 204T>G Ser68Ser
M0083136 CHCMMGIF_00007 7491 3 Skin 0.15 protein_coding missense_variant MODERATE 211A>G Ser71Gly
M0083137 CHCMMGIF_00007 7505 3 Skin 0.15 protein_coding synonymous_variant LOW 225C>T Leu75Leu
M0083138 CHCMMGIF_00007 7539 3 Skin 0.15 protein_coding missense_variant MODERATE 259A>G Lys87Glu
M0083139 CHCMMGIF_00007 7565 3 Skin 0.15 protein_coding synonymous_variant LOW 285T>C Asp95Asp
M0083140 CHCMMGIF_00007 7589 3 Skin 0.15 protein_coding synonymous_variant LOW 309T>C Ile103Ile
M0083141 CHCMMGIF_00007 7598 3 Skin 0.15 protein_coding synonymous_variant LOW 318T>C Ile106Ile
M0083142 CHCMMGIF_00007 7628 3 Skin 0.15 protein_coding synonymous_variant LOW 348A>G Glu116Glu
M0083143 CHCMMGIF_00007 7630 3 Skin 0.15 protein_coding missense_variant MODERATE 350A>G Asp117Gly
M0083144 CHCMMGIF_00007 7632 3 Skin 0.15 protein_coding missense_variant MODERATE 352C>T Arg118Cys
M0083145 CHCMMGIF_00007 7677 3 Skin 0.15 protein_coding missense_variant MODERATE 397C>G Leu133Val
M0083146 CHCMMGIF_00007 7682 3 Skin 0.15 protein_coding synonymous_variant LOW 402T>C His134His
M0083147 CHCMMGIF_00007 7697 3 Skin 0.15 protein_coding missense_variant MODERATE 417C>G Asp139Glu
M0083148 CHCMMGIF_00007 7718 3 Skin 0.15 protein_coding synonymous_variant LOW 438A>G Lys146Lys
M0083149 CHCMMGIF_00007 7730 3 Skin 0.15 protein_coding synonymous_variant LOW 450T>C Val150Val
M0083150 CHCMMGIF_00007 7742 3 Skin 0.15 protein_coding synonymous_variant LOW 462T>C Asp154Asp
M0083151 CHCMMGIF_00007 7757 3 Skin 0.15 protein_coding synonymous_variant LOW 477T>C Ile159Ile
M0083152 CHCMMGIF_00007 7852 3 Skin 0.15 protein_coding missense_variant MODERATE 572T>C Leu191Pro
M0083153 CHCMMGIF_00007 7897 3 Skin 0.15 protein_coding missense_variant MODERATE 617C>A Ala206Asp
M0083154 CHCMMGIF_00007 7898 3 Skin 0.15 protein_coding synonymous_variant LOW 618C>G Ala206Ala
M0083155 CHCMMGIF_00007 7922 3 Skin 0.15 protein_coding synonymous_variant LOW 642T>C Asp214Asp
M0083156 CHCMMGIF_00007 7928 3 Skin 0.15 protein_coding synonymous_variant LOW 648A>G Lys216Lys
M0083157 CHCMMGIF_00007 8000 3 Skin 0.15 protein_coding synonymous_variant LOW 720G>A Leu240Leu
M0083158 CHCMMGIF_00007 8006 3 Skin 0.15 protein_coding synonymous_variant LOW 726T>C Val242Val
M0083159 CHCMMGIF_00007 8036 3 Skin 0.15 protein_coding missense_variant MODERATE 756G>T Glu252Asp
M0083160 CHCMMGIF_00007 8057 3 Skin 0.15 protein_coding synonymous_variant LOW 777C>A Ala259Ala
M0083161 CHCMMGIF_00007 8065 3 Skin 0.15 protein_coding missense_variant MODERATE 785G>A Arg262Lys
M0083162 CHCMMGIF_00007 8075 3 Skin 0.15 protein_coding synonymous_variant LOW 795C>T Ile265Ile
M0083163 CHCMMGIF_00007 8105 3 Skin 0.15 protein_coding synonymous_variant LOW 825G>A Gly275Gly
M0083164 CHCMMGIF_00007 8108 3 Skin 0.15 protein_coding synonymous_variant LOW 828A>G Leu276Leu
M0083165 CHCMMGIF_00007 8150 3 Skin 0.15 protein_coding synonymous_variant LOW 870T>C Arg290Arg
M0083166 CHCMMGIF_00007 8156 3 Skin 0.15 protein_coding synonymous_variant LOW 876T>C Ser292Ser
M0083167 CHCMMGIF_00007 8177 3 Skin 0.15 protein_coding synonymous_variant LOW 897A>C Ala299Ala
M0083168 CHCMMGIF_00001 1861 4 Skin 0.20 protein_coding synonymous_variant LOW 585T>C Ser195Ser
M0083169 CHCMMGIF_00001 1948 5 Skin 0.25 protein_coding synonymous_variant LOW 498A>C Thr166Thr
M0083170 CHCMMGIF_00002 3033 3 Skin 0.15 protein_coding synonymous_variant LOW 144A>G Gly48Gly
M0083171 CHCMMGIF_00003 3396 4 Skin 0.20 protein_coding synonymous_variant LOW 600A>G Ser200Ser
M0083172 CHCMMGIF_00006 6703 3 Skin 0.15 protein_coding missense_variant MODERATE 58C>T Arg20Trp
M0083173 CHCMMGIF_00001 1930 3 Skin 0.15 protein_coding synonymous_variant LOW 516T>C Ile172Ile
M0083174 CHCMMGIF_00001 1933 3 Skin 0.15 protein_coding synonymous_variant LOW 513A>G Glu171Glu
M0083175 CHCMMGIF_00001 1999 3 Skin 0.15 protein_coding synonymous_variant LOW 447T>C Ile149Ile
M0083176 CHCMMGIF_00001 2066 3 Skin 0.15 protein_coding missense_variant MODERATE 380G>A Gly127Asp
M0083177 CHCMMGIF_00001 2257 3 Skin 0.15 protein_coding missense_variant MODERATE 189A>G Ile63Met
M0083178 CHCMMGIF_00002 2452 3 Skin 0.15 protein_coding missense_variant MODERATE 725C>T Ala242Val
M0083179 CHCMMGIF_00002 2599 3 Skin 0.15 protein_coding missense_variant MODERATE 578G>A Gly193Asp
M0083180 CHCMMGIF_00002 2853 3 Skin 0.15 protein_coding synonymous_variant LOW 324T>C Ser108Ser
M0083181 CHCMMGIF_00002 3144 3 Skin 0.15 protein_coding missense_variant MODERATE 33G>A Met11Ile
M0083182 CHCMMGIF_00002 3145 3 Skin 0.15 protein_coding missense_variant MODERATE 32T>C Met11Thr
M0083183 CHCMMGIF_00002 3152 3 Skin 0.15 protein_coding missense_variant MODERATE 25A>T Thr9Ser
M0083184 CHCMMGIF_00001 3290 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -845T>C None
M0083185 CHCMMGIF_00001 3292 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -847A>G None
M0083186 CHCMMGIF_00001 3293 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -848A>G None
M0083187 CHCMMGIF_00003 3519 3 Skin 0.15 protein_coding synonymous_variant LOW 477T>C Thr159Thr
M0083188 CHCMMGIF_00003 3544 3 Skin 0.15 protein_coding missense_variant MODERATE 452T>C Ile151Thr
M0083189 CHCMMGIF_00003 3549 3 Skin 0.15 protein_coding synonymous_variant LOW 447G>C Ala149Ala
M0083190 CHCMMGIF_00003 3597 3 Skin 0.15 protein_coding synonymous_variant LOW 399T>C Thr133Thr
M0083191 CHCMMGIF_00003 3600 3 Skin 0.15 protein_coding synonymous_variant LOW 396C>T Ala132Ala
M0083192 CHCMMGIF_00003 3606 3 Skin 0.15 protein_coding synonymous_variant LOW 390G>A Pro130Pro
M0083193 CHCMMGIF_00003 3609 3 Skin 0.15 protein_coding synonymous_variant LOW 387C>G Ala129Ala
M0083194 CHCMMGIF_00003 3618 3 Skin 0.15 protein_coding synonymous_variant LOW 378T>C Ser126Ser
M0083195 CHCMMGIF_00003 3621 3 Skin 0.15 protein_coding synonymous_variant LOW 375C>T Asp125Asp
M0083196 CHCMMGIF_00003 3633 3 Skin 0.15 protein_coding synonymous_variant LOW 363C>G Val121Val
M0083197 CHCMMGIF_00003 3642 3 Skin 0.15 protein_coding synonymous_variant LOW 354C>T Ile118Ile
M0083198 CHCMMGIF_00003 3669 3 Skin 0.15 protein_coding synonymous_variant LOW 327T>C Ala109Ala
M0083199 CHCMMGIF_00003 3696 7 Skin 0.35 protein_coding synonymous_variant LOW 300G>A Gly100Gly
M0083200 CHCMMGIF_00003 3729 3 Skin 0.15 protein_coding synonymous_variant LOW 267T>C Leu89Leu
M0083201 CHCMMGIF_00003 3831 3 Skin 0.15 protein_coding synonymous_variant LOW 165T>C Leu55Leu
M0083202 CHCMMGIF_00003 3840 3 Skin 0.15 protein_coding synonymous_variant LOW 156T>C Asp52Asp
M0083203 CHCMMGIF_00004 4212 3 Skin 0.15 protein_coding missense_variant MODERATE 1149T>A Asp383Glu
M0083204 CHCMMGIF_00001 1887 3 Skin 0.15 protein_coding missense_variant MODERATE 559G>A Gly187Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term