Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3285
  Reference Plasmid   MET0776_bin.8__k81_45974
  Reference Plasmid Size   20681
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0083805 LJJBOEHF_00010 6241 7 Skin 0.35 protein_coding synonymous_variant LOW 435T>G Leu145Leu
M0083806 LJJBOEHF_00010 6268 5 Skin 0.25 protein_coding synonymous_variant LOW 462C>T Ile154Ile
M0083807 LJJBOEHF_00010 6286 6 Skin 0.30 protein_coding synonymous_variant LOW 480C>G Ala160Ala
M0083808 LJJBOEHF_00010 6289 7 Skin 0.35 protein_coding synonymous_variant LOW 483T>C Ala161Ala
M0083809 LJJBOEHF_00010 6357 5 Skin 0.25 protein_coding missense_variant MODERATE 551C>G Ala184Gly
M0083810 LJJBOEHF_00010 6367 7 Skin 0.35 protein_coding synonymous_variant LOW 561G>C Pro187Pro
M0083811 LJJBOEHF_00010 6406 5 Skin 0.25 protein_coding synonymous_variant LOW 600G>A Ala200Ala
M0083812 LJJBOEHF_00010 6409 8 Skin 0.40 protein_coding synonymous_variant LOW 603A>C Gly201Gly
M0083813 LJJBOEHF_00010 6410 7 Skin 0.35 protein_coding missense_variant MODERATE 604C>T Pro202Ser
M0083814 LJJBOEHF_00010 6414 7 Skin 0.35 protein_coding missense_variant MODERATE 608A>C Asp203Ala
M0083815 LJJBOEHF_00010 6415 7 Skin 0.35 protein_coding synonymous_variant LOW 609C>T Asp203Asp
M0083816 LJJBOEHF_00010 6418 7 Skin 0.35 protein_coding synonymous_variant LOW 612C>G Gly204Gly
M0083817 LJJBOEHF_00010 6496 7 Skin 0.35 protein_coding synonymous_variant LOW 690C>T Asn230Asn
M0083818 LJJBOEHF_00010 6523 5 Skin 0.25 protein_coding synonymous_variant LOW 717C>G Ala239Ala
M0083819 LJJBOEHF_00010 6526 5 Skin 0.25 protein_coding synonymous_variant LOW 720C>T Thr240Thr
M0083820 LJJBOEHF_00010 6532 5 Skin 0.25 protein_coding synonymous_variant LOW 726C>G Val242Val
M0083821 LJJBOEHF_00010 6618 4 Skin 0.20 protein_coding missense_variant MODERATE 812A>T Asp271Val
M0083822 LJJBOEHF_00010 6655 7 Skin 0.35 protein_coding synonymous_variant LOW 849A>G Glu283Glu
M0083823 LJJBOEHF_00010 6656 7 Skin 0.35 protein_coding missense_variant MODERATE 850C>T Leu284Phe
M0083824 LJJBOEHF_00010 6685 4 Skin 0.20 protein_coding synonymous_variant LOW 879C>A Pro293Pro
M0083825 LJJBOEHF_00010 6687 7 Skin 0.35 protein_coding missense_variant MODERATE 881A>G Glu294Gly
M0083826 LJJBOEHF_00010 6775 4 Skin 0.20 protein_coding synonymous_variant LOW 969C>T Ile323Ile
M0083827 LJJBOEHF_00010 6830 6 Skin 0.30 protein_coding missense_variant MODERATE 1024A>G Arg342Gly
M0083828 LJJBOEHF_00010 6848 4 Skin 0.20 protein_coding missense_variant MODERATE 1042T>A Leu348Met
M0083829 LJJBOEHF_00010 6850 4 Skin 0.20 protein_coding missense_variant MODERATE 1044G>C Leu348Phe
M0083830 LJJBOEHF_00010 6853 4 Skin 0.20 protein_coding synonymous_variant LOW 1047G>A Ala349Ala
M0083831 LJJBOEHF_00010 6856 4 Skin 0.20 protein_coding synonymous_variant LOW 1050C>G Leu350Leu
M0083832 LJJBOEHF_00010 6914 5 Skin 0.25 protein_coding missense_variant MODERATE 1108A>G Thr370Ala
M0083833 LJJBOEHF_00010 6923 5 Skin 0.25 protein_coding missense_variant MODERATE 1117A>G Ile373Val
M0083834 LJJBOEHF_00010 7029 5 Skin 0.25 protein_coding missense_variant MODERATE 1223A>G Asp408Gly
M0083835 LJJBOEHF_00010 7038 5 Skin 0.25 protein_coding missense_variant MODERATE 1232T>C Val411Ala
M0083836 LJJBOEHF_00010 7072 5 Skin 0.25 protein_coding synonymous_variant LOW 1266T>C Gly422Gly
M0083837 LJJBOEHF_00010 7101 5 Skin 0.25 protein_coding missense_variant MODERATE 1295T>A Ile432Asn
M0083838 LJJBOEHF_00010 7104 5 Skin 0.25 protein_coding missense_variant MODERATE 1298G>C Gly433Ala
M0083839 LJJBOEHF_00010 7129 4 Skin 0.20 protein_coding synonymous_variant LOW 1323C>G Ala441Ala
M0083840 LJJBOEHF_00010 7134 4 Skin 0.20 protein_coding missense_variant MODERATE 1328C>G Thr443Ser
M0083841 LJJBOEHF_00010 7135 5 Skin 0.25 protein_coding synonymous_variant LOW 1329T>C Thr443Thr
M0083842 LJJBOEHF_00010 7201 4 Skin 0.20 protein_coding synonymous_variant LOW 1395G>C Leu465Leu
M0083843 LJJBOEHF_00010 7210 5 Skin 0.25 protein_coding synonymous_variant LOW 1404A>C Arg468Arg
M0083844 LJJBOEHF_00010 7273 5 Skin 0.25 protein_coding synonymous_variant LOW 1467A>C Pro489Pro
M0083845 LJJBOEHF_00011 7463 5 Skin 0.25 protein_coding missense_variant MODERATE 159A>G Ile53Met
M0083846 LJJBOEHF_00011 7488 5 Skin 0.25 protein_coding missense_variant MODERATE 184T>C Ser62Pro
M0083847 LJJBOEHF_00011 7613 5 Skin 0.25 protein_coding synonymous_variant LOW 309T>C Phe103Phe
M0083848 LJJBOEHF_00011 7647 4 Skin 0.20 protein_coding missense_variant MODERATE 343C>G Arg115Gly
M0083849 LJJBOEHF_00011 7661 6 Skin 0.30 protein_coding synonymous_variant LOW 357T>G Leu119Leu
M0083850 LJJBOEHF_00011 7693 4 Skin 0.20 protein_coding missense_variant MODERATE 389T>C Val130Ala
M0083851 LJJBOEHF_00011 7730 3 Skin 0.15 protein_coding synonymous_variant LOW 426G>A Glu142Glu
M0083852 LJJBOEHF_00011 7783 5 Skin 0.25 protein_coding missense_variant MODERATE 479G>C Gly160Ala
M0083853 LJJBOEHF_00011 7823 3 Skin 0.15 protein_coding synonymous_variant LOW 519C>T Gly173Gly
M0083854 LJJBOEHF_00011 7826 3 Skin 0.15 protein_coding synonymous_variant LOW 522G>A Gly174Gly
M0083855 LJJBOEHF_00011 7841 6 Skin 0.30 protein_coding synonymous_variant LOW 537T>C Tyr179Tyr
M0083856 LJJBOEHF_00011 7844 6 Skin 0.30 protein_coding synonymous_variant LOW 540G>C Leu180Leu
M0083857 LJJBOEHF_00011 7847 6 Skin 0.30 protein_coding synonymous_variant LOW 543A>G Glu181Glu
M0083858 LJJBOEHF_00011 7850 4 Skin 0.20 protein_coding synonymous_variant LOW 546C>G Gly182Gly
M0083859 LJJBOEHF_00011 7988 4 Skin 0.20 protein_coding synonymous_variant LOW 684G>C Arg228Arg
M0083860 LJJBOEHF_00011 7991 6 Skin 0.30 protein_coding missense_variant MODERATE 687C>G Ile229Met
M0083861 LJJBOEHF_00011 8054 4 Skin 0.20 protein_coding synonymous_variant LOW 750T>C Ala250Ala
M0083862 LJJBOEHF_00011 8186 3 Skin 0.15 protein_coding synonymous_variant LOW 882C>T Val294Val
M0083863 LJJBOEHF_00011 8261 6 Skin 0.30 protein_coding synonymous_variant LOW 957T>C His319His
M0083864 LJJBOEHF_00011 8378 3 Skin 0.15 protein_coding synonymous_variant LOW 1074C>A Ala358Ala
M0083865 LJJBOEHF_00011 8444 3 Skin 0.15 protein_coding synonymous_variant LOW 1140T>C Asn380Asn
M0083866 LJJBOEHF_00011 8445 3 Skin 0.15 protein_coding synonymous_variant LOW 1141T>C Leu381Leu
M0083867 LJJBOEHF_00011 8468 5 Skin 0.25 protein_coding synonymous_variant LOW 1164A>G Thr388Thr
M0083868 LJJBOEHF_00011 8627 4 Skin 0.20 protein_coding synonymous_variant LOW 1323G>C Pro441Pro
M0083869 LJJBOEHF_00011 8630 4 Skin 0.20 protein_coding synonymous_variant LOW 1326C>G Val442Val
M0083870 LJJBOEHF_00011 8687 3 Skin 0.15 protein_coding synonymous_variant LOW 1383C>T His461His
M0083871 LJJBOEHF_00011 8699 5 Skin 0.25 protein_coding synonymous_variant LOW 1395T>C Asp465Asp
M0083872 LJJBOEHF_00011 8748 5 Skin 0.25 protein_coding missense_variant MODERATE 1444T>C Tyr482His
M0083873 LJJBOEHF_00011 8990 3 Skin 0.15 protein_coding synonymous_variant LOW 1686C>G Val562Val
M0083874 LJJBOEHF_00011 8993 3 Skin 0.15 protein_coding missense_variant MODERATE 1689C>G Ile563Met
M0083875 LJJBOEHF_00011 9047 4 Skin 0.20 protein_coding synonymous_variant LOW 1743G>C Ala581Ala
M0083876 LJJBOEHF_00011 9170 3 Skin 0.15 protein_coding synonymous_variant LOW 1866G>T Val622Val
M0083877 LJJBOEHF_00011 9179 3 Skin 0.15 protein_coding synonymous_variant LOW 1875C>G Leu625Leu
M0083878 LJJBOEHF_00011 9203 4 Skin 0.20 protein_coding synonymous_variant LOW 1899A>G Arg633Arg
M0083879 LJJBOEHF_00011 9229 3 Skin 0.15 protein_coding missense_variant MODERATE 1925G>A Arg642His
M0083880 LJJBOEHF_00011 9230 4 Skin 0.20 protein_coding synonymous_variant LOW 1926C>G Arg642Arg
M0083881 LJJBOEHF_00011 9239 4 Skin 0.20 protein_coding synonymous_variant LOW 1935C>T Asn645Asn
M0083882 LJJBOEHF_00011 9242 4 Skin 0.20 protein_coding synonymous_variant LOW 1938C>G Pro646Pro
M0083883 LJJBOEHF_00011 9302 4 Skin 0.20 protein_coding synonymous_variant LOW 1998T>C Ser666Ser
M0083884 LJJBOEHF_00011 9413 4 Skin 0.20 protein_coding missense_variant MODERATE 2109A>C Glu703Asp
M0083885 LJJBOEHF_00011 9437 3 Skin 0.15 protein_coding synonymous_variant LOW 2133C>G Thr711Thr
M0083886 LJJBOEHF_00011 9554 3 Skin 0.15 protein_coding synonymous_variant LOW 2250T>C Asp750Asp
M0083887 LJJBOEHF_00011 9557 3 Skin 0.15 protein_coding synonymous_variant LOW 2253G>C Ala751Ala
M0083888 LJJBOEHF_00011 9608 3 Skin 0.15 protein_coding missense_variant MODERATE 2304C>A Asp768Glu
M0083889 LJJBOEHF_00011 9609 3 Skin 0.15 protein_coding missense_variant MODERATE 2305G>A Gly769Ser
M0083890 LJJBOEHF_00012 9639 4 Skin 0.20 protein_coding missense_variant MODERATE 23T>C Val8Ala
M0083891 LJJBOEHF_00006 2567 4 Skin 0.20 protein_coding missense_variant MODERATE 377C>T Ala126Val
M0083892 LJJBOEHF_00006 2866 4 Skin 0.20 protein_coding synonymous_variant LOW 78G>A Glu26Glu
M0083893 LJJBOEHF_00006 2869 8 Skin 0.40 protein_coding synonymous_variant LOW 75A>C Gly25Gly
M0083894 LJJBOEHF_00006 2898 8 Skin 0.40 protein_coding synonymous_variant LOW 46T>C Leu16Leu
M0083895 LJJBOEHF_00002 2948 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1937C>A None
M0083896 LJJBOEHF_00002 2949 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1938C>A None
M0083897 LJJBOEHF_00002 3036 8 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -2025C>G None
M0083898 LJJBOEHF_00007 3140 3 Skin 0.15 protein_coding synonymous_variant LOW 36T>C Thr12Thr
M0083899 LJJBOEHF_00007 3303 5 Skin 0.25 protein_coding synonymous_variant LOW 199T>C Leu67Leu
M0083900 LJJBOEHF_00007 3314 5 Skin 0.25 protein_coding synonymous_variant LOW 210C>T His70His
M0083901 LJJBOEHF_00007 3350 5 Skin 0.25 protein_coding synonymous_variant LOW 246A>C Ala82Ala
M0083902 LJJBOEHF_00008 3539 3 Skin 0.15 protein_coding synonymous_variant LOW 69C>T Ile23Ile
M0083903 LJJBOEHF_00008 3557 4 Skin 0.20 protein_coding synonymous_variant LOW 87C>T Ser29Ser
M0083904 LJJBOEHF_00008 3653 5 Skin 0.25 protein_coding synonymous_variant LOW 183C>T Phe61Phe
M0083905 LJJBOEHF_00008 3761 6 Skin 0.30 protein_coding synonymous_variant LOW 291A>G Ala97Ala
M0083906 LJJBOEHF_00008 3767 5 Skin 0.25 protein_coding synonymous_variant LOW 297C>G Leu99Leu
M0083907 LJJBOEHF_00008 3899 4 Skin 0.20 protein_coding synonymous_variant LOW 429C>G Pro143Pro
M0083908 LJJBOEHF_00008 3907 6 Skin 0.30 protein_coding missense_variant MODERATE 437G>A Gly146Glu
M0083909 LJJBOEHF_00008 3923 3 Skin 0.15 protein_coding synonymous_variant LOW 453G>A Leu151Leu
M0083910 LJJBOEHF_00008 3930 4 Skin 0.20 protein_coding synonymous_variant LOW 460C>T Leu154Leu
M0083911 LJJBOEHF_00008 4112 6 Skin 0.30 protein_coding synonymous_variant LOW 642C>G Pro214Pro
M0083912 LJJBOEHF_00008 4163 5 Skin 0.25 protein_coding synonymous_variant LOW 693C>G Thr231Thr
M0083913 LJJBOEHF_00008 4292 7 Skin 0.35 protein_coding synonymous_variant LOW 822T>C His274His
M0083914 LJJBOEHF_00008 4329 8 Skin 0.40 protein_coding missense_variant MODERATE 859G>A Ala287Thr
M0083915 LJJBOEHF_00008 4356 8 Skin 0.40 protein_coding missense_variant MODERATE 886G>T Gly296Trp
M0083916 LJJBOEHF_00008 4359 8 Skin 0.40 protein_coding synonymous_variant LOW 889T>C Leu297Leu
M0083917 LJJBOEHF_00008 4390 6 Skin 0.30 protein_coding missense_variant MODERATE 920A>C Glu307Ala
M0083918 LJJBOEHF_00008 4407 6 Skin 0.30 protein_coding missense_variant MODERATE 937A>C Thr313Pro
M0083919 LJJBOEHF_00008 4412 8 Skin 0.40 protein_coding synonymous_variant LOW 942C>G Ala314Ala
M0083920 LJJBOEHF_00008 4421 7 Skin 0.35 protein_coding synonymous_variant LOW 951G>C Arg317Arg
M0083921 LJJBOEHF_00008 4424 8 Skin 0.40 protein_coding synonymous_variant LOW 954A>G Leu318Leu
M0083922 LJJBOEHF_00008 4547 7 Skin 0.35 protein_coding synonymous_variant LOW 1077C>T Thr359Thr
M0083923 LJJBOEHF_00008 4559 8 Skin 0.40 protein_coding synonymous_variant LOW 1089T>C Ile363Ile
M0083924 LJJBOEHF_00008 4613 5 Skin 0.25 protein_coding synonymous_variant LOW 1143G>C Pro381Pro
M0083925 LJJBOEHF_00009 4822 4 Skin 0.20 protein_coding missense_variant MODERATE 839C>T Pro280Leu
M0083926 LJJBOEHF_00009 4870 7 Skin 0.35 protein_coding missense_variant MODERATE 791C>T Thr264Met
M0083927 LJJBOEHF_00009 4923 4 Skin 0.20 protein_coding synonymous_variant LOW 738C>A Ala246Ala
M0083928 LJJBOEHF_00009 4932 3 Skin 0.15 protein_coding synonymous_variant LOW 729C>T Tyr243Tyr
M0083929 LJJBOEHF_00009 4956 4 Skin 0.20 protein_coding synonymous_variant LOW 705C>G Ala235Ala
M0083930 LJJBOEHF_00009 5124 4 Skin 0.20 protein_coding synonymous_variant LOW 537T>A Leu179Leu
M0083931 LJJBOEHF_00009 5125 4 Skin 0.20 protein_coding missense_variant MODERATE 536T>A Leu179His
M0083932 LJJBOEHF_00009 5154 6 Skin 0.30 protein_coding synonymous_variant LOW 507G>C Pro169Pro
M0083933 LJJBOEHF_00009 5160 6 Skin 0.30 protein_coding synonymous_variant LOW 501A>C Ala167Ala
M0083934 LJJBOEHF_00009 5247 5 Skin 0.25 protein_coding synonymous_variant LOW 414C>G Gly138Gly
M0083935 LJJBOEHF_00009 5289 5 Skin 0.25 protein_coding synonymous_variant LOW 372A>C Arg124Arg
M0083936 LJJBOEHF_00009 5356 6 Skin 0.30 protein_coding missense_variant MODERATE 305T>C Val102Ala
M0083937 LJJBOEHF_00009 5370 3 Skin 0.15 protein_coding synonymous_variant LOW 291C>A Ala97Ala
M0083938 LJJBOEHF_00009 5378 6 Skin 0.30 protein_coding synonymous_variant LOW 283C>A Arg95Arg
M0083939 LJJBOEHF_00009 5394 6 Skin 0.30 protein_coding synonymous_variant LOW 267A>C Thr89Thr
M0083940 LJJBOEHF_00009 5406 3 Skin 0.15 protein_coding synonymous_variant LOW 255G>C Ala85Ala
M0083941 LJJBOEHF_00009 5427 3 Skin 0.15 protein_coding missense_variant MODERATE 234G>T Glu78Asp
M0083942 LJJBOEHF_00009 5565 6 Skin 0.30 protein_coding synonymous_variant LOW 96C>G Ala32Ala
M0083943 LJJBOEHF_00009 5627 5 Skin 0.25 protein_coding synonymous_variant LOW 34A>C Arg12Arg
M0083944 LJJBOEHF_00002 5790 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4779G>A None
M0083945 LJJBOEHF_00010 5815 4 Skin 0.20 protein_coding synonymous_variant LOW 9T>C Asp3Asp
M0083946 LJJBOEHF_00010 5902 6 Skin 0.30 protein_coding synonymous_variant LOW 96G>C Leu32Leu
M0083947 LJJBOEHF_00010 5905 7 Skin 0.35 protein_coding synonymous_variant LOW 99T>C Gly33Gly
M0083948 LJJBOEHF_00010 5908 7 Skin 0.35 protein_coding synonymous_variant LOW 102T>C Arg34Arg
M0083949 LJJBOEHF_00010 5966 7 Skin 0.35 protein_coding missense_variant MODERATE 160G>C Val54Leu
M0083950 LJJBOEHF_00010 5974 4 Skin 0.20 protein_coding synonymous_variant LOW 168G>C Gly56Gly
M0083951 LJJBOEHF_00010 5983 7 Skin 0.35 protein_coding synonymous_variant LOW 177T>C His59His
M0083952 LJJBOEHF_00010 5985 7 Skin 0.35 protein_coding missense_variant MODERATE 179A>G Asp60Gly
M0083953 LJJBOEHF_00010 5998 7 Skin 0.35 protein_coding synonymous_variant LOW 192G>C Val64Val
M0083954 LJJBOEHF_00010 6001 7 Skin 0.35 protein_coding synonymous_variant LOW 195T>C Tyr65Tyr
M0083955 LJJBOEHF_00010 6028 8 Skin 0.40 protein_coding synonymous_variant LOW 222T>C Phe74Phe
M0083956 LJJBOEHF_00010 6076 6 Skin 0.30 protein_coding synonymous_variant LOW 270G>A Lys90Lys
M0083957 LJJBOEHF_00010 6109 8 Skin 0.40 protein_coding synonymous_variant LOW 303G>C Arg101Arg
M0083958 LJJBOEHF_00010 6142 5 Skin 0.25 protein_coding synonymous_variant LOW 336C>T Gly112Gly
M0083959 LJJBOEHF_00010 6148 5 Skin 0.25 protein_coding synonymous_variant LOW 342C>T Cys114Cys
M0083960 LJJBOEHF_00010 6175 5 Skin 0.25 protein_coding synonymous_variant LOW 369T>C Tyr123Tyr
M0083961 LJJBOEHF_00010 6202 5 Skin 0.25 protein_coding synonymous_variant LOW 396C>T Pro132Pro
M0083962 LJJBOEHF_00010 6207 4 Skin 0.20 protein_coding missense_variant MODERATE 401T>C Val134Ala
M0083963 LJJBOEHF_00010 6211 6 Skin 0.30 protein_coding synonymous_variant LOW 405T>G Val135Val
M0083964 LJJBOEHF_00013 10877 4 Skin 0.20 protein_coding missense_variant MODERATE 542T>G Leu181Arg
M0083965 LJJBOEHF_00013 10878 4 Skin 0.20 protein_coding synonymous_variant LOW 543C>G Leu181Leu
M0083966 LJJBOEHF_00013 10889 4 Skin 0.20 protein_coding missense_variant MODERATE 554C>A Ala185Glu
M0083967 LJJBOEHF_00013 10890 4 Skin 0.20 protein_coding synonymous_variant LOW 555G>C Ala185Ala
M0083968 LJJBOEHF_00013 10908 4 Skin 0.20 protein_coding synonymous_variant LOW 573G>C Gly191Gly
M0083969 LJJBOEHF_00013 10956 4 Skin 0.20 protein_coding synonymous_variant LOW 621T>C Pro207Pro
M0083970 LJJBOEHF_00013 10986 3 Skin 0.15 protein_coding synonymous_variant LOW 651C>G Ala217Ala
M0083971 LJJBOEHF_00013 11008 3 Skin 0.15 protein_coding missense_variant MODERATE 673A>G Ile225Val
M0083972 LJJBOEHF_00013 11059 3 Skin 0.15 protein_coding missense_variant MODERATE 724A>C Met242Leu
M0083973 LJJBOEHF_00013 11250 3 Skin 0.15 protein_coding synonymous_variant LOW 915G>C Gly305Gly
M0083974 LJJBOEHF_00013 11267 3 Skin 0.15 protein_coding missense_variant MODERATE 932G>T Gly311Val
M0083975 LJJBOEHF_00013 11298 3 Skin 0.15 protein_coding synonymous_variant LOW 963T>C Gly321Gly
M0083976 LJJBOEHF_00013 11391 3 Skin 0.15 protein_coding synonymous_variant LOW 1056T>C His352His
M0083977 LJJBOEHF_00013 11418 3 Skin 0.15 protein_coding synonymous_variant LOW 1083C>G Ala361Ala
M0083978 LJJBOEHF_00013 11586 3 Skin 0.15 protein_coding synonymous_variant LOW 1251C>G Ala417Ala
M0083979 LJJBOEHF_00013 11592 3 Skin 0.15 protein_coding synonymous_variant LOW 1257C>T Thr419Thr
M0083980 LJJBOEHF_00013 11600 3 Skin 0.15 protein_coding missense_variant MODERATE 1265C>G Ala422Gly
M0083981 LJJBOEHF_00014 11709 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -49A>T None
M0083982 LJJBOEHF_00014 11712 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -46C>T None
M0083983 LJJBOEHF_00014 11723 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -35C>G None
M0083984 LJJBOEHF_00014 11745 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -13A>C None
M0083985 LJJBOEHF_00014 11762 3 Skin 0.15 protein_coding missense_variant MODERATE 5C>A Ser2Tyr
M0083986 LJJBOEHF_00014 11768 3 Skin 0.15 protein_coding missense_variant MODERATE 11C>A Pro4Gln
M0083987 LJJBOEHF_00014 11787 3 Skin 0.15 protein_coding synonymous_variant LOW 30C>T Arg10Arg
M0083988 LJJBOEHF_00014 11820 3 Skin 0.15 protein_coding synonymous_variant LOW 63C>G Ala21Ala
M0083989 LJJBOEHF_00014 11943 3 Skin 0.15 protein_coding synonymous_variant LOW 186G>C Val62Val
M0083990 LJJBOEHF_00014 12048 3 Skin 0.15 protein_coding synonymous_variant LOW 291A>G Ala97Ala
M0083991 LJJBOEHF_00014 12264 3 Skin 0.15 protein_coding synonymous_variant LOW 507G>C Pro169Pro
M0083992 LJJBOEHF_00014 12930 3 Skin 0.15 protein_coding synonymous_variant LOW 1173T>G Leu391Leu
M0083993 LJJBOEHF_00014 13086 3 Skin 0.15 protein_coding synonymous_variant LOW 1329C>G Val443Val
M0083994 LJJBOEHF_00014 13116 3 Skin 0.15 protein_coding synonymous_variant LOW 1359G>C Pro453Pro
M0083995 LJJBOEHF_00014 13182 3 Skin 0.15 protein_coding synonymous_variant LOW 1425C>A Gly475Gly
M0083996 LJJBOEHF_00015 13312 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -139C>G None
M0083997 LJJBOEHF_00015 13385 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -66T>C None
M0083998 LJJBOEHF_00015 13397 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -54A>C None
M0083999 LJJBOEHF_00015 13407 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -44C>T None
M0084000 LJJBOEHF_00015 13420 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -31C>T None
M0084001 LJJBOEHF_00015 13714 3 Skin 0.15 protein_coding synonymous_variant LOW 264G>T Val88Val
M0084002 LJJBOEHF_00015 13808 3 Skin 0.15 protein_coding synonymous_variant LOW 358T>C Leu120Leu
M0084003 LJJBOEHF_00015 13939 3 Skin 0.15 protein_coding synonymous_variant LOW 489G>C Gly163Gly
M0084004 LJJBOEHF_00015 13949 3 Skin 0.15 protein_coding missense_variant MODERATE 499A>G Met167Val
M0084005 LJJBOEHF_00015 13966 3 Skin 0.15 protein_coding synonymous_variant LOW 516G>A Gly172Gly
M0084006 LJJBOEHF_00015 14011 3 Skin 0.15 protein_coding synonymous_variant LOW 561G>T Arg187Arg
M0084007 LJJBOEHF_00015 14055 3 Skin 0.15 protein_coding missense_variant MODERATE 605G>A Gly202Glu
M0084008 LJJBOEHF_00016 14226 3 Skin 0.15 protein_coding synonymous_variant LOW 81C>T Tyr27Tyr
M0084009 LJJBOEHF_00016 14238 3 Skin 0.15 protein_coding synonymous_variant LOW 93G>A Gly31Gly
M0084010 LJJBOEHF_00016 14361 3 Skin 0.15 protein_coding synonymous_variant LOW 216C>G Ala72Ala
M0084011 LJJBOEHF_00016 14451 3 Skin 0.15 protein_coding synonymous_variant LOW 306G>C Pro102Pro
M0084012 LJJBOEHF_00016 14469 3 Skin 0.15 protein_coding synonymous_variant LOW 324C>G Leu108Leu
M0084013 LJJBOEHF_00016 14535 3 Skin 0.15 protein_coding synonymous_variant LOW 390G>C Ala130Ala
M0084014 LJJBOEHF_00016 14582 3 Skin 0.15 protein_coding missense_variant MODERATE 437T>C Val146Ala
M0084015 LJJBOEHF_00016 14627 3 Skin 0.15 protein_coding missense_variant MODERATE 482A>G Gln161Arg
M0084016 LJJBOEHF_00016 14685 3 Skin 0.15 protein_coding synonymous_variant LOW 540A>G Ala180Ala
M0084017 LJJBOEHF_00017 15041 3 Skin 0.15 protein_coding synonymous_variant LOW 1842C>G Arg614Arg
M0084018 LJJBOEHF_00017 15278 3 Skin 0.15 protein_coding synonymous_variant LOW 1605C>T Asn535Asn
M0084019 LJJBOEHF_00017 15293 4 Skin 0.20 protein_coding synonymous_variant LOW 1590C>T His530His
M0084020 LJJBOEHF_00017 15443 4 Skin 0.20 protein_coding synonymous_variant LOW 1440G>A Gly480Gly
M0084021 LJJBOEHF_00017 15563 4 Skin 0.20 protein_coding synonymous_variant LOW 1320G>A Pro440Pro
M0084022 LJJBOEHF_00017 15794 3 Skin 0.15 protein_coding synonymous_variant LOW 1089C>T Ile363Ile
M0084023 LJJBOEHF_00017 15913 3 Skin 0.15 protein_coding synonymous_variant LOW 970T>C Leu324Leu
M0084024 LJJBOEHF_00017 16019 3 Skin 0.15 protein_coding synonymous_variant LOW 864C>A Val288Val
M0084025 LJJBOEHF_00017 16034 5 Skin 0.25 protein_coding synonymous_variant LOW 849T>G Ser283Ser
M0084026 LJJBOEHF_00017 16049 3 Skin 0.15 protein_coding synonymous_variant LOW 834G>C Arg278Arg
M0084027 LJJBOEHF_00017 16136 5 Skin 0.25 protein_coding synonymous_variant LOW 747C>T Phe249Phe
M0084028 LJJBOEHF_00017 16161 5 Skin 0.25 protein_coding missense_variant MODERATE 722T>C Val241Ala
M0084029 LJJBOEHF_00017 16166 3 Skin 0.15 protein_coding synonymous_variant LOW 717C>G Arg239Arg
M0084030 LJJBOEHF_00017 16196 3 Skin 0.15 protein_coding synonymous_variant LOW 687C>G Ala229Ala
M0084031 LJJBOEHF_00017 16211 3 Skin 0.15 protein_coding synonymous_variant LOW 672T>C His224His
M0084032 LJJBOEHF_00017 16216 3 Skin 0.15 protein_coding synonymous_variant LOW 667C>T Leu223Leu
M0084033 LJJBOEHF_00017 16220 3 Skin 0.15 protein_coding synonymous_variant LOW 663G>C Gly221Gly
M0084034 LJJBOEHF_00017 16367 5 Skin 0.25 protein_coding synonymous_variant LOW 516T>G Val172Val
M0084035 LJJBOEHF_00017 16406 3 Skin 0.15 protein_coding synonymous_variant LOW 477A>G Ala159Ala
M0084036 LJJBOEHF_00017 16457 5 Skin 0.25 protein_coding synonymous_variant LOW 426A>C Thr142Thr
M0084037 LJJBOEHF_00017 16475 3 Skin 0.15 protein_coding synonymous_variant LOW 408G>C Ala136Ala
M0084038 LJJBOEHF_00017 16796 4 Skin 0.20 protein_coding synonymous_variant LOW 87T>A Ala29Ala
M0084039 LJJBOEHF_00017 16804 4 Skin 0.20 protein_coding missense_variant MODERATE 79T>C Ser27Pro
M0084040 LJJBOEHF_00017 16850 4 Skin 0.20 protein_coding synonymous_variant LOW 33T>C Ala11Ala
M0084041 LJJBOEHF_00018 17229 5 Skin 0.25 protein_coding synonymous_variant LOW 390A>C Ala130Ala
M0084042 LJJBOEHF_00018 17289 5 Skin 0.25 protein_coding synonymous_variant LOW 330T>C Phe110Phe
M0084043 LJJBOEHF_00019 17764 5 Skin 0.25 protein_coding missense_variant MODERATE 13T>C Tyr5His
M0084044 LJJBOEHF_00019 17861 5 Skin 0.25 protein_coding missense_variant MODERATE 110G>A Gly37Asp
M0084045 LJJBOEHF_00019 17904 5 Skin 0.25 protein_coding synonymous_variant LOW 153G>C Gly51Gly
M0084046 LJJBOEHF_00019 18297 3 Skin 0.15 protein_coding synonymous_variant LOW 546T>C His182His
M0084047 LJJBOEHF_00019 18441 6 Skin 0.30 protein_coding synonymous_variant LOW 690A>G Leu230Leu
M0084048 LJJBOEHF_00019 18540 4 Skin 0.20 protein_coding synonymous_variant LOW 789C>G Leu263Leu
M0084049 LJJBOEHF_00019 18546 4 Skin 0.20 protein_coding synonymous_variant LOW 795T>G Ser265Ser
M0084050 LJJBOEHF_00019 18564 4 Skin 0.20 protein_coding synonymous_variant LOW 813C>T His271His
M0084051 LJJBOEHF_00019 18649 5 Skin 0.25 protein_coding missense_variant MODERATE 898A>G Thr300Ala
M0084052 LJJBOEHF_00020 19085 5 Skin 0.25 protein_coding synonymous_variant LOW 12A>G Ala4Ala
M0084053 LJJBOEHF_00020 19229 5 Skin 0.25 protein_coding synonymous_variant LOW 156G>A Pro52Pro
M0084054 LJJBOEHF_00020 19244 5 Skin 0.25 protein_coding synonymous_variant LOW 171T>C Arg57Arg
M0084055 LJJBOEHF_00020 19355 4 Skin 0.20 protein_coding splice_region_variant&stop_retained_variant LOW 282G>A Ter94Ter
M0084056 LJJBOEHF_00017 19393 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2511C>T None
M0084057 LJJBOEHF_00017 19410 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2528C>A None
M0084058 LJJBOEHF_00021 19417 4 Skin 0.20 protein_coding missense_variant MODERATE 5T>C Ile2Thr
M0084059 LJJBOEHF_00021 19529 3 Skin 0.15 protein_coding synonymous_variant LOW 117C>T Asp39Asp
M0084060 LJJBOEHF_00021 19544 3 Skin 0.15 protein_coding synonymous_variant LOW 132C>G Gly44Gly
M0084061 LJJBOEHF_00021 19562 3 Skin 0.15 protein_coding synonymous_variant LOW 150C>G Ser50Ser
M0084062 LJJBOEHF_00021 19571 3 Skin 0.15 protein_coding synonymous_variant LOW 159G>A Glu53Glu
M0084063 LJJBOEHF_00021 19580 3 Skin 0.15 protein_coding synonymous_variant LOW 168C>G Gly56Gly
M0084064 LJJBOEHF_00021 19679 3 Skin 0.15 protein_coding synonymous_variant LOW 267C>T Thr89Thr
M0084065 LJJBOEHF_00021 19688 3 Skin 0.15 protein_coding synonymous_variant LOW 276G>C Thr92Thr
M0084066 LJJBOEHF_00021 19706 3 Skin 0.15 protein_coding synonymous_variant LOW 294C>G Gly98Gly
M0084067 LJJBOEHF_00021 19736 4 Skin 0.20 protein_coding synonymous_variant LOW 324C>G Val108Val
M0084068 LJJBOEHF_00021 19741 3 Skin 0.15 protein_coding missense_variant MODERATE 329G>A Arg110Gln
M0084069 LJJBOEHF_00021 19837 5 Skin 0.25 protein_coding missense_variant MODERATE 425C>G Ala142Gly
M0084070 LJJBOEHF_00021 19916 5 Skin 0.25 protein_coding synonymous_variant LOW 504T>C Asp168Asp
M0084071 LJJBOEHF_00021 20165 3 Skin 0.15 protein_coding synonymous_variant LOW 753G>C Ala251Ala
M0084072 LJJBOEHF_00021 20213 5 Skin 0.25 protein_coding synonymous_variant LOW 801T>G Val267Val
M0084073 LJJBOEHF_00021 20234 5 Skin 0.25 protein_coding synonymous_variant LOW 822C>G Pro274Pro
M0084074 LJJBOEHF_00021 20258 5 Skin 0.25 protein_coding synonymous_variant LOW 846C>A Gly282Gly
M0084075 LJJBOEHF_00021 20264 5 Skin 0.25 protein_coding synonymous_variant LOW 852A>G Ala284Ala
M0084076 LJJBOEHF_00021 20291 5 Skin 0.25 protein_coding synonymous_variant LOW 879T>C Pro293Pro
M0084077 LJJBOEHF_00021 20518 5 Skin 0.25 protein_coding missense_variant MODERATE 1106G>T Gly369Val
M0084078 LJJBOEHF_00021 20546 5 Skin 0.25 protein_coding synonymous_variant LOW 1134C>G Pro378Pro
M0084079 LJJBOEHF_00021 20585 5 Skin 0.25 protein_coding synonymous_variant LOW 1173T>C Ile391Ile
M0084080 LJJBOEHF_00021 20600 3 Skin 0.15 protein_coding synonymous_variant LOW 1188C>G Ala396Ala
M0084081 LJJBOEHF_00003 1709 3 Skin 0.15 protein_coding missense_variant MODERATE 199G>T Ala67Ser
M0084082 LJJBOEHF_00003 1711 3 Skin 0.15 protein_coding missense_variant MODERATE 197T>C Leu66Pro
M0084083 LJJBOEHF_00003 1714 3 Skin 0.15 protein_coding missense_variant MODERATE 194T>C Val65Ala
M0084084 LJJBOEHF_00003 1772 3 Skin 0.15 protein_coding missense_variant MODERATE 136C>G Leu46Val
M0084085 LJJBOEHF_00003 1778 3 Skin 0.15 protein_coding missense_variant MODERATE 130C>G Arg44Gly
M0084086 LJJBOEHF_00003 1805 4 Skin 0.20 protein_coding missense_variant MODERATE 103A>G Ser35Gly
M0084087 LJJBOEHF_00003 1837 4 Skin 0.20 protein_coding missense_variant MODERATE 71T>A Leu24Gln
M0084088 LJJBOEHF_00003 1845 5 Skin 0.25 protein_coding synonymous_variant LOW 63G>C Gly21Gly
M0084089 LJJBOEHF_00003 1888 5 Skin 0.25 protein_coding missense_variant MODERATE 20G>T Gly7Val
M0084090 LJJBOEHF_00004 1915 4 Skin 0.20 protein_coding missense_variant MODERATE 5T>C Leu2Pro
M0084091 LJJBOEHF_00004 1942 4 Skin 0.20 protein_coding missense_variant MODERATE 32C>A Pro11Gln
M0084092 LJJBOEHF_00004 1943 4 Skin 0.20 protein_coding synonymous_variant LOW 33G>T Pro11Pro
M0084093 LJJBOEHF_00004 2005 4 Skin 0.20 protein_coding missense_variant MODERATE 95C>G Pro32Arg
M0084094 LJJBOEHF_00004 2063 4 Skin 0.20 protein_coding synonymous_variant LOW 153T>C Phe51Phe
M0084095 LJJBOEHF_00004 2082 3 Skin 0.15 protein_coding missense_variant MODERATE 172T>C Phe58Leu
M0084096 LJJBOEHF_00004 2096 5 Skin 0.25 protein_coding synonymous_variant LOW 186T>C Leu62Leu
M0084097 LJJBOEHF_00004 2140 5 Skin 0.25 protein_coding missense_variant MODERATE 230T>C Leu77Pro
M0084098 LJJBOEHF_00004 2193 3 Skin 0.15 protein_coding missense_variant MODERATE 283G>A Ala95Thr
M0084099 LJJBOEHF_00004 2201 3 Skin 0.15 protein_coding synonymous_variant LOW 291G>C Gly97Gly
M0084100 LJJBOEHF_00004 2214 5 Skin 0.25 protein_coding missense_variant MODERATE 304G>C Ala102Pro
M0084101 LJJBOEHF_00002 825 3 Skin 0.15 protein_coding missense_variant MODERATE 187A>G Thr63Ala
M0084102 LJJBOEHF_00002 829 3 Skin 0.15 protein_coding synonymous_variant LOW 183A>C Ala61Ala
M0084103 LJJBOEHF_00002 891 3 Skin 0.15 protein_coding missense_variant MODERATE 121T>C Cys41Arg
M0084104 LJJBOEHF_00002 900 3 Skin 0.15 protein_coding synonymous_variant LOW 112C>T Leu38Leu
M0084105 LJJBOEHF_00002 920 3 Skin 0.15 protein_coding missense_variant MODERATE 92C>G Pro31Arg
M0084106 LJJBOEHF_00002 937 3 Skin 0.15 protein_coding synonymous_variant LOW 75G>A Pro25Pro
M0084107 LJJBOEHF_00002 977 3 Skin 0.15 protein_coding missense_variant MODERATE 35A>C Glu12Ala
M0084108 LJJBOEHF_00002 985 3 Skin 0.15 protein_coding synonymous_variant LOW 27T>C Phe9Phe
M0084109 LJJBOEHF_00002 1050 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -39C>G None
M0084110 LJJBOEHF_00002 1062 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -51C>T None
M0084111 LJJBOEHF_00002 1102 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -91G>T None
M0084112 LJJBOEHF_00002 1145 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -134C>G None
M0084113 LJJBOEHF_00002 1160 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -149G>A None
M0084114 LJJBOEHF_00002 1186 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -175C>T None
M0084115 LJJBOEHF_00002 1190 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -179G>T None
M0084116 LJJBOEHF_00002 1191 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -180C>G None
M0084117 LJJBOEHF_00002 1193 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -182A>G None
M0084118 LJJBOEHF_00002 1195 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -184C>G None
M0084119 LJJBOEHF_00002 1218 4 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -207A>C None
M0084120 LJJBOEHF_00003 1425 4 Skin 0.20 protein_coding synonymous_variant LOW 483T>C Asp161Asp
M0084121 LJJBOEHF_00003 1455 4 Skin 0.20 protein_coding synonymous_variant LOW 453A>G Glu151Glu
M0084122 LJJBOEHF_00003 1560 4 Skin 0.20 protein_coding synonymous_variant LOW 348T>C His116His
M0084123 LJJBOEHF_00011 8540 3 Skin 0.15 protein_coding synonymous_variant LOW 1236T>C Tyr412Tyr
M0084124 LJJBOEHF_00011 8567 3 Skin 0.15 protein_coding synonymous_variant LOW 1263C>T Asp421Asp
M0084125 LJJBOEHF_00012 9976 3 Skin 0.15 protein_coding synonymous_variant LOW 360T>C Ser120Ser
M0084126 LJJBOEHF_00012 10189 3 Skin 0.15 protein_coding synonymous_variant LOW 573C>T Arg191Arg
M0084127 LJJBOEHF_00012 10197 3 Skin 0.15 protein_coding missense_variant MODERATE 581T>C Val194Ala
M0084128 LJJBOEHF_00012 10291 3 Skin 0.15 protein_coding synonymous_variant LOW 675A>G Ala225Ala
M0084129 LJJBOEHF_00012 10319 3 Skin 0.15 protein_coding missense_variant MODERATE 703G>C Ala235Pro
M0084130 LJJBOEHF_00013 10653 3 Skin 0.15 protein_coding synonymous_variant LOW 318T>C Asp106Asp
M0084131 LJJBOEHF_00017 17726 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -844C>G None
M0084132 LJJBOEHF_00019 18135 3 Skin 0.15 protein_coding synonymous_variant LOW 384C>A Ala128Ala
M0084133 LJJBOEHF_00021 20549 3 Skin 0.15 protein_coding synonymous_variant LOW 1137T>C Cys379Cys
M0084134 LJJBOEHF_00021 20552 3 Skin 0.15 protein_coding synonymous_variant LOW 1140C>G Val380Val
M0084135 LJJBOEHF_00019 18852 3 Skin 0.15 protein_coding synonymous_variant LOW 1101C>G Val367Val
M0084136 LJJBOEHF_00011 8819 3 Skin 0.15 protein_coding synonymous_variant LOW 1515C>G Thr505Thr
M0084137 LJJBOEHF_00011 8855 3 Skin 0.15 protein_coding synonymous_variant LOW 1551G>T Ala517Ala
M0084138 LJJBOEHF_00011 8882 3 Skin 0.15 protein_coding synonymous_variant LOW 1578G>C Gly526Gly
M0084139 LJJBOEHF_00003 1659 3 Skin 0.15 protein_coding missense_variant MODERATE 249T>G Asp83Glu
M0084140 LJJBOEHF_00007 3443 3 Skin 0.15 protein_coding synonymous_variant LOW 339C>G Gly113Gly
M0084141 LJJBOEHF_00010 6469 3 Skin 0.15 protein_coding synonymous_variant LOW 663T>C Asp221Asp
M0084142 LJJBOEHF_00010 6514 3 Skin 0.15 protein_coding synonymous_variant LOW 708C>T Val236Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term