Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3297
  Reference Plasmid   MGYG000298108__MGYG000298108_83
  Reference Plasmid Size   4648
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0134165 OIHFFALO_00001 163 7 Oral 0.88 protein_coding synonymous_variant LOW 621C>T Arg207Arg
M0134166 OIHFFALO_00001 192 5 Oral 0.63 protein_coding synonymous_variant LOW 592C>T Leu198Leu
M0134167 OIHFFALO_00001 193 6 Oral 0.75 protein_coding synonymous_variant LOW 591T>C Asp197Asp
M0134168 OIHFFALO_00001 238 7 Oral 0.88 protein_coding synonymous_variant LOW 546C>T Arg182Arg
M0134169 OIHFFALO_00001 313 6 Oral 0.75 protein_coding synonymous_variant LOW 471C>T Thr157Thr
M0134170 OIHFFALO_00001 325 6 Oral 0.75 protein_coding synonymous_variant LOW 459C>T Phe153Phe
M0134171 OIHFFALO_00001 349 5 Oral 0.63 protein_coding synonymous_variant LOW 435C>T Gly145Gly
M0134172 OIHFFALO_00001 534 5 Oral 0.63 protein_coding synonymous_variant LOW 250C>T Leu84Leu
M0134173 OIHFFALO_00001 582 5 Oral 0.63 protein_coding synonymous_variant LOW 202T>C Leu68Leu
M0134174 OIHFFALO_00001 597 4 Oral 0.50 protein_coding synonymous_variant LOW 187C>T Leu63Leu
M0134175 OIHFFALO_00001 598 5 Oral 0.63 protein_coding synonymous_variant LOW 186A>G Leu62Leu
M0134176 OIHFFALO_00001 673 3 Oral 0.38 protein_coding synonymous_variant LOW 111C>T Gly37Gly
M0134177 OIHFFALO_00001 706 4 Oral 0.50 protein_coding synonymous_variant LOW 78G>T Ser26Ser
M0134178 OIHFFALO_00002 1008 6 Oral 0.75 protein_coding synonymous_variant LOW 852C>T Gly284Gly
M0134179 OIHFFALO_00002 1086 3 Oral 0.38 protein_coding synonymous_variant LOW 774G>A Leu258Leu
M0134180 OIHFFALO_00002 1089 3 Oral 0.38 protein_coding synonymous_variant LOW 771T>C Arg257Arg
M0134181 OIHFFALO_00002 1092 7 Oral 0.88 protein_coding synonymous_variant LOW 768A>G Glu256Glu
M0134182 OIHFFALO_00002 1323 3 Oral 0.38 protein_coding synonymous_variant LOW 537C>T Thr179Thr
M0134183 OIHFFALO_00002 1470 6 Oral 0.75 protein_coding synonymous_variant LOW 390T>G Val130Val
M0134184 OIHFFALO_00002 1812 3 Oral 0.38 protein_coding synonymous_variant LOW 48G>A Ser16Ser
M0134185 OIHFFALO_00002 1835 6 Oral 0.75 protein_coding missense_variant MODERATE 25A>G Ser9Gly
M0134186 OIHFFALO_00003 1868 7 Oral 0.88 protein_coding synonymous_variant LOW 1155A>G Gly385Gly
M0134187 OIHFFALO_00003 1880 3 Oral 0.38 protein_coding synonymous_variant LOW 1143C>G Ser381Ser
M0134188 OIHFFALO_00003 1898 4 Oral 0.50 protein_coding synonymous_variant LOW 1125C>G Leu375Leu
M0134189 OIHFFALO_00003 1910 6 Oral 0.75 protein_coding synonymous_variant LOW 1113A>G Val371Val
M0134190 OIHFFALO_00003 1913 4 Oral 0.50 protein_coding synonymous_variant LOW 1110A>G Ala370Ala
M0134191 OIHFFALO_00003 2252 3 Oral 0.38 protein_coding synonymous_variant LOW 771A>G Ala257Ala
M0134192 OIHFFALO_00003 2253 3 Oral 0.38 protein_coding missense_variant MODERATE 770C>A Ala257Glu
M0134193 OIHFFALO_00003 2279 6 Oral 0.75 protein_coding synonymous_variant LOW 744A>G Val248Val
M0134194 OIHFFALO_00003 2348 6 Oral 0.75 protein_coding synonymous_variant LOW 675T>G Leu225Leu
M0134195 OIHFFALO_00003 2351 6 Oral 0.75 protein_coding synonymous_variant LOW 672A>G Ala224Ala
M0134196 OIHFFALO_00003 2657 6 Oral 0.75 protein_coding synonymous_variant LOW 366A>G Ala122Ala
M0134197 OIHFFALO_00003 2720 4 Oral 0.50 protein_coding synonymous_variant LOW 303G>C Pro101Pro
M0134198 OIHFFALO_00003 2732 4 Oral 0.50 protein_coding synonymous_variant LOW 291T>C Thr97Thr
M0134199 OIHFFALO_00003 2942 4 Oral 0.50 protein_coding synonymous_variant LOW 81C>T Phe27Phe
M0134200 OIHFFALO_00003 2963 5 Oral 0.63 protein_coding synonymous_variant LOW 60A>G Ala20Ala
M0134201 OIHFFALO_00001 3086 4 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -2303A>G None
M0134202 OIHFFALO_00001 3153 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2370C>T None
M0134203 OIHFFALO_00001 3156 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2373T>C None
M0134204 OIHFFALO_00004 3218 5 Oral 0.63 protein_coding synonymous_variant LOW 1350A>C Arg450Arg
M0134205 OIHFFALO_00004 3248 6 Oral 0.75 protein_coding synonymous_variant LOW 1320C>T Gly440Gly
M0134206 OIHFFALO_00004 3323 7 Oral 0.88 protein_coding synonymous_variant LOW 1245T>C Gly415Gly
M0134207 OIHFFALO_00004 3590 8 Oral 1.00 protein_coding synonymous_variant LOW 978T>C Asp326Asp
M0134208 OIHFFALO_00004 3730 8 Oral 1.00 protein_coding missense_variant MODERATE 838A>G Asn280Asp
M0134209 OIHFFALO_00004 3938 3 Oral 0.38 protein_coding synonymous_variant LOW 630G>T Pro210Pro
M0134210 OIHFFALO_00004 3992 5 Oral 0.63 protein_coding synonymous_variant LOW 576T>C Val192Val
M0134211 OIHFFALO_00004 4019 5 Oral 0.63 protein_coding synonymous_variant LOW 549C>T Gly183Gly
M0134212 OIHFFALO_00004 4020 6 Oral 0.75 protein_coding missense_variant MODERATE 548G>A Gly183Asp
M0134213 OIHFFALO_00004 4021 6 Oral 0.75 protein_coding missense_variant MODERATE 547G>A Gly183Ser
M0134214 OIHFFALO_00004 4039 6 Oral 0.75 protein_coding missense_variant MODERATE 529A>G Thr177Ala
M0134215 OIHFFALO_00004 4057 7 Oral 0.88 protein_coding missense_variant MODERATE 511A>T Thr171Ser
M0134216 OIHFFALO_00004 4190 4 Oral 0.50 protein_coding synonymous_variant LOW 378A>G Ala126Ala
M0134217 OIHFFALO_00004 4238 7 Oral 0.88 protein_coding synonymous_variant LOW 330T>C Ser110Ser
M0134218 OIHFFALO_00004 4248 4 Oral 0.50 protein_coding missense_variant MODERATE 320C>A Ala107Asp
M0134219 OIHFFALO_00004 4316 7 Oral 0.88 protein_coding synonymous_variant LOW 252A>G Val84Val
M0134220 OIHFFALO_00001 280 4 Oral 0.50 protein_coding synonymous_variant LOW 504G>A Ala168Ala
M0134221 OIHFFALO_00001 343 3 Oral 0.38 protein_coding synonymous_variant LOW 441G>T Ala147Ala
M0134222 OIHFFALO_00001 394 3 Oral 0.38 protein_coding synonymous_variant LOW 390T>C His130His
M0134223 OIHFFALO_00001 460 3 Oral 0.38 protein_coding synonymous_variant LOW 324C>T Gly108Gly
M0134224 OIHFFALO_00002 1104 5 Oral 0.63 protein_coding synonymous_variant LOW 756T>C Gly252Gly
M0134225 OIHFFALO_00002 1714 4 Oral 0.50 protein_coding missense_variant MODERATE 146C>T Thr49Ile
M0134226 OIHFFALO_00003 1904 3 Oral 0.38 protein_coding synonymous_variant LOW 1119C>G Leu373Leu
M0134227 OIHFFALO_00003 1906 3 Oral 0.38 protein_coding missense_variant MODERATE 1117C>T Leu373Phe
M0134228 OIHFFALO_00003 1907 3 Oral 0.38 protein_coding missense_variant MODERATE 1116G>T Leu372Phe
M0134229 OIHFFALO_00003 1909 3 Oral 0.38 protein_coding synonymous_variant LOW 1114T>C Leu372Leu
M0134230 OIHFFALO_00003 2072 7 Oral 0.88 protein_coding synonymous_variant LOW 951C>G Pro317Pro
M0134231 OIHFFALO_00003 2288 4 Oral 0.50 protein_coding synonymous_variant LOW 735C>T Ala245Ala
M0134232 OIHFFALO_00003 2600 5 Oral 0.63 protein_coding synonymous_variant LOW 423T>C Arg141Arg
M0134233 OIHFFALO_00004 3440 4 Oral 0.50 protein_coding synonymous_variant LOW 1128C>T Asp376Asp
M0134234 OIHFFALO_00004 3608 3 Oral 0.38 protein_coding synonymous_variant LOW 960G>A Ala320Ala
M0134235 OIHFFALO_00004 3729 7 Oral 0.88 protein_coding missense_variant MODERATE 839A>G Asn280Ser
M0134236 OIHFFALO_00004 4151 3 Oral 0.38 protein_coding synonymous_variant LOW 417G>A Ala139Ala
M0134237 OIHFFALO_00004 4235 4 Oral 0.50 protein_coding missense_variant MODERATE 333C>G Asp111Glu
M0134238 OIHFFALO_00001 358 4 Oral 0.50 protein_coding synonymous_variant LOW 426C>T Gly142Gly
M0134239 OIHFFALO_00001 370 3 Oral 0.38 protein_coding synonymous_variant LOW 414T>C Thr138Thr
M0134240 OIHFFALO_00003 2198 5 Oral 0.63 protein_coding synonymous_variant LOW 825T>C Phe275Phe
M0134241 OIHFFALO_00003 2230 3 Oral 0.38 protein_coding synonymous_variant LOW 793C>T Leu265Leu
M0134242 OIHFFALO_00003 2342 3 Oral 0.38 protein_coding synonymous_variant LOW 681T>C Val227Val
M0134243 OIHFFALO_00003 2426 3 Oral 0.38 protein_coding synonymous_variant LOW 597C>T Gly199Gly
M0134244 OIHFFALO_00003 2827 6 Oral 0.75 protein_coding synonymous_variant LOW 196T>C Leu66Leu
M0134245 OIHFFALO_00003 2834 3 Oral 0.38 protein_coding synonymous_variant LOW 189C>G Ala63Ala
M0134246 OIHFFALO_00003 2837 3 Oral 0.38 protein_coding synonymous_variant LOW 186T>G Leu62Leu
M0134247 OIHFFALO_00003 2890 4 Oral 0.50 protein_coding missense_variant MODERATE 133G>T Ala45Ser
M0134248 OIHFFALO_00004 3965 3 Oral 0.38 protein_coding synonymous_variant LOW 603T>C Gly201Gly
M0134249 OIHFFALO_00004 4237 3 Oral 0.38 protein_coding missense_variant MODERATE 331G>A Asp111Asn
M0134250 OIHFFALO_00004 4274 3 Oral 0.38 protein_coding synonymous_variant LOW 294G>A Ala98Ala
M0134251 OIHFFALO_00003 2605 3 Oral 0.38 protein_coding missense_variant MODERATE 418G>A Gly140Ser
M0134252 OIHFFALO_00003 2891 3 Oral 0.38 protein_coding synonymous_variant LOW 132T>C Ser44Ser
M0134253 OIHFFALO_00001 3051 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2268C>T None
M0134254 OIHFFALO_00001 3127 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2344T>C None
M0134255 OIHFFALO_00004 4553 4 Oral 0.50 protein_coding synonymous_variant LOW 15A>G Ala5Ala
M0134256 OIHFFALO_00003 2594 3 Oral 0.38 protein_coding synonymous_variant LOW 429C>T Val143Val
M0134257 OIHFFALO_00004 3620 3 Oral 0.38 protein_coding synonymous_variant LOW 948C>T Gly316Gly
M0134258 OIHFFALO_00004 4265 3 Oral 0.38 protein_coding synonymous_variant LOW 303A>G Ala101Ala
M0134259 OIHFFALO_00003 2771 3 Oral 0.38 protein_coding synonymous_variant LOW 252A>G Ala84Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term