Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3286
  Reference Plasmid   MET0776_bin.8__k81_61436
  Reference Plasmid Size   16097
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0084143 HCMAMLCC_00001 371 6 Skin 0.29 protein_coding downstream_gene_variant MODIFIER *114A>C None
M0084144 HCMAMLCC_00001 425 6 Skin 0.29 protein_coding downstream_gene_variant MODIFIER *60A>T None
M0084145 HCMAMLCC_00001 623 6 Skin 0.29 protein_coding synonymous_variant LOW 1569A>G Glu523Glu
M0084146 HCMAMLCC_00001 626 6 Skin 0.29 protein_coding synonymous_variant LOW 1566G>C Ser522Ser
M0084147 HCMAMLCC_00001 628 6 Skin 0.29 protein_coding missense_variant MODERATE 1564T>A Ser522Thr
M0084148 HCMAMLCC_00001 629 6 Skin 0.29 protein_coding synonymous_variant LOW 1563C>G Gly521Gly
M0084149 HCMAMLCC_00001 1334 5 Skin 0.24 protein_coding synonymous_variant LOW 858A>G Leu286Leu
M0084150 HCMAMLCC_00001 1844 5 Skin 0.24 protein_coding synonymous_variant LOW 348G>A Ala116Ala
M0084151 HCMAMLCC_00001 1871 5 Skin 0.24 protein_coding synonymous_variant LOW 321G>C Ala107Ala
M0084152 HCMAMLCC_00001 1889 5 Skin 0.24 protein_coding synonymous_variant LOW 303C>G Ala101Ala
M0084153 HCMAMLCC_00001 2018 5 Skin 0.24 protein_coding synonymous_variant LOW 174T>C Ile58Ile
M0084154 HCMAMLCC_00001 2145 5 Skin 0.24 protein_coding missense_variant MODERATE 47T>A Phe16Tyr
M0084155 HCMAMLCC_00001 2184 5 Skin 0.24 protein_coding missense_variant MODERATE 8C>T Thr3Ile
M0084156 HCMAMLCC_00002 2340 5 Skin 0.24 protein_coding synonymous_variant LOW 1020A>G Ala340Ala
M0084157 HCMAMLCC_00002 2354 5 Skin 0.24 protein_coding missense_variant MODERATE 1006G>A Val336Ile
M0084158 HCMAMLCC_00002 2355 5 Skin 0.24 protein_coding synonymous_variant LOW 1005T>C Arg335Arg
M0084159 HCMAMLCC_00002 2728 4 Skin 0.19 protein_coding missense_variant MODERATE 632C>T Ala211Val
M0084160 HCMAMLCC_00002 2826 5 Skin 0.24 protein_coding synonymous_variant LOW 534A>C Ala178Ala
M0084161 HCMAMLCC_00002 2902 5 Skin 0.24 protein_coding missense_variant MODERATE 458T>G Leu153Arg
M0084162 HCMAMLCC_00002 3036 5 Skin 0.24 protein_coding synonymous_variant LOW 324G>A Leu108Leu
M0084163 HCMAMLCC_00002 3039 5 Skin 0.24 protein_coding synonymous_variant LOW 321G>C Thr107Thr
M0084164 HCMAMLCC_00002 3060 5 Skin 0.24 protein_coding synonymous_variant LOW 300T>C Ile100Ile
M0084165 HCMAMLCC_00002 3069 5 Skin 0.24 protein_coding synonymous_variant LOW 291G>C Thr97Thr
M0084166 HCMAMLCC_00002 3090 5 Skin 0.24 protein_coding synonymous_variant LOW 270G>A Leu90Leu
M0084167 HCMAMLCC_00002 3192 5 Skin 0.24 protein_coding synonymous_variant LOW 168C>G Ala56Ala
M0084168 HCMAMLCC_00002 3204 5 Skin 0.24 protein_coding synonymous_variant LOW 156A>G Gly52Gly
M0084169 HCMAMLCC_00002 3237 5 Skin 0.24 protein_coding synonymous_variant LOW 123T>C Val41Val
M0084170 HCMAMLCC_00002 3355 5 Skin 0.24 protein_coding missense_variant MODERATE 5A>G Asn2Ser
M0084171 HCMAMLCC_00003 3467 4 Skin 0.19 protein_coding synonymous_variant LOW 1086T>C Gly362Gly
M0084172 HCMAMLCC_00003 3560 5 Skin 0.24 protein_coding synonymous_variant LOW 993T>C Leu331Leu
M0084173 HCMAMLCC_00003 3614 5 Skin 0.24 protein_coding synonymous_variant LOW 939A>G Pro313Pro
M0084174 HCMAMLCC_00003 3635 4 Skin 0.19 protein_coding missense_variant MODERATE 918C>G Asp306Glu
M0084175 HCMAMLCC_00003 3764 4 Skin 0.19 protein_coding synonymous_variant LOW 789A>C Pro263Pro
M0084176 HCMAMLCC_00003 3944 4 Skin 0.19 protein_coding synonymous_variant LOW 609A>G Val203Val
M0084177 HCMAMLCC_00003 4013 4 Skin 0.19 protein_coding synonymous_variant LOW 540G>A Ala180Ala
M0084178 HCMAMLCC_00003 4040 4 Skin 0.19 protein_coding synonymous_variant LOW 513G>A Gly171Gly
M0084179 HCMAMLCC_00003 4106 4 Skin 0.19 protein_coding synonymous_variant LOW 447T>C Asp149Asp
M0084180 HCMAMLCC_00003 4205 3 Skin 0.14 protein_coding synonymous_variant LOW 348C>A Gly116Gly
M0084181 HCMAMLCC_00003 4293 3 Skin 0.14 protein_coding missense_variant MODERATE 260A>G Asn87Ser
M0084182 HCMAMLCC_00004 5290 3 Skin 0.14 protein_coding synonymous_variant LOW 825C>T Asp275Asp
M0084183 HCMAMLCC_00004 5293 3 Skin 0.14 protein_coding synonymous_variant LOW 822C>G Gly274Gly
M0084184 HCMAMLCC_00004 5308 3 Skin 0.14 protein_coding synonymous_variant LOW 807G>A Glu269Glu
M0084185 HCMAMLCC_00004 5320 3 Skin 0.14 protein_coding synonymous_variant LOW 795C>G Ser265Ser
M0084186 HCMAMLCC_00004 5323 3 Skin 0.14 protein_coding synonymous_variant LOW 792C>G Gly264Gly
M0084187 HCMAMLCC_00004 5326 3 Skin 0.14 protein_coding synonymous_variant LOW 789A>G Glu263Glu
M0084188 HCMAMLCC_00004 5569 3 Skin 0.14 protein_coding synonymous_variant LOW 546G>C Leu182Leu
M0084189 HCMAMLCC_00004 5575 3 Skin 0.14 protein_coding synonymous_variant LOW 540C>G Ala180Ala
M0084190 HCMAMLCC_00004 5599 3 Skin 0.14 protein_coding synonymous_variant LOW 516G>C Ser172Ser
M0084191 HCMAMLCC_00004 5601 3 Skin 0.14 protein_coding missense_variant MODERATE 514T>C Ser172Pro
M0084192 HCMAMLCC_00004 5663 3 Skin 0.14 protein_coding missense_variant MODERATE 452C>T Pro151Leu
M0084193 HCMAMLCC_00004 5672 3 Skin 0.14 protein_coding missense_variant MODERATE 443C>T Pro148Leu
M0084194 HCMAMLCC_00004 5680 3 Skin 0.14 protein_coding synonymous_variant LOW 435C>G Pro145Pro
M0084195 HCMAMLCC_00004 5682 3 Skin 0.14 protein_coding missense_variant MODERATE 433C>T Pro145Ser
M0084196 HCMAMLCC_00004 5800 3 Skin 0.14 protein_coding synonymous_variant LOW 315A>G Lys105Lys
M0084197 HCMAMLCC_00004 6028 3 Skin 0.14 protein_coding synonymous_variant LOW 87C>G Leu29Leu
M0084198 HCMAMLCC_00005 6143 3 Skin 0.14 protein_coding synonymous_variant LOW 1149A>G Pro383Pro
M0084199 HCMAMLCC_00005 6296 3 Skin 0.14 protein_coding synonymous_variant LOW 996C>G Thr332Thr
M0084200 HCMAMLCC_00005 6434 3 Skin 0.14 protein_coding synonymous_variant LOW 858G>A Glu286Glu
M0084201 HCMAMLCC_00001 261 6 Skin 0.29 protein_coding downstream_gene_variant MODIFIER *224G>A None
M0084202 HCMAMLCC_00001 481 4 Skin 0.19 protein_coding downstream_gene_variant MODIFIER *4T>C None
M0084203 HCMAMLCC_00001 520 4 Skin 0.19 protein_coding missense_variant MODERATE 1672G>C Glu558Gln
M0084204 HCMAMLCC_00001 653 4 Skin 0.19 protein_coding synonymous_variant LOW 1539C>G Ser513Ser
M0084205 HCMAMLCC_00001 818 4 Skin 0.19 protein_coding synonymous_variant LOW 1374G>T Ser458Ser
M0084206 HCMAMLCC_00001 1205 4 Skin 0.19 protein_coding synonymous_variant LOW 987C>A Val329Val
M0084207 HCMAMLCC_00001 1226 4 Skin 0.19 protein_coding synonymous_variant LOW 966C>G Val322Val
M0084208 HCMAMLCC_00001 1316 4 Skin 0.19 protein_coding synonymous_variant LOW 876C>T Val292Val
M0084209 HCMAMLCC_00001 1544 4 Skin 0.19 protein_coding synonymous_variant LOW 648C>T Asp216Asp
M0084210 HCMAMLCC_00001 1577 4 Skin 0.19 protein_coding synonymous_variant LOW 615T>C Arg205Arg
M0084211 HCMAMLCC_00001 1610 4 Skin 0.19 protein_coding synonymous_variant LOW 582C>T Ala194Ala
M0084212 HCMAMLCC_00001 1658 4 Skin 0.19 protein_coding synonymous_variant LOW 534C>T Leu178Leu
M0084213 HCMAMLCC_00002 2310 3 Skin 0.14 protein_coding synonymous_variant LOW 1050C>G Thr350Thr
M0084214 HCMAMLCC_00002 2702 3 Skin 0.14 protein_coding missense_variant MODERATE 658G>T Val220Leu
M0084215 HCMAMLCC_00004 10035 5 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -3921T>C None
M0084216 HCMAMLCC_00004 10206 5 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -4092C>T None
M0084217 HCMAMLCC_00009 10242 5 Skin 0.24 protein_coding missense_variant MODERATE 301A>C Ile101Leu
M0084218 HCMAMLCC_00009 10275 5 Skin 0.24 protein_coding missense_variant MODERATE 268T>C Ser90Pro
M0084219 HCMAMLCC_00009 10278 5 Skin 0.24 protein_coding missense_variant MODERATE 265A>C Ser89Arg
M0084220 HCMAMLCC_00005 12109 9 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4818T>C None
M0084221 HCMAMLCC_00005 12118 9 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4827C>A None
M0084222 HCMAMLCC_00013 12180 9 Skin 0.43 protein_coding missense_variant MODERATE 238A>G Thr80Ala
M0084223 HCMAMLCC_00014 12499 9 Skin 0.43 protein_coding synonymous_variant LOW 1095T>A Pro365Pro
M0084224 HCMAMLCC_00014 12874 9 Skin 0.43 protein_coding synonymous_variant LOW 720A>G Ser240Ser
M0084225 HCMAMLCC_00014 13426 9 Skin 0.43 protein_coding synonymous_variant LOW 168T>C Ile56Ile
M0084226 HCMAMLCC_00007 13621 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4066A>T None
M0084227 HCMAMLCC_00007 13641 5 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -4086A>G None
M0084228 HCMAMLCC_00007 13646 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4091C>T None
M0084229 HCMAMLCC_00007 13651 9 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4096G>C None
M0084230 HCMAMLCC_00007 13675 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4120C>G None
M0084231 HCMAMLCC_00007 13685 7 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4130G>T None
M0084232 HCMAMLCC_00015 13799 5 Skin 0.24 protein_coding missense_variant MODERATE 70C>A Gln24Lys
M0084233 HCMAMLCC_00015 13831 4 Skin 0.19 protein_coding synonymous_variant LOW 102C>T Arg34Arg
M0084234 HCMAMLCC_00015 13841 5 Skin 0.24 protein_coding missense_variant MODERATE 112A>C Ile38Leu
M0084235 HCMAMLCC_00015 13849 5 Skin 0.24 protein_coding missense_variant MODERATE 120C>G Asp40Glu
M0084236 HCMAMLCC_00015 13868 4 Skin 0.19 protein_coding synonymous_variant LOW 139C>T Leu47Leu
M0084237 HCMAMLCC_00015 13921 8 Skin 0.38 protein_coding missense_variant MODERATE 192G>T Leu64Phe
M0084238 HCMAMLCC_00015 13969 7 Skin 0.33 protein_coding synonymous_variant LOW 240A>G Glu80Glu
M0084239 HCMAMLCC_00015 13993 8 Skin 0.38 protein_coding missense_variant MODERATE 264A>C Lys88Asn
M0084240 HCMAMLCC_00015 14083 5 Skin 0.24 protein_coding synonymous_variant LOW 354T>C Pro118Pro
M0084241 HCMAMLCC_00015 14287 4 Skin 0.19 protein_coding synonymous_variant LOW 558C>T Asp186Asp
M0084242 HCMAMLCC_00015 14356 7 Skin 0.33 protein_coding synonymous_variant LOW 627C>A Ala209Ala
M0084243 HCMAMLCC_00015 14416 3 Skin 0.14 protein_coding synonymous_variant LOW 687G>A Thr229Thr
M0084244 HCMAMLCC_00015 14440 3 Skin 0.14 protein_coding synonymous_variant LOW 711C>G Gly237Gly
M0084245 HCMAMLCC_00015 14452 6 Skin 0.29 protein_coding synonymous_variant LOW 723T>C Cys241Cys
M0084246 HCMAMLCC_00015 14515 7 Skin 0.33 protein_coding synonymous_variant LOW 786C>T Pro262Pro
M0084247 HCMAMLCC_00015 14527 3 Skin 0.14 protein_coding synonymous_variant LOW 798G>T Ser266Ser
M0084248 HCMAMLCC_00015 14586 6 Skin 0.29 protein_coding missense_variant MODERATE 857A>C Glu286Ala
M0084249 HCMAMLCC_00015 14588 3 Skin 0.14 protein_coding missense_variant MODERATE 859A>T Thr287Ser
M0084250 HCMAMLCC_00008 14726 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4694A>G None
M0084251 HCMAMLCC_00016 15750 4 Skin 0.19 protein_coding missense_variant MODERATE 37A>G Thr13Ala
M0084252 HCMAMLCC_00010 15905 7 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4967T>G None
M0084253 HCMAMLCC_00012 16013 8 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3926A>G None
M0084254 HCMAMLCC_00006 7922 4 Skin 0.19 protein_coding missense_variant MODERATE 549A>C Leu183Phe
M0084255 HCMAMLCC_00006 7924 4 Skin 0.19 protein_coding missense_variant MODERATE 551A>G Glu184Gly
M0084256 HCMAMLCC_00007 9403 3 Skin 0.14 protein_coding synonymous_variant LOW 153T>G Ser51Ser
M0084257 HCMAMLCC_00008 9959 3 Skin 0.14 protein_coding missense_variant MODERATE 74G>C Gly25Ala
M0084258 HCMAMLCC_00008 9969 3 Skin 0.14 protein_coding synonymous_variant LOW 64C>A Arg22Arg
M0084259 HCMAMLCC_00008 9979 3 Skin 0.14 protein_coding synonymous_variant LOW 54C>G Ala18Ala
M0084260 HCMAMLCC_00004 10126 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4012T>G None
M0084261 HCMAMLCC_00004 10174 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4060A>G None
M0084262 HCMAMLCC_00009 10281 3 Skin 0.14 protein_coding missense_variant MODERATE 262G>T Gly88Cys
M0084263 HCMAMLCC_00009 10302 3 Skin 0.14 protein_coding missense_variant MODERATE 241G>A Ala81Thr
M0084264 HCMAMLCC_00009 10314 3 Skin 0.14 protein_coding missense_variant MODERATE 229G>A Val77Met
M0084265 HCMAMLCC_00009 10325 4 Skin 0.19 protein_coding missense_variant MODERATE 218C>A Thr73Asn
M0084266 HCMAMLCC_00009 10350 4 Skin 0.19 protein_coding missense_variant MODERATE 193T>G Tyr65Asp
M0084267 HCMAMLCC_00009 10356 3 Skin 0.14 protein_coding missense_variant MODERATE 187C>T Arg63Trp
M0084268 HCMAMLCC_00009 10382 4 Skin 0.19 protein_coding missense_variant MODERATE 161T>C Val54Ala
M0084269 HCMAMLCC_00009 10433 3 Skin 0.14 protein_coding missense_variant MODERATE 110G>A Gly37Glu
M0084270 HCMAMLCC_00004 10554 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4440T>G None
M0084271 HCMAMLCC_00004 10556 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4442G>A None
M0084272 HCMAMLCC_00004 10561 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4447A>G None
M0084273 HCMAMLCC_00004 10572 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4458T>C None
M0084274 HCMAMLCC_00004 10595 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4481T>C None
M0084275 HCMAMLCC_00010 10732 3 Skin 0.14 protein_coding synonymous_variant LOW 207T>C His69His
M0084276 HCMAMLCC_00010 10733 4 Skin 0.19 protein_coding missense_variant MODERATE 206A>G His69Arg
M0084277 HCMAMLCC_00010 10740 4 Skin 0.19 protein_coding missense_variant MODERATE 199T>A Cys67Ser
M0084278 HCMAMLCC_00010 10925 4 Skin 0.19 protein_coding missense_variant MODERATE 14A>T Tyr5Phe
M0084279 HCMAMLCC_00004 10945 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4831T>A None
M0084280 HCMAMLCC_00011 10975 4 Skin 0.19 protein_coding synonymous_variant LOW 6A>G Arg2Arg
M0084281 HCMAMLCC_00011 11020 6 Skin 0.29 protein_coding synonymous_variant LOW 51C>T Gly17Gly
M0084282 HCMAMLCC_00011 11055 4 Skin 0.19 protein_coding missense_variant MODERATE 86A>G Asp29Gly
M0084283 HCMAMLCC_00011 11090 7 Skin 0.33 protein_coding missense_variant MODERATE 121A>C Ser41Arg
M0084284 HCMAMLCC_00011 11111 5 Skin 0.24 protein_coding missense_variant MODERATE 142C>T Arg48Trp
M0084285 HCMAMLCC_00005 11133 7 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3842G>C None
M0084286 HCMAMLCC_00012 11162 5 Skin 0.24 protein_coding missense_variant MODERATE 926C>T Ala309Val
M0084287 HCMAMLCC_00012 11187 7 Skin 0.33 protein_coding missense_variant MODERATE 901G>C Glu301Gln
M0084288 HCMAMLCC_00012 11211 5 Skin 0.24 protein_coding missense_variant MODERATE 877C>G Pro293Ala
M0084289 HCMAMLCC_00012 11267 7 Skin 0.33 protein_coding missense_variant MODERATE 821G>A Arg274His
M0084290 HCMAMLCC_00012 11293 3 Skin 0.14 protein_coding synonymous_variant LOW 795C>G Arg265Arg
M0084291 HCMAMLCC_00012 11326 3 Skin 0.14 protein_coding synonymous_variant LOW 762T>C Tyr254Tyr
M0084292 HCMAMLCC_00012 11329 6 Skin 0.29 protein_coding synonymous_variant LOW 759C>T Ala253Ala
M0084293 HCMAMLCC_00012 11332 6 Skin 0.29 protein_coding synonymous_variant LOW 756T>C Phe252Phe
M0084294 HCMAMLCC_00012 11359 3 Skin 0.14 protein_coding missense_variant MODERATE 729G>T Glu243Asp
M0084295 HCMAMLCC_00012 11362 3 Skin 0.14 protein_coding synonymous_variant LOW 726C>T Ile242Ile
M0084296 HCMAMLCC_00012 11370 6 Skin 0.29 protein_coding missense_variant MODERATE 718G>A Val240Ile
M0084297 HCMAMLCC_00012 11394 3 Skin 0.14 protein_coding missense_variant MODERATE 694G>C Gly232Arg
M0084298 HCMAMLCC_00012 11411 6 Skin 0.29 protein_coding missense_variant MODERATE 677G>T Cys226Phe
M0084299 HCMAMLCC_00012 11488 6 Skin 0.29 protein_coding synonymous_variant LOW 600T>C Gly200Gly
M0084300 HCMAMLCC_00012 11513 6 Skin 0.29 protein_coding missense_variant MODERATE 575G>A Arg192Gln
M0084301 HCMAMLCC_00012 11566 7 Skin 0.33 protein_coding synonymous_variant LOW 522A>C Pro174Pro
M0084302 HCMAMLCC_00012 11587 7 Skin 0.33 protein_coding synonymous_variant LOW 501T>C Asp167Asp
M0084303 HCMAMLCC_00012 11599 7 Skin 0.33 protein_coding synonymous_variant LOW 489C>T Tyr163Tyr
M0084304 HCMAMLCC_00012 11620 3 Skin 0.14 protein_coding synonymous_variant LOW 468C>T His156His
M0084305 HCMAMLCC_00012 11659 3 Skin 0.14 protein_coding missense_variant MODERATE 429G>C Gln143His
M0084306 HCMAMLCC_00012 11661 3 Skin 0.14 protein_coding missense_variant MODERATE 427C>A Gln143Lys
M0084307 HCMAMLCC_00012 11662 7 Skin 0.33 protein_coding synonymous_variant LOW 426T>G Ala142Ala
M0084308 HCMAMLCC_00012 11669 3 Skin 0.14 protein_coding missense_variant MODERATE 419A>G His140Arg
M0084309 HCMAMLCC_00012 11671 3 Skin 0.14 protein_coding synonymous_variant LOW 417T>C Val139Val
M0084310 HCMAMLCC_00012 11766 8 Skin 0.38 protein_coding missense_variant MODERATE 322T>C Ser108Pro
M0084311 HCMAMLCC_00012 11782 8 Skin 0.38 protein_coding synonymous_variant LOW 306A>C Pro102Pro
M0084312 HCMAMLCC_00012 11895 7 Skin 0.33 protein_coding synonymous_variant LOW 193C>T Leu65Leu
M0084313 HCMAMLCC_00013 12309 7 Skin 0.33 protein_coding missense_variant MODERATE 109A>T Ser37Cys
M0084314 HCMAMLCC_00014 12424 8 Skin 0.38 protein_coding synonymous_variant LOW 1170C>A Gly390Gly
M0084315 HCMAMLCC_00014 13252 4 Skin 0.19 protein_coding synonymous_variant LOW 342T>C Phe114Phe
M0084316 HCMAMLCC_00015 14080 3 Skin 0.14 protein_coding synonymous_variant LOW 351G>A Ala117Ala
M0084317 HCMAMLCC_00014 13348 3 Skin 0.14 protein_coding synonymous_variant LOW 246G>A Val82Val
M0084318 HCMAMLCC_00014 13399 4 Skin 0.19 protein_coding synonymous_variant LOW 195T>C Ile65Ile
M0084319 HCMAMLCC_00014 13461 3 Skin 0.14 protein_coding synonymous_variant LOW 133C>T Leu45Leu
M0084320 HCMAMLCC_00014 13578 3 Skin 0.14 protein_coding missense_variant MODERATE 16A>G Thr6Ala
M0084321 HCMAMLCC_00008 14776 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4744T>C None
M0084322 HCMAMLCC_00008 14803 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4771G>C None
M0084323 HCMAMLCC_00008 15001 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4969A>G None
M0084324 HCMAMLCC_00002 2805 3 Skin 0.14 protein_coding synonymous_variant LOW 555C>A Ala185Ala
M0084325 HCMAMLCC_00002 3273 4 Skin 0.19 protein_coding synonymous_variant LOW 87G>C Pro29Pro
M0084326 HCMAMLCC_00003 3438 3 Skin 0.14 protein_coding missense_variant MODERATE 1115C>A Ala372Asp
M0084327 HCMAMLCC_00003 3458 3 Skin 0.14 protein_coding synonymous_variant LOW 1095C>T Ala365Ala
M0084328 HCMAMLCC_00003 3461 3 Skin 0.14 protein_coding synonymous_variant LOW 1092G>A Pro364Pro
M0084329 HCMAMLCC_00003 3470 4 Skin 0.19 protein_coding synonymous_variant LOW 1083G>A Gln361Gln
M0084330 HCMAMLCC_00005 7139 3 Skin 0.14 protein_coding synonymous_variant LOW 153G>C Gly51Gly
M0084331 HCMAMLCC_00005 7143 3 Skin 0.14 protein_coding missense_variant MODERATE 149C>G Ser50Cys
M0084332 HCMAMLCC_00005 7144 3 Skin 0.14 protein_coding missense_variant MODERATE 148T>G Ser50Ala
M0084333 HCMAMLCC_00005 7148 3 Skin 0.14 protein_coding synonymous_variant LOW 144T>C Ser48Ser
M0084334 HCMAMLCC_00005 7216 3 Skin 0.14 protein_coding synonymous_variant LOW 76T>C Leu26Leu
M0084335 HCMAMLCC_00005 7262 3 Skin 0.14 protein_coding synonymous_variant LOW 30A>G Glu10Glu
M0084336 HCMAMLCC_00006 7397 3 Skin 0.14 protein_coding synonymous_variant LOW 24A>G Gln8Gln
M0084337 HCMAMLCC_00012 11311 3 Skin 0.14 protein_coding synonymous_variant LOW 777T>G Gly259Gly
M0084338 HCMAMLCC_00012 11317 3 Skin 0.14 protein_coding synonymous_variant LOW 771C>T Arg257Arg
M0084339 HCMAMLCC_00012 11380 3 Skin 0.14 protein_coding synonymous_variant LOW 708G>T Leu236Leu
M0084340 HCMAMLCC_00016 15753 3 Skin 0.14 protein_coding missense_variant MODERATE 34G>A Glu12Lys
M0084341 HCMAMLCC_00015 14498 3 Skin 0.14 protein_coding missense_variant MODERATE 769C>T Arg257Trp
M0084342 HCMAMLCC_00015 14540 3 Skin 0.14 protein_coding missense_variant MODERATE 811A>G Ser271Gly
M0084343 HCMAMLCC_00015 14624 3 Skin 0.14 protein_coding missense_variant MODERATE 895C>T Leu299Phe






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term