Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3276
  Reference Plasmid   MET0731_bin.1__k81_540
  Reference Plasmid Size   21157
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0083247 CMEGEGAK_00002 1408 12 Skin 0.02 protein_coding synonymous_variant LOW 567G>A Ala189Ala
M0083248 CMEGEGAK_00005 5354 26 Skin 0.05 protein_coding synonymous_variant LOW 210T>C Gly70Gly
M0083249 CMEGEGAK_00004 7111 81 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2560T>C None
M0083250 CMEGEGAK_00004 8869 111 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4318G>A None
M0083251 CMEGEGAK_00012 9571 32 Skin 0.06 protein_coding missense_variant MODERATE 578C>T Thr193Ile
M0083252 CMEGEGAK_00012 9592 29 Skin 0.06 protein_coding missense_variant MODERATE 557T>C Leu186Pro
M0083253 CMEGEGAK_00012 9609 32 Skin 0.06 protein_coding synonymous_variant LOW 540A>G Val180Val
M0083254 CMEGEGAK_00012 10018 215 Skin 0.41 protein_coding missense_variant MODERATE 131G>A Gly44Asp
M0083255 CMEGEGAK_00004 9217 72 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4666C>A None
M0083256 CMEGEGAK_00005 6095 63 Skin 0.12 protein_coding missense_variant MODERATE 951C>G Asn317Lys
M0083257 CMEGEGAK_00004 7131 98 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2580A>G None
M0083258 CMEGEGAK_00007 6787 35 Skin 0.07 protein_coding missense_variant MODERATE 71T>C Ile24Thr
M0083259 CMEGEGAK_00004 9114 61 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4563A>G None
M0083260 CMEGEGAK_00013 10632 69 Skin 0.13 protein_coding missense_variant MODERATE 800C>A Ala267Asp
M0083261 CMEGEGAK_00015 13385 55 Skin 0.10 protein_coding synonymous_variant LOW 990G>A Gln330Gln
M0083262 CMEGEGAK_00016 14799 52 Skin 0.10 protein_coding synonymous_variant LOW 216G>A Glu72Glu
M0083263 CMEGEGAK_00017 16703 46 Skin 0.09 protein_coding synonymous_variant LOW 975C>T Leu325Leu
M0083264 CMEGEGAK_00018 17109 53 Skin 0.10 protein_coding missense_variant MODERATE 344C>T Pro115Leu
M0083265 CMEGEGAK_00002 6305 80 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4331T>A None
M0083266 CMEGEGAK_00003 1069 8 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -1175C>T None
M0083267 CMEGEGAK_00002 1203 6 Skin 0.01 protein_coding missense_variant MODERATE 772A>G Thr258Ala
M0083268 CMEGEGAK_00002 1389 30 Skin 0.06 protein_coding missense_variant MODERATE 586G>C Gly196Arg
M0083269 CMEGEGAK_00002 1495 6 Skin 0.01 protein_coding synonymous_variant LOW 480A>G Ala160Ala
M0083270 CMEGEGAK_00002 1540 6 Skin 0.01 protein_coding synonymous_variant LOW 435A>G Ser145Ser
M0083271 CMEGEGAK_00002 1828 12 Skin 0.02 protein_coding synonymous_variant LOW 147G>A Ala49Ala
M0083272 CMEGEGAK_00002 1834 31 Skin 0.06 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0083273 CMEGEGAK_00003 2371 9 Skin 0.02 protein_coding missense_variant MODERATE 128T>C Val43Ala
M0083274 CMEGEGAK_00003 2481 10 Skin 0.02 protein_coding missense_variant MODERATE 238A>G Ile80Val
M0083275 CMEGEGAK_00003 2530 10 Skin 0.02 protein_coding missense_variant MODERATE 287T>C Leu96Pro
M0083276 CMEGEGAK_00003 2566 10 Skin 0.02 protein_coding missense_variant MODERATE 323A>G Glu108Gly
M0083277 CMEGEGAK_00004 3081 24 Skin 0.05 protein_coding missense_variant MODERATE 1471A>G Thr491Ala
M0083278 CMEGEGAK_00004 3148 10 Skin 0.02 protein_coding synonymous_variant LOW 1404G>A Ala468Ala
M0083279 CMEGEGAK_00004 3222 10 Skin 0.02 protein_coding missense_variant MODERATE 1330A>C Ser444Arg
M0083280 CMEGEGAK_00004 3610 20 Skin 0.04 protein_coding synonymous_variant LOW 942A>G Gly314Gly
M0083281 CMEGEGAK_00004 3709 17 Skin 0.03 protein_coding synonymous_variant LOW 843C>T Asn281Asn
M0083282 CMEGEGAK_00004 3978 14 Skin 0.03 protein_coding missense_variant MODERATE 574G>A Ala192Thr
M0083283 CMEGEGAK_00004 4457 17 Skin 0.03 protein_coding missense_variant MODERATE 95A>C Glu32Ala
M0083284 CMEGEGAK_00004 4477 16 Skin 0.03 protein_coding synonymous_variant LOW 75G>A Val25Val
M0083285 CMEGEGAK_00004 4478 16 Skin 0.03 protein_coding missense_variant MODERATE 74T>C Val25Ala
M0083286 CMEGEGAK_00004 4479 16 Skin 0.03 protein_coding missense_variant MODERATE 73G>A Val25Met
M0083287 CMEGEGAK_00004 4485 16 Skin 0.03 protein_coding missense_variant MODERATE 67A>G Thr23Ala
M0083288 CMEGEGAK_00002 4713 24 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2739G>A None
M0083289 CMEGEGAK_00002 4724 24 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2750T>C None
M0083290 CMEGEGAK_00002 4814 51 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2840C>T None
M0083291 CMEGEGAK_00002 4818 26 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2844A>G None
M0083292 CMEGEGAK_00002 4855 27 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2881G>A None
M0083293 CMEGEGAK_00002 4886 27 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2912A>G None
M0083294 CMEGEGAK_00005 5212 52 Skin 0.10 protein_coding missense_variant MODERATE 68C>T Thr23Ile
M0083295 CMEGEGAK_00005 5224 22 Skin 0.04 protein_coding missense_variant MODERATE 80T>C Val27Ala
M0083296 CMEGEGAK_00005 5250 21 Skin 0.04 protein_coding synonymous_variant LOW 106T>C Leu36Leu
M0083297 CMEGEGAK_00005 5947 25 Skin 0.05 protein_coding missense_variant MODERATE 803C>T Thr268Met
M0083298 CMEGEGAK_00005 5975 25 Skin 0.05 protein_coding synonymous_variant LOW 831T>C Phe277Phe
M0083299 CMEGEGAK_00002 6263 31 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4289G>A None
M0083300 CMEGEGAK_00004 7239 54 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2688T>C None
M0083301 CMEGEGAK_00004 7241 54 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2690A>G None
M0083302 CMEGEGAK_00004 7282 53 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2731A>G None
M0083303 CMEGEGAK_00010 8580 32 Skin 0.06 protein_coding missense_variant MODERATE 199C>T Leu67Phe
M0083304 CMEGEGAK_00004 8832 41 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4281G>C None
M0083305 CMEGEGAK_00004 8955 35 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4404T>C None
M0083306 CMEGEGAK_00004 9019 31 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4468A>T None
M0083307 CMEGEGAK_00013 10542 37 Skin 0.07 protein_coding missense_variant MODERATE 890A>C Asp297Ala
M0083308 CMEGEGAK_00005 5766 76 Skin 0.14 protein_coding missense_variant MODERATE 622T>G Tyr208Asp
M0083309 CMEGEGAK_00005 6024 38 Skin 0.07 protein_coding missense_variant MODERATE 880G>T Ala294Ser
M0083310 CMEGEGAK_00005 6025 16 Skin 0.03 protein_coding missense_variant MODERATE 881C>T Ala294Val
M0083311 CMEGEGAK_00006 6403 26 Skin 0.05 protein_coding missense_variant MODERATE 248C>T Pro83Leu
M0083312 CMEGEGAK_00006 6520 100 Skin 0.19 protein_coding missense_variant MODERATE 131T>G Leu44Arg
M0083313 CMEGEGAK_00006 6605 16 Skin 0.03 protein_coding synonymous_variant LOW 46C>T Leu16Leu
M0083314 CMEGEGAK_00010 8410 14 Skin 0.03 protein_coding missense_variant MODERATE 29C>T Ser10Phe
M0083315 CMEGEGAK_00012 9865 67 Skin 0.13 protein_coding missense_variant MODERATE 284G>A Arg95His
M0083316 CMEGEGAK_00012 9898 50 Skin 0.09 protein_coding missense_variant MODERATE 251A>G Asn84Ser
M0083317 CMEGEGAK_00012 9904 50 Skin 0.09 protein_coding missense_variant MODERATE 245A>G Lys82Arg
M0083318 CMEGEGAK_00014 11757 80 Skin 0.15 protein_coding missense_variant MODERATE 1269G>T Met423Ile
M0083319 CMEGEGAK_00014 12198 6 Skin 0.01 protein_coding synonymous_variant LOW 828C>T Val276Val
M0083320 CMEGEGAK_00016 14913 30 Skin 0.06 protein_coding synonymous_variant LOW 330C>G Pro110Pro
M0083321 CMEGEGAK_00018 17252 24 Skin 0.05 protein_coding missense_variant MODERATE 487C>G Leu163Val
M0083322 CMEGEGAK_00005 5263 56 Skin 0.11 protein_coding missense_variant MODERATE 119C>T Ala40Val
M0083323 CMEGEGAK_00002 2734 8 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -760G>A None
M0083324 CMEGEGAK_00002 2971 84 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -997C>G None
M0083325 CMEGEGAK_00004 3339 17 Skin 0.03 protein_coding missense_variant MODERATE 1213G>A Ala405Thr
M0083326 CMEGEGAK_00004 4108 13 Skin 0.02 protein_coding synonymous_variant LOW 444T>C Tyr148Tyr
M0083327 CMEGEGAK_00002 4645 18 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2671A>C None
M0083328 CMEGEGAK_00002 5051 25 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3077A>G None
M0083329 CMEGEGAK_00002 6341 28 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4367A>C None
M0083330 CMEGEGAK_00006 6384 29 Skin 0.06 protein_coding synonymous_variant LOW 267G>A Pro89Pro
M0083331 CMEGEGAK_00006 6472 40 Skin 0.08 protein_coding missense_variant MODERATE 179T>C Ile60Thr
M0083332 CMEGEGAK_00011 8784 35 Skin 0.07 protein_coding synonymous_variant LOW 91T>C Leu31Leu
M0083333 CMEGEGAK_00013 10898 45 Skin 0.09 protein_coding synonymous_variant LOW 534T>C Pro178Pro
M0083334 CMEGEGAK_00013 10909 7 Skin 0.01 protein_coding synonymous_variant LOW 523T>C Leu175Leu
M0083335 CMEGEGAK_00013 10955 8 Skin 0.02 protein_coding synonymous_variant LOW 477G>A Gly159Gly
M0083336 CMEGEGAK_00013 10997 7 Skin 0.01 protein_coding synonymous_variant LOW 435G>A Val145Val
M0083337 CMEGEGAK_00013 11396 6 Skin 0.01 protein_coding stop_gained HIGH 36C>A Cys12*
M0083338 CMEGEGAK_00008 6993 33 Skin 0.06 protein_coding synonymous_variant LOW 70T>C Leu24Leu
M0083339 CMEGEGAK_00004 8886 31 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4335C>T None
M0083340 CMEGEGAK_00004 8887 31 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4336G>A None
M0083341 CMEGEGAK_00004 8896 26 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4345T>C None
M0083342 CMEGEGAK_00012 9871 55 Skin 0.10 protein_coding missense_variant MODERATE 278A>G Lys93Arg
M0083343 CMEGEGAK_00004 9252 16 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4701G>A None
M0083344 CMEGEGAK_00013 10525 11 Skin 0.02 protein_coding missense_variant MODERATE 907G>A Ala303Thr
M0083345 CMEGEGAK_00017 16369 14 Skin 0.03 protein_coding missense_variant MODERATE 641T>C Val214Ala
M0083346 CMEGEGAK_00017 16388 14 Skin 0.03 protein_coding synonymous_variant LOW 660C>T Gly220Gly
M0083347 CMEGEGAK_00017 16407 14 Skin 0.03 protein_coding missense_variant MODERATE 679T>G Leu227Val
M0083348 CMEGEGAK_00020 20352 7 Skin 0.01 protein_coding missense_variant MODERATE 820C>T Pro274Ser
M0083349 CMEGEGAK_00002 4736 31 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2762G>A None
M0083350 CMEGEGAK_00006 6517 9 Skin 0.02 protein_coding missense_variant MODERATE 134T>C Phe45Ser
M0083351 CMEGEGAK_00015 14007 19 Skin 0.04 protein_coding missense_variant MODERATE 368A>G His123Arg
M0083352 CMEGEGAK_00002 4965 10 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -2991C>T None
M0083353 CMEGEGAK_00005 5637 53 Skin 0.10 protein_coding missense_variant MODERATE 493G>T Val165Phe
M0083354 CMEGEGAK_00005 5757 11 Skin 0.02 protein_coding missense_variant MODERATE 613G>C Val205Leu
M0083355 CMEGEGAK_00004 7380 10 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -2829G>A None
M0083356 CMEGEGAK_00006 10269 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3619G>A None
M0083357 CMEGEGAK_00013 10979 36 Skin 0.07 protein_coding synonymous_variant LOW 453G>A Ala151Ala
M0083358 CMEGEGAK_00013 11254 17 Skin 0.03 protein_coding missense_variant MODERATE 178G>A Glu60Lys
M0083359 CMEGEGAK_00014 12581 7 Skin 0.01 protein_coding missense_variant MODERATE 445G>A Val149Met
M0083360 CMEGEGAK_00017 16223 17 Skin 0.03 protein_coding synonymous_variant LOW 495C>T Ala165Ala
M0083361 CMEGEGAK_00004 7742 14 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3191G>A None
M0083362 CMEGEGAK_00006 11479 42 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4829G>A None
M0083363 CMEGEGAK_00006 11514 37 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4864G>A None
M0083364 CMEGEGAK_00006 11515 37 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4865T>C None
M0083365 CMEGEGAK_00006 11518 37 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4868T>C None
M0083366 CMEGEGAK_00006 11539 36 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4889G>A None
M0083367 CMEGEGAK_00006 11564 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4914A>C None
M0083368 CMEGEGAK_00006 11574 38 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4924G>A None
M0083369 CMEGEGAK_00006 11579 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4929G>A None
M0083370 CMEGEGAK_00006 11599 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4949G>A None
M0083371 CMEGEGAK_00006 11613 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4963C>T None
M0083372 CMEGEGAK_00006 11627 37 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4977A>T None
M0083373 CMEGEGAK_00006 11644 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4994A>C None
M0083374 CMEGEGAK_00006 11649 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4999G>C None
M0083375 CMEGEGAK_00007 11656 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4799C>G None
M0083376 CMEGEGAK_00007 11667 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4810G>A None
M0083377 CMEGEGAK_00007 11671 34 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4814A>G None
M0083378 CMEGEGAK_00007 11685 33 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4828A>T None
M0083379 CMEGEGAK_00014 11751 28 Skin 0.05 protein_coding missense_variant MODERATE 1275G>T Gln425His
M0083380 CMEGEGAK_00014 11760 28 Skin 0.05 protein_coding synonymous_variant LOW 1266G>T Gly422Gly
M0083381 CMEGEGAK_00014 11769 32 Skin 0.06 protein_coding synonymous_variant LOW 1257T>C Pro419Pro
M0083382 CMEGEGAK_00014 11770 28 Skin 0.05 protein_coding missense_variant MODERATE 1256C>A Pro419His
M0083383 CMEGEGAK_00014 11778 28 Skin 0.05 protein_coding synonymous_variant LOW 1248A>G Glu416Glu
M0083384 CMEGEGAK_00014 11799 32 Skin 0.06 protein_coding synonymous_variant LOW 1227G>A Gly409Gly
M0083385 CMEGEGAK_00014 11820 27 Skin 0.05 protein_coding synonymous_variant LOW 1206G>C Ser402Ser
M0083386 CMEGEGAK_00017 16016 18 Skin 0.03 protein_coding synonymous_variant LOW 288C>T Gly96Gly
M0083387 CMEGEGAK_00017 16092 17 Skin 0.03 protein_coding synonymous_variant LOW 364C>T Leu122Leu
M0083388 CMEGEGAK_00017 16095 17 Skin 0.03 protein_coding missense_variant MODERATE 367C>T Pro123Ser
M0083389 CMEGEGAK_00017 16109 17 Skin 0.03 protein_coding synonymous_variant LOW 381C>T Arg127Arg
M0083390 CMEGEGAK_00017 16121 17 Skin 0.03 protein_coding synonymous_variant LOW 393A>G Gly131Gly
M0083391 CMEGEGAK_00017 16124 17 Skin 0.03 protein_coding synonymous_variant LOW 396C>T Gly132Gly
M0083392 CMEGEGAK_00017 16461 15 Skin 0.03 protein_coding missense_variant MODERATE 733G>T Val245Leu
M0083393 CMEGEGAK_00001 725 10 Skin 0.02 protein_coding missense_variant MODERATE 17C>T Thr6Ile
M0083394 CMEGEGAK_00009 7983 14 Skin 0.03 protein_coding missense_variant MODERATE 175C>T Leu59Phe
M0083395 CMEGEGAK_00002 4996 18 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3022G>A None
M0083396 CMEGEGAK_00007 6768 23 Skin 0.04 protein_coding synonymous_variant LOW 90C>T Asp30Asp
M0083397 CMEGEGAK_00008 6861 31 Skin 0.06 protein_coding missense_variant MODERATE 202A>G Thr68Ala
M0083398 CMEGEGAK_00008 6903 50 Skin 0.09 protein_coding synonymous_variant LOW 160A>C Arg54Arg
M0083399 CMEGEGAK_00008 6957 33 Skin 0.06 protein_coding missense_variant MODERATE 106T>G Tyr36Asp
M0083400 CMEGEGAK_00010 8473 21 Skin 0.04 protein_coding missense_variant MODERATE 92T>C Leu31Pro
M0083401 CMEGEGAK_00004 8670 8 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4119A>G None
M0083402 CMEGEGAK_00012 9779 6 Skin 0.01 protein_coding missense_variant MODERATE 370A>C Thr124Pro
M0083403 CMEGEGAK_00004 3151 9 Skin 0.02 protein_coding synonymous_variant LOW 1401G>A Gln467Gln
M0083404 CMEGEGAK_00004 3664 10 Skin 0.02 protein_coding synonymous_variant LOW 888G>A Gly296Gly
M0083405 CMEGEGAK_00004 4494 17 Skin 0.03 protein_coding missense_variant MODERATE 58G>A Gly20Ser
M0083406 CMEGEGAK_00002 4742 24 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2768C>T None
M0083407 CMEGEGAK_00002 4787 25 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2813A>G None
M0083408 CMEGEGAK_00002 2816 19 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -842A>G None
M0083409 CMEGEGAK_00013 11051 36 Skin 0.07 protein_coding synonymous_variant LOW 381T>C His127His
M0083410 CMEGEGAK_00013 11198 39 Skin 0.07 protein_coding synonymous_variant LOW 234T>C Asn78Asn
M0083411 CMEGEGAK_00013 11398 36 Skin 0.07 protein_coding missense_variant MODERATE 34T>A Cys12Ser
M0083412 CMEGEGAK_00013 11418 36 Skin 0.07 protein_coding missense_variant MODERATE 14G>A Gly5Glu
M0083413 CMEGEGAK_00013 11428 38 Skin 0.07 protein_coding missense_variant MODERATE 4T>C Tyr2His
M0083414 CMEGEGAK_00014 11904 23 Skin 0.04 protein_coding synonymous_variant LOW 1122A>G Gly374Gly
M0083415 CMEGEGAK_00014 11963 26 Skin 0.05 protein_coding missense_variant MODERATE 1063T>C Cys355Arg
M0083416 CMEGEGAK_00014 11964 25 Skin 0.05 protein_coding synonymous_variant LOW 1062T>C Tyr354Tyr
M0083417 CMEGEGAK_00014 11973 18 Skin 0.03 protein_coding synonymous_variant LOW 1053T>C Pro351Pro
M0083418 CMEGEGAK_00014 11983 18 Skin 0.03 protein_coding missense_variant MODERATE 1043C>A Thr348Lys
M0083419 CMEGEGAK_00014 11985 18 Skin 0.03 protein_coding synonymous_variant LOW 1041G>A Glu347Glu
M0083420 CMEGEGAK_00014 12018 18 Skin 0.03 protein_coding synonymous_variant LOW 1008G>A Gly336Gly
M0083421 CMEGEGAK_00014 12066 19 Skin 0.04 protein_coding synonymous_variant LOW 960A>G Gly320Gly
M0083422 CMEGEGAK_00014 12084 19 Skin 0.04 protein_coding synonymous_variant LOW 942A>C Pro314Pro
M0083423 CMEGEGAK_00014 12110 17 Skin 0.03 protein_coding missense_variant MODERATE 916A>G Thr306Ala
M0083424 CMEGEGAK_00014 12120 17 Skin 0.03 protein_coding synonymous_variant LOW 906C>T Gly302Gly
M0083425 CMEGEGAK_00014 12123 8 Skin 0.02 protein_coding synonymous_variant LOW 903G>A Leu301Leu
M0083426 CMEGEGAK_00014 12125 17 Skin 0.03 protein_coding synonymous_variant LOW 901C>T Leu301Leu
M0083427 CMEGEGAK_00014 12142 17 Skin 0.03 protein_coding missense_variant MODERATE 884G>A Arg295His
M0083428 CMEGEGAK_00014 12162 17 Skin 0.03 protein_coding synonymous_variant LOW 864G>A Glu288Glu
M0083429 CMEGEGAK_00014 12206 17 Skin 0.03 protein_coding missense_variant MODERATE 820G>A Asp274Asn
M0083430 CMEGEGAK_00014 12225 17 Skin 0.03 protein_coding synonymous_variant LOW 801G>A Arg267Arg
M0083431 CMEGEGAK_00014 12234 17 Skin 0.03 protein_coding synonymous_variant LOW 792T>C Pro264Pro
M0083432 CMEGEGAK_00014 12285 16 Skin 0.03 protein_coding synonymous_variant LOW 741T>C Tyr247Tyr
M0083433 CMEGEGAK_00014 12312 15 Skin 0.03 protein_coding synonymous_variant LOW 714G>A Ser238Ser
M0083434 CMEGEGAK_00014 12321 15 Skin 0.03 protein_coding synonymous_variant LOW 705T>C Asp235Asp
M0083435 CMEGEGAK_00014 12353 19 Skin 0.04 protein_coding synonymous_variant LOW 673T>C Leu225Leu
M0083436 CMEGEGAK_00014 12372 15 Skin 0.03 protein_coding missense_variant MODERATE 654G>A Met218Ile
M0083437 CMEGEGAK_00016 14732 14 Skin 0.03 protein_coding missense_variant MODERATE 149A>G Asp50Gly
M0083438 CMEGEGAK_00016 15291 16 Skin 0.03 protein_coding synonymous_variant LOW 708C>T Ala236Ala
M0083439 CMEGEGAK_00017 15736 16 Skin 0.03 protein_coding missense_variant MODERATE 8A>G Glu3Gly
M0083440 CMEGEGAK_00017 15748 16 Skin 0.03 protein_coding missense_variant MODERATE 20G>A Arg7His
M0083441 CMEGEGAK_00017 15806 13 Skin 0.02 protein_coding synonymous_variant LOW 78C>T Ser26Ser
M0083442 CMEGEGAK_00018 17440 9 Skin 0.02 protein_coding synonymous_variant LOW 675C>T Leu225Leu
M0083443 CMEGEGAK_00018 17593 6 Skin 0.01 protein_coding synonymous_variant LOW 828C>T Leu276Leu
M0083444 CMEGEGAK_00013 11257 9 Skin 0.02 protein_coding missense_variant MODERATE 175G>C Val59Leu
M0083445 CMEGEGAK_00014 12122 6 Skin 0.01 protein_coding missense_variant MODERATE 904G>A Gly302Ser
M0083446 CMEGEGAK_00002 2955 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -981T>C None
M0083447 CMEGEGAK_00002 2957 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -983C>T None
M0083448 CMEGEGAK_00002 2986 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -1012C>T None
M0083449 CMEGEGAK_00002 3020 11 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -1046T>C None
M0083450 CMEGEGAK_00012 10044 6 Skin 0.01 protein_coding missense_variant MODERATE 105A>C Glu35Asp
M0083451 CMEGEGAK_00012 10053 6 Skin 0.01 protein_coding synonymous_variant LOW 96G>A Lys32Lys
M0083452 CMEGEGAK_00012 10062 6 Skin 0.01 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0083453 CMEGEGAK_00012 10065 6 Skin 0.01 protein_coding synonymous_variant LOW 84T>C Asp28Asp
M0083454 CMEGEGAK_00012 10068 6 Skin 0.01 protein_coding synonymous_variant LOW 81C>T Tyr27Tyr
M0083455 CMEGEGAK_00012 10089 6 Skin 0.01 protein_coding synonymous_variant LOW 60C>T Ser20Ser
M0083456 CMEGEGAK_00012 10095 6 Skin 0.01 protein_coding synonymous_variant LOW 54C>G Gly18Gly
M0083457 CMEGEGAK_00012 10106 6 Skin 0.01 protein_coding synonymous_variant LOW 43C>T Leu15Leu
M0083458 CMEGEGAK_00012 10110 6 Skin 0.01 protein_coding synonymous_variant LOW 39A>G Pro13Pro
M0083459 CMEGEGAK_00012 10142 6 Skin 0.01 protein_coding missense_variant MODERATE 7A>G Thr3Ala
M0083460 CMEGEGAK_00006 10154 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3504G>A None
M0083461 CMEGEGAK_00006 10180 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3530G>A None
M0083462 CMEGEGAK_00006 10187 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3537A>G None
M0083463 CMEGEGAK_00006 10188 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3538G>A None
M0083464 CMEGEGAK_00006 10304 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3654G>A None
M0083465 CMEGEGAK_00005 5864 6 Skin 0.01 protein_coding synonymous_variant LOW 720A>C Gly240Gly
M0083466 CMEGEGAK_00012 10122 12 Skin 0.02 protein_coding synonymous_variant LOW 27C>T Val9Val
M0083467 CMEGEGAK_00001 99 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -610G>T None
M0083468 CMEGEGAK_00001 150 8 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -559T>C None
M0083469 CMEGEGAK_00001 217 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -492C>T None
M0083470 CMEGEGAK_00001 234 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -475A>G None
M0083471 CMEGEGAK_00001 306 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -403T>C None
M0083472 CMEGEGAK_00001 339 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -370A>G None
M0083473 CMEGEGAK_00001 347 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -362G>A None
M0083474 CMEGEGAK_00001 356 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -353T>C None
M0083475 CMEGEGAK_00001 359 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -350C>A None
M0083476 CMEGEGAK_00001 366 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -343C>T None
M0083477 CMEGEGAK_00001 384 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -325A>G None
M0083478 CMEGEGAK_00001 423 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -286G>A None
M0083479 CMEGEGAK_00001 426 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -283G>A None
M0083480 CMEGEGAK_00001 435 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -274T>A None
M0083481 CMEGEGAK_00001 463 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -246T>C None
M0083482 CMEGEGAK_00001 469 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -240G>A None
M0083483 CMEGEGAK_00001 750 9 Skin 0.02 protein_coding synonymous_variant LOW 42T>C Leu14Leu
M0083484 CMEGEGAK_00001 756 9 Skin 0.02 protein_coding missense_variant MODERATE 48A>C Leu16Phe
M0083485 CMEGEGAK_00001 760 9 Skin 0.02 protein_coding missense_variant MODERATE 52A>G Thr18Ala
M0083486 CMEGEGAK_00001 762 9 Skin 0.02 protein_coding synonymous_variant LOW 54C>G Thr18Thr
M0083487 CMEGEGAK_00001 793 7 Skin 0.01 protein_coding missense_variant MODERATE 85G>T Val29Phe
M0083488 CMEGEGAK_00001 800 7 Skin 0.01 protein_coding missense_variant MODERATE 92G>A Arg31His
M0083489 CMEGEGAK_00001 826 7 Skin 0.01 protein_coding missense_variant MODERATE 118G>A Val40Ile
M0083490 CMEGEGAK_00001 849 8 Skin 0.02 protein_coding synonymous_variant LOW 141G>C Ser47Ser
M0083491 CMEGEGAK_00001 884 7 Skin 0.01 protein_coding missense_variant MODERATE 176C>G Ser59Cys
M0083492 CMEGEGAK_00001 955 6 Skin 0.01 protein_coding synonymous_variant LOW 247T>C Leu83Leu
M0083493 CMEGEGAK_00002 1297 6 Skin 0.01 protein_coding synonymous_variant LOW 678A>G Ala226Ala
M0083494 CMEGEGAK_00008 7018 12 Skin 0.02 protein_coding synonymous_variant LOW 45A>G Lys15Lys
M0083495 CMEGEGAK_00006 6429 18 Skin 0.03 protein_coding missense_variant MODERATE 222C>A His74Gln
M0083496 CMEGEGAK_00002 4843 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -2869A>G None
M0083497 CMEGEGAK_00003 2323 6 Skin 0.01 protein_coding missense_variant MODERATE 80C>T Pro27Leu
M0083498 CMEGEGAK_00002 4699 13 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -2725G>A None
M0083499 CMEGEGAK_00002 2104 6 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -130C>T None
M0083500 CMEGEGAK_00013 11143 8 Skin 0.02 protein_coding missense_variant MODERATE 289G>A Val97Met
M0083501 CMEGEGAK_00004 4218 10 Skin 0.02 protein_coding missense_variant MODERATE 334G>A Val112Ile
M0083502 CMEGEGAK_00004 4306 9 Skin 0.02 protein_coding synonymous_variant LOW 246T>C Gly82Gly
M0083503 CMEGEGAK_00002 4933 12 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -2959C>T None
M0083504 CMEGEGAK_00013 10549 9 Skin 0.02 protein_coding missense_variant MODERATE 883T>A Phe295Ile
M0083505 CMEGEGAK_00002 2798 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -824A>G None
M0083506 CMEGEGAK_00013 11302 6 Skin 0.01 protein_coding missense_variant MODERATE 130T>C Ser44Pro
M0083507 CMEGEGAK_00013 11320 6 Skin 0.01 protein_coding missense_variant MODERATE 112T>C Phe38Leu
M0083508 CMEGEGAK_00013 11367 7 Skin 0.01 protein_coding missense_variant MODERATE 65T>C Leu22Pro
M0083509 CMEGEGAK_00006 11447 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -4797T>C None
M0083510 CMEGEGAK_00006 11448 7 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -4798A>G None
M0083511 CMEGEGAK_00004 4389 6 Skin 0.01 protein_coding missense_variant MODERATE 163G>A Ala55Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CMEGEGAK_00004 AYZ25953.1|GH5 100 0 1 500 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CMEGEGAK_00002 1.C.70.1.6 99.6 4.8e-143 1 271 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.70 The Streptococcal Pore-forming CAMP Factor (CAMP-F) Family