Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3334
  Reference Plasmid   MGYG000298632__MGYG000298632_228
  Reference Plasmid Size   12230
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0135590 OJKIDCLM_00001 1243 3 Oral 0.27 protein_coding synonymous_variant LOW 798A>G Thr266Thr
M0135591 OJKIDCLM_00001 1422 3 Oral 0.27 protein_coding missense_variant MODERATE 619A>G Ile207Val
M0135592 OJKIDCLM_00001 1551 4 Oral 0.36 protein_coding missense_variant MODERATE 490A>G Thr164Ala
M0135593 OJKIDCLM_00001 1588 4 Oral 0.36 protein_coding synonymous_variant LOW 453T>C Val151Val
M0135594 OJKIDCLM_00001 1603 4 Oral 0.36 protein_coding synonymous_variant LOW 438T>C Asn146Asn
M0135595 OJKIDCLM_00002 2241 5 Oral 0.45 protein_coding synonymous_variant LOW 1740T>C Asn580Asn
M0135596 OJKIDCLM_00002 2346 4 Oral 0.36 protein_coding missense_variant MODERATE 1635A>C Glu545Asp
M0135597 OJKIDCLM_00002 2888 5 Oral 0.45 protein_coding synonymous_variant LOW 1093C>T Leu365Leu
M0135598 OJKIDCLM_00002 3102 4 Oral 0.36 protein_coding synonymous_variant LOW 879A>T Pro293Pro
M0135599 OJKIDCLM_00002 3201 5 Oral 0.45 protein_coding synonymous_variant LOW 780A>G Gln260Gln
M0135600 OJKIDCLM_00002 3237 4 Oral 0.36 protein_coding synonymous_variant LOW 744C>T Arg248Arg
M0135601 OJKIDCLM_00002 3258 4 Oral 0.36 protein_coding synonymous_variant LOW 723T>A Ile241Ile
M0135602 OJKIDCLM_00002 3429 5 Oral 0.45 protein_coding synonymous_variant LOW 552T>C Phe184Phe
M0135603 OJKIDCLM_00002 3432 5 Oral 0.45 protein_coding synonymous_variant LOW 549A>G Glu183Glu
M0135604 OJKIDCLM_00002 3441 5 Oral 0.45 protein_coding synonymous_variant LOW 540T>C Ile180Ile
M0135605 OJKIDCLM_00002 3795 4 Oral 0.36 protein_coding synonymous_variant LOW 186T>G Val62Val
M0135606 OJKIDCLM_00001 4079 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -2039A>C None
M0135607 OJKIDCLM_00001 4172 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -2132C>A None
M0135608 OJKIDCLM_00001 4180 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -2140A>G None
M0135609 OJKIDCLM_00001 4182 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2142G>A None
M0135610 OJKIDCLM_00001 4230 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2190A>C None
M0135611 OJKIDCLM_00001 4300 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -2260A>G None
M0135612 OJKIDCLM_00001 4351 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2311G>A None
M0135613 OJKIDCLM_00001 4365 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2325A>C None
M0135614 OJKIDCLM_00003 4793 5 Oral 0.45 protein_coding missense_variant MODERATE 34A>G Ile12Val
M0135615 OJKIDCLM_00003 4801 5 Oral 0.45 protein_coding synonymous_variant LOW 42C>T Ser14Ser
M0135616 OJKIDCLM_00003 4810 3 Oral 0.27 protein_coding synonymous_variant LOW 51A>T Val17Val
M0135617 OJKIDCLM_00003 4894 5 Oral 0.45 protein_coding synonymous_variant LOW 135A>T Ala45Ala
M0135618 OJKIDCLM_00003 5121 5 Oral 0.45 protein_coding missense_variant MODERATE 362C>T Thr121Met
M0135619 OJKIDCLM_00003 5288 5 Oral 0.45 protein_coding missense_variant MODERATE 529T>A Ser177Thr
M0135620 OJKIDCLM_00003 5397 4 Oral 0.36 protein_coding missense_variant MODERATE 638C>T Ala213Val
M0135621 OJKIDCLM_00003 5749 5 Oral 0.45 protein_coding synonymous_variant LOW 990A>G Val330Val
M0135622 OJKIDCLM_00003 5881 3 Oral 0.27 protein_coding missense_variant MODERATE 1122T>G His374Gln
M0135623 OJKIDCLM_00003 5882 3 Oral 0.27 protein_coding missense_variant MODERATE 1123A>G Ile375Val
M0135624 OJKIDCLM_00004 6190 4 Oral 0.36 protein_coding synonymous_variant LOW 171T>C Ser57Ser
M0135625 OJKIDCLM_00004 6232 5 Oral 0.45 protein_coding synonymous_variant LOW 213T>C Asp71Asp
M0135626 OJKIDCLM_00004 6316 4 Oral 0.36 protein_coding synonymous_variant LOW 297G>A Ala99Ala
M0135627 OJKIDCLM_00004 6358 3 Oral 0.27 protein_coding synonymous_variant LOW 339T>C Ala113Ala
M0135628 OJKIDCLM_00004 6364 4 Oral 0.36 protein_coding synonymous_variant LOW 345A>G Ala115Ala
M0135629 OJKIDCLM_00004 6411 4 Oral 0.36 protein_coding missense_variant MODERATE 392G>A Arg131Lys
M0135630 OJKIDCLM_00004 6448 3 Oral 0.27 protein_coding synonymous_variant LOW 429A>G Ser143Ser
M0135631 OJKIDCLM_00005 6768 4 Oral 0.36 protein_coding synonymous_variant LOW 201T>A Ala67Ala
M0135632 OJKIDCLM_00005 6849 4 Oral 0.36 protein_coding missense_variant MODERATE 282A>T Leu94Phe
M0135633 OJKIDCLM_00005 6936 4 Oral 0.36 protein_coding synonymous_variant LOW 369A>G Lys123Lys
M0135634 OJKIDCLM_00005 7020 3 Oral 0.27 protein_coding synonymous_variant LOW 453C>T Phe151Phe
M0135635 OJKIDCLM_00005 7021 3 Oral 0.27 protein_coding synonymous_variant LOW 454T>C Leu152Leu
M0135636 OJKIDCLM_00005 7022 3 Oral 0.27 protein_coding stop_gained HIGH 455T>A Leu152*
M0135637 OJKIDCLM_00005 7055 3 Oral 0.27 protein_coding missense_variant MODERATE 488A>T Tyr163Phe
M0135638 OJKIDCLM_00005 7209 4 Oral 0.36 protein_coding synonymous_variant LOW 642C>T Gly214Gly
M0135639 OJKIDCLM_00005 7219 3 Oral 0.27 protein_coding missense_variant MODERATE 652T>A Phe218Ile
M0135640 OJKIDCLM_00005 7290 4 Oral 0.36 protein_coding synonymous_variant LOW 723T>C Phe241Phe
M0135641 OJKIDCLM_00005 7314 4 Oral 0.36 protein_coding synonymous_variant LOW 747T>C Thr249Thr
M0135642 OJKIDCLM_00002 7517 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -3537T>G None
M0135643 OJKIDCLM_00002 7588 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3608A>G None
M0135644 OJKIDCLM_00002 7601 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -3621C>A None
M0135645 OJKIDCLM_00002 7626 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3646A>C None
M0135646 OJKIDCLM_00002 7693 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -3713G>T None
M0135647 OJKIDCLM_00002 7697 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3717C>T None
M0135648 OJKIDCLM_00002 7752 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3772C>T None
M0135649 OJKIDCLM_00002 7755 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3775T>C None
M0135650 OJKIDCLM_00002 7813 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -3833G>T None
M0135651 OJKIDCLM_00002 8693 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4713A>G None
M0135652 OJKIDCLM_00002 8733 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4753T>A None
M0135653 OJKIDCLM_00008 8918 5 Oral 0.45 protein_coding synonymous_variant LOW 93A>G Ala31Ala
M0135654 OJKIDCLM_00008 8955 5 Oral 0.45 protein_coding missense_variant MODERATE 130T>C Ser44Pro
M0135655 OJKIDCLM_00008 8969 3 Oral 0.27 protein_coding synonymous_variant LOW 144C>T Thr48Thr
M0135656 OJKIDCLM_00008 8982 3 Oral 0.27 protein_coding missense_variant MODERATE 157G>C Val53Leu
M0135657 OJKIDCLM_00007 9045 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -439T>C None
M0135658 OJKIDCLM_00009 9346 6 Oral 0.55 protein_coding missense_variant MODERATE 293G>A Gly98Asp
M0135659 OJKIDCLM_00009 9347 4 Oral 0.36 protein_coding synonymous_variant LOW 294C>T Gly98Gly
M0135660 OJKIDCLM_00009 9366 5 Oral 0.45 protein_coding missense_variant MODERATE 313T>C Tyr105His
M0135661 OJKIDCLM_00009 9374 3 Oral 0.27 protein_coding synonymous_variant LOW 321A>T Ala107Ala
M0135662 OJKIDCLM_00009 9481 5 Oral 0.45 protein_coding missense_variant MODERATE 428A>C Glu143Ala
M0135663 OJKIDCLM_00009 9698 6 Oral 0.55 protein_coding missense_variant MODERATE 645T>A His215Gln
M0135664 OJKIDCLM_00009 9873 3 Oral 0.27 protein_coding missense_variant MODERATE 820A>G Thr274Ala
M0135665 OJKIDCLM_00009 9947 5 Oral 0.45 protein_coding synonymous_variant LOW 894T>A Ile298Ile
M0135666 OJKIDCLM_00009 9962 6 Oral 0.55 protein_coding synonymous_variant LOW 909T>G Thr303Thr
M0135667 OJKIDCLM_00009 9966 6 Oral 0.55 protein_coding missense_variant MODERATE 913C>T Pro305Ser
M0135668 OJKIDCLM_00009 9967 6 Oral 0.55 protein_coding missense_variant MODERATE 914C>A Pro305His
M0135669 OJKIDCLM_00009 10025 5 Oral 0.45 protein_coding synonymous_variant LOW 972T>C Pro324Pro
M0135670 OJKIDCLM_00009 10266 5 Oral 0.45 protein_coding missense_variant MODERATE 1213G>C Ala405Pro
M0135671 OJKIDCLM_00009 10274 5 Oral 0.45 protein_coding synonymous_variant LOW 1221T>C Ala407Ala
M0135672 OJKIDCLM_00009 10342 4 Oral 0.36 protein_coding missense_variant MODERATE 1289C>T Thr430Met
M0135673 OJKIDCLM_00009 10378 3 Oral 0.27 protein_coding missense_variant MODERATE 1325A>C Glu442Ala
M0135674 OJKIDCLM_00009 10394 3 Oral 0.27 protein_coding synonymous_variant LOW 1341T>G Thr447Thr
M0135675 OJKIDCLM_00009 10415 4 Oral 0.36 protein_coding synonymous_variant LOW 1362A>T Ile454Ile
M0135676 OJKIDCLM_00009 10450 6 Oral 0.55 protein_coding missense_variant MODERATE 1397G>A Arg466Gln
M0135677 OJKIDCLM_00002 8643 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4663A>T None
M0135678 OJKIDCLM_00002 8784 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4804G>A None
M0135679 OJKIDCLM_00002 8794 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4814A>T None
M0135680 OJKIDCLM_00008 8999 3 Oral 0.27 protein_coding synonymous_variant LOW 174C>T Gly58Gly
M0135681 OJKIDCLM_00008 9005 3 Oral 0.27 protein_coding missense_variant MODERATE 180C>A Asp60Glu
M0135682 OJKIDCLM_00008 9008 4 Oral 0.36 protein_coding synonymous_variant LOW 183T>C Asp61Asp
M0135683 OJKIDCLM_00009 9058 5 Oral 0.45 protein_coding missense_variant MODERATE 5G>A Arg2Lys
M0135684 OJKIDCLM_00009 9062 5 Oral 0.45 protein_coding synonymous_variant LOW 9A>G Lys3Lys
M0135685 OJKIDCLM_00009 9086 3 Oral 0.27 protein_coding synonymous_variant LOW 33G>A Gln11Gln
M0135686 OJKIDCLM_00009 9089 3 Oral 0.27 protein_coding synonymous_variant LOW 36G>T Thr12Thr
M0135687 OJKIDCLM_00009 9096 4 Oral 0.36 protein_coding missense_variant MODERATE 43G>A Ala15Thr
M0135688 OJKIDCLM_00009 9097 4 Oral 0.36 protein_coding missense_variant MODERATE 44C>T Ala15Val
M0135689 OJKIDCLM_00009 9106 4 Oral 0.36 protein_coding missense_variant MODERATE 53T>C Leu18Ser
M0135690 OJKIDCLM_00009 9478 3 Oral 0.27 protein_coding missense_variant MODERATE 425A>G Asn142Ser
M0135691 OJKIDCLM_00009 9485 3 Oral 0.27 protein_coding synonymous_variant LOW 432A>G Arg144Arg
M0135692 OJKIDCLM_00009 9758 3 Oral 0.27 protein_coding synonymous_variant LOW 705G>C Gly235Gly
M0135693 OJKIDCLM_00009 9773 3 Oral 0.27 protein_coding synonymous_variant LOW 720C>T Phe240Phe
M0135694 OJKIDCLM_00009 10262 3 Oral 0.27 protein_coding synonymous_variant LOW 1209A>G Lys403Lys
M0135695 OJKIDCLM_00009 10289 5 Oral 0.45 protein_coding synonymous_variant LOW 1236T>C Gly412Gly
M0135696 OJKIDCLM_00009 10331 4 Oral 0.36 protein_coding synonymous_variant LOW 1278T>G Pro426Pro
M0135697 OJKIDCLM_00009 10332 5 Oral 0.45 protein_coding missense_variant MODERATE 1279A>G Thr427Ala
M0135698 OJKIDCLM_00009 10824 3 Oral 0.27 protein_coding missense_variant MODERATE 1771G>A Ala591Thr
M0135699 OJKIDCLM_00009 10904 3 Oral 0.27 protein_coding synonymous_variant LOW 1851C>T Asn617Asn
M0135700 OJKIDCLM_00009 10961 3 Oral 0.27 protein_coding synonymous_variant LOW 1908C>T Phe636Phe
M0135701 OJKIDCLM_00009 10977 3 Oral 0.27 protein_coding synonymous_variant LOW 1924T>C Leu642Leu
M0135702 OJKIDCLM_00009 11002 4 Oral 0.36 protein_coding missense_variant MODERATE 1949T>A Ile650Lys
M0135703 OJKIDCLM_00009 11051 5 Oral 0.45 protein_coding synonymous_variant LOW 1998T>C Pro666Pro
M0135704 OJKIDCLM_00009 11066 5 Oral 0.45 protein_coding synonymous_variant LOW 2013A>T Gly671Gly
M0135705 OJKIDCLM_00009 11144 4 Oral 0.36 protein_coding synonymous_variant LOW 2091T>A Ala697Ala
M0135706 OJKIDCLM_00009 11231 4 Oral 0.36 protein_coding synonymous_variant LOW 2178A>T Pro726Pro
M0135707 OJKIDCLM_00009 11320 4 Oral 0.36 protein_coding missense_variant MODERATE 2267C>T Ser756Phe
M0135708 OJKIDCLM_00009 11348 3 Oral 0.27 protein_coding synonymous_variant LOW 2295A>T Ala765Ala
M0135709 OJKIDCLM_00009 11408 4 Oral 0.36 protein_coding synonymous_variant LOW 2355A>T Ser785Ser
M0135710 OJKIDCLM_00009 11411 3 Oral 0.27 protein_coding missense_variant MODERATE 2358T>G Ile786Met
M0135711 OJKIDCLM_00009 11546 3 Oral 0.27 protein_coding synonymous_variant LOW 2493C>T Asn831Asn
M0135712 OJKIDCLM_00009 11552 4 Oral 0.36 protein_coding synonymous_variant LOW 2499C>T Gly833Gly
M0135713 OJKIDCLM_00009 11574 3 Oral 0.27 protein_coding missense_variant MODERATE 2521G>A Asp841Asn
M0135714 OJKIDCLM_00009 11592 3 Oral 0.27 protein_coding missense_variant MODERATE 2539A>G Asn847Asp
M0135715 OJKIDCLM_00009 11593 3 Oral 0.27 protein_coding missense_variant MODERATE 2540A>C Asn847Thr
M0135716 OJKIDCLM_00009 11595 3 Oral 0.27 protein_coding missense_variant MODERATE 2542G>A Ala848Thr
M0135717 OJKIDCLM_00009 11630 4 Oral 0.36 protein_coding synonymous_variant LOW 2577A>T Thr859Thr
M0135718 OJKIDCLM_00009 11639 4 Oral 0.36 protein_coding synonymous_variant LOW 2586A>C Ser862Ser
M0135719 OJKIDCLM_00009 11699 3 Oral 0.27 protein_coding synonymous_variant LOW 2646C>T Gly882Gly
M0135720 OJKIDCLM_00009 11741 4 Oral 0.36 protein_coding synonymous_variant LOW 2688C>T Val896Val
M0135721 OJKIDCLM_00002 8609 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4629T>A None
M0135722 OJKIDCLM_00002 8629 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4649A>G None
M0135723 OJKIDCLM_00008 8951 3 Oral 0.27 protein_coding missense_variant MODERATE 126C>G Asn42Lys
M0135724 OJKIDCLM_00009 11072 3 Oral 0.27 protein_coding synonymous_variant LOW 2019T>C Pro673Pro
M0135725 OJKIDCLM_00009 10083 3 Oral 0.27 protein_coding missense_variant MODERATE 1030T>A Ser344Thr
M0135726 OJKIDCLM_00009 10195 3 Oral 0.27 protein_coding missense_variant MODERATE 1142G>A Gly381Asp
M0135727 OJKIDCLM_00009 11267 3 Oral 0.27 protein_coding missense_variant MODERATE 2214A>T Lys738Asn
M0135728 OJKIDCLM_00009 11268 3 Oral 0.27 protein_coding missense_variant MODERATE 2215G>A Ala739Thr
M0135729 OJKIDCLM_00002 2517 4 Oral 0.36 protein_coding synonymous_variant LOW 1464T>A Val488Val
M0135730 OJKIDCLM_00002 2520 3 Oral 0.27 protein_coding synonymous_variant LOW 1461A>T Ala487Ala
M0135731 OJKIDCLM_00002 2556 3 Oral 0.27 protein_coding synonymous_variant LOW 1425T>C His475His
M0135732 OJKIDCLM_00002 2730 3 Oral 0.27 protein_coding synonymous_variant LOW 1251T>C Leu417Leu
M0135733 OJKIDCLM_00001 4042 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2002T>A None
M0135734 OJKIDCLM_00001 4290 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2250C>G None
M0135735 OJKIDCLM_00001 4301 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2261A>G None
M0135736 OJKIDCLM_00001 4314 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2274G>A None
M0135737 OJKIDCLM_00001 4321 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2281T>C None
M0135738 OJKIDCLM_00001 4474 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2434A>T None
M0135739 OJKIDCLM_00001 4548 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2508T>C None
M0135740 OJKIDCLM_00001 4549 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2509A>G None
M0135741 OJKIDCLM_00001 4554 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2514T>C None
M0135742 OJKIDCLM_00001 4558 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2518T>C None
M0135743 OJKIDCLM_00001 4563 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2523T>C None
M0135744 OJKIDCLM_00001 4565 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2525T>A None
M0135745 OJKIDCLM_00001 4573 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2533C>G None
M0135746 OJKIDCLM_00001 4583 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2543T>C None
M0135747 OJKIDCLM_00001 4588 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2548C>T None
M0135748 OJKIDCLM_00001 4590 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2550T>A None
M0135749 OJKIDCLM_00001 4646 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2606A>G None
M0135750 OJKIDCLM_00001 4677 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2637T>C None
M0135751 OJKIDCLM_00003 5002 3 Oral 0.27 protein_coding synonymous_variant LOW 243T>C His81His
M0135752 OJKIDCLM_00003 5119 4 Oral 0.36 protein_coding synonymous_variant LOW 360A>G Lys120Lys
M0135753 OJKIDCLM_00003 5470 3 Oral 0.27 protein_coding synonymous_variant LOW 711C>T Thr237Thr
M0135754 OJKIDCLM_00003 5746 3 Oral 0.27 protein_coding synonymous_variant LOW 987C>T Thr329Thr
M0135755 OJKIDCLM_00003 5844 3 Oral 0.27 protein_coding missense_variant MODERATE 1085A>G Asp362Gly
M0135756 OJKIDCLM_00004 6260 4 Oral 0.36 protein_coding missense_variant MODERATE 241T>C Ser81Pro
M0135757 OJKIDCLM_00002 7844 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3864T>A None
M0135758 OJKIDCLM_00002 7867 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3887A>G None
M0135759 OJKIDCLM_00002 7871 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3891A>G None
M0135760 OJKIDCLM_00002 7927 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3947G>A None
M0135761 OJKIDCLM_00002 7969 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3989T>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term