Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3338
  Reference Plasmid   MGYG000298720__MGYG000298720_16
  Reference Plasmid Size   33214
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0135980 JKHGELEE_00007 6457 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -49A>G None
M0135981 JKHGELEE_00007 6535 3 Oral 0.30 protein_coding synonymous_variant LOW 30A>T Ala10Ala
M0135982 JKHGELEE_00007 6559 3 Oral 0.30 protein_coding missense_variant MODERATE 54C>A Phe18Leu
M0135983 JKHGELEE_00007 7033 4 Oral 0.40 protein_coding synonymous_variant LOW 528T>C Ile176Ile
M0135984 JKHGELEE_00007 7149 3 Oral 0.30 protein_coding missense_variant MODERATE 644A>G His215Arg
M0135985 JKHGELEE_00008 7197 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -40A>G None
M0135986 JKHGELEE_00008 7378 3 Oral 0.30 protein_coding missense_variant MODERATE 142G>A Val48Ile
M0135987 JKHGELEE_00008 7584 3 Oral 0.30 protein_coding synonymous_variant LOW 348T>C Ser116Ser
M0135988 JKHGELEE_00008 7587 3 Oral 0.30 protein_coding synonymous_variant LOW 351T>C Asn117Asn
M0135989 JKHGELEE_00008 7614 3 Oral 0.30 protein_coding synonymous_variant LOW 378A>T Ile126Ile
M0135990 JKHGELEE_00008 7627 3 Oral 0.30 protein_coding missense_variant MODERATE 391G>T Ala131Ser
M0135991 JKHGELEE_00008 7767 3 Oral 0.30 protein_coding synonymous_variant LOW 531T>C Ile177Ile
M0135992 JKHGELEE_00008 8130 4 Oral 0.40 protein_coding synonymous_variant LOW 894T>C Gly298Gly
M0135993 JKHGELEE_00009 8276 4 Oral 0.40 protein_coding synonymous_variant LOW 102T>C Ala34Ala
M0135994 JKHGELEE_00010 8382 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -3G>A None
M0135995 JKHGELEE_00010 8617 4 Oral 0.40 protein_coding missense_variant MODERATE 233T>G Val78Gly
M0135996 JKHGELEE_00010 8738 4 Oral 0.40 protein_coding synonymous_variant LOW 354C>T Tyr118Tyr
M0135997 JKHGELEE_00010 8744 3 Oral 0.30 protein_coding synonymous_variant LOW 360A>G Val120Val
M0135998 JKHGELEE_00011 8884 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -191C>T None
M0135999 JKHGELEE_00011 8885 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -190T>C None
M0136000 JKHGELEE_00011 8887 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -188A>G None
M0136001 JKHGELEE_00011 8890 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -185C>A None
M0136002 JKHGELEE_00011 8948 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -127T>C None
M0136003 JKHGELEE_00011 8960 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -115T>C None
M0136004 JKHGELEE_00011 9014 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -61C>T None
M0136005 JKHGELEE_00011 9170 3 Oral 0.30 protein_coding synonymous_variant LOW 96G>T Val32Val
M0136006 JKHGELEE_00011 9221 4 Oral 0.40 protein_coding synonymous_variant LOW 147T>C Ile49Ile
M0136007 JKHGELEE_00011 9443 4 Oral 0.40 protein_coding synonymous_variant LOW 369A>G Ala123Ala
M0136008 JKHGELEE_00023 22819 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -19A>G None
M0136009 JKHGELEE_00023 22900 4 Oral 0.40 protein_coding synonymous_variant LOW 63A>G Leu21Leu
M0136010 JKHGELEE_00024 23691 3 Oral 0.30 protein_coding synonymous_variant LOW 171T>C Ala57Ala
M0136011 JKHGELEE_00024 23700 3 Oral 0.30 protein_coding synonymous_variant LOW 180G>A Gln60Gln
M0136012 JKHGELEE_00024 23706 4 Oral 0.40 protein_coding synonymous_variant LOW 186T>A Gly62Gly
M0136013 JKHGELEE_00024 23718 3 Oral 0.30 protein_coding synonymous_variant LOW 198T>C Ile66Ile
M0136014 JKHGELEE_00024 23736 3 Oral 0.30 protein_coding synonymous_variant LOW 216C>T Arg72Arg
M0136015 JKHGELEE_00024 23865 5 Oral 0.50 protein_coding synonymous_variant LOW 345T>C Ile115Ile
M0136016 JKHGELEE_00024 23951 5 Oral 0.50 protein_coding missense_variant MODERATE 431T>C Val144Ala
M0136017 JKHGELEE_00024 24078 4 Oral 0.40 protein_coding synonymous_variant LOW 558T>A Gly186Gly
M0136018 JKHGELEE_00024 24091 3 Oral 0.30 protein_coding synonymous_variant LOW 571C>T Leu191Leu
M0136019 JKHGELEE_00025 24224 3 Oral 0.30 protein_coding synonymous_variant LOW 75A>T Thr25Thr
M0136020 JKHGELEE_00025 24251 3 Oral 0.30 protein_coding missense_variant MODERATE 102A>T Glu34Asp
M0136021 JKHGELEE_00025 24266 3 Oral 0.30 protein_coding synonymous_variant LOW 117C>T Val39Val
M0136022 JKHGELEE_00025 24308 3 Oral 0.30 protein_coding synonymous_variant LOW 159T>C Ile53Ile
M0136023 JKHGELEE_00025 24318 3 Oral 0.30 protein_coding missense_variant MODERATE 169A>G Lys57Glu
M0136024 JKHGELEE_00026 24400 3 Oral 0.30 protein_coding synonymous_variant LOW 12G>A Glu4Glu
M0136025 JKHGELEE_00026 24487 3 Oral 0.30 protein_coding synonymous_variant LOW 99A>G Val33Val
M0136026 JKHGELEE_00026 24677 3 Oral 0.30 protein_coding synonymous_variant LOW 289C>A Arg97Arg
M0136027 JKHGELEE_00026 24698 3 Oral 0.30 protein_coding missense_variant MODERATE 310G>A Glu104Lys
M0136028 JKHGELEE_00026 24863 3 Oral 0.30 protein_coding missense_variant MODERATE 475A>G Ile159Val
M0136029 JKHGELEE_00026 25171 4 Oral 0.40 protein_coding synonymous_variant LOW 783C>T Ala261Ala
M0136030 JKHGELEE_00026 25186 4 Oral 0.40 protein_coding synonymous_variant LOW 798C>T Ala266Ala
M0136031 JKHGELEE_00026 25222 4 Oral 0.40 protein_coding synonymous_variant LOW 834T>C Ser278Ser
M0136032 JKHGELEE_00026 25249 4 Oral 0.40 protein_coding synonymous_variant LOW 861C>T Pro287Pro
M0136033 JKHGELEE_00027 25287 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -113C>T None
M0136034 JKHGELEE_00027 25290 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -110T>G None
M0136035 JKHGELEE_00027 25385 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -15G>T None
M0136036 JKHGELEE_00027 25407 4 Oral 0.40 protein_coding missense_variant MODERATE 8T>C Leu3Ser
M0136037 JKHGELEE_00027 25431 4 Oral 0.40 protein_coding missense_variant MODERATE 32T>C Ile11Thr
M0136038 JKHGELEE_00028 26837 3 Oral 0.30 protein_coding synonymous_variant LOW 822A>T Ala274Ala
M0136039 JKHGELEE_00028 26886 3 Oral 0.30 protein_coding synonymous_variant LOW 871C>T Leu291Leu
M0136040 JKHGELEE_00028 27101 4 Oral 0.40 protein_coding synonymous_variant LOW 1086C>A Ser362Ser
M0136041 JKHGELEE_00028 27106 4 Oral 0.40 protein_coding missense_variant MODERATE 1091G>C Ser364Thr
M0136042 JKHGELEE_00028 27110 4 Oral 0.40 protein_coding synonymous_variant LOW 1095T>C Thr365Thr
M0136043 JKHGELEE_00028 27119 4 Oral 0.40 protein_coding synonymous_variant LOW 1104C>T Val368Val
M0136044 JKHGELEE_00028 27125 4 Oral 0.40 protein_coding synonymous_variant LOW 1110A>G Glu370Glu
M0136045 JKHGELEE_00028 27146 4 Oral 0.40 protein_coding synonymous_variant LOW 1131T>C Arg377Arg
M0136046 JKHGELEE_00028 27148 4 Oral 0.40 protein_coding missense_variant MODERATE 1133A>G Gln378Arg
M0136047 JKHGELEE_00032 27400 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -2666T>C None
M0136048 JKHGELEE_00032 27433 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -2633C>T None
M0136049 JKHGELEE_00003 2992 3 Oral 0.30 protein_coding synonymous_variant LOW 358C>T Leu120Leu
M0136050 JKHGELEE_00003 3081 3 Oral 0.30 protein_coding synonymous_variant LOW 447T>C Arg149Arg
M0136051 JKHGELEE_00003 3114 3 Oral 0.30 protein_coding synonymous_variant LOW 480T>C Gly160Gly
M0136052 JKHGELEE_00003 3189 3 Oral 0.30 protein_coding missense_variant MODERATE 555G>T Glu185Asp
M0136053 JKHGELEE_00003 3216 3 Oral 0.30 protein_coding synonymous_variant LOW 582T>A Val194Val
M0136054 JKHGELEE_00006 6063 3 Oral 0.30 protein_coding synonymous_variant LOW 1926A>G Pro642Pro
M0136055 JKHGELEE_00006 6132 3 Oral 0.30 protein_coding synonymous_variant LOW 1995T>C Tyr665Tyr
M0136056 JKHGELEE_00006 6141 3 Oral 0.30 protein_coding synonymous_variant LOW 2004T>C Cys668Cys
M0136057 JKHGELEE_00012 9872 4 Oral 0.40 protein_coding synonymous_variant LOW 81G>A Lys27Lys
M0136058 JKHGELEE_00012 10232 4 Oral 0.40 protein_coding synonymous_variant LOW 441A>G Ala147Ala
M0136059 JKHGELEE_00012 10241 3 Oral 0.30 protein_coding synonymous_variant LOW 450G>A Glu150Glu
M0136060 JKHGELEE_00012 10256 3 Oral 0.30 protein_coding synonymous_variant LOW 465C>T Ala155Ala
M0136061 JKHGELEE_00012 10272 3 Oral 0.30 protein_coding missense_variant MODERATE 481C>A Leu161Ile
M0136062 JKHGELEE_00012 10274 3 Oral 0.30 protein_coding synonymous_variant LOW 483T>C Leu161Leu
M0136063 JKHGELEE_00012 10277 4 Oral 0.40 protein_coding missense_variant MODERATE 486T>A Asn162Lys
M0136064 JKHGELEE_00012 10305 3 Oral 0.30 protein_coding missense_variant MODERATE 514C>T His172Tyr
M0136065 JKHGELEE_00012 10331 3 Oral 0.30 protein_coding synonymous_variant LOW 540C>T Gly180Gly
M0136066 JKHGELEE_00012 10352 3 Oral 0.30 protein_coding synonymous_variant LOW 561T>A Thr187Thr
M0136067 JKHGELEE_00012 10449 4 Oral 0.40 protein_coding synonymous_variant LOW 658C>T Leu220Leu
M0136068 JKHGELEE_00012 10451 4 Oral 0.40 protein_coding synonymous_variant LOW 660A>G Leu220Leu
M0136069 JKHGELEE_00012 10547 3 Oral 0.30 protein_coding synonymous_variant LOW 756C>T Asn252Asn
M0136070 JKHGELEE_00012 10559 4 Oral 0.40 protein_coding synonymous_variant LOW 768C>T Asp256Asp
M0136071 JKHGELEE_00012 10568 4 Oral 0.40 protein_coding synonymous_variant LOW 777T>C Gly259Gly
M0136072 JKHGELEE_00012 10574 4 Oral 0.40 protein_coding synonymous_variant LOW 783C>T Phe261Phe
M0136073 JKHGELEE_00012 10577 4 Oral 0.40 protein_coding synonymous_variant LOW 786C>T Asn262Asn
M0136074 JKHGELEE_00013 10714 3 Oral 0.30 protein_coding synonymous_variant LOW 81G>A Leu27Leu
M0136075 JKHGELEE_00013 10747 4 Oral 0.40 protein_coding synonymous_variant LOW 114T>C Pro38Pro
M0136076 JKHGELEE_00013 10804 4 Oral 0.40 protein_coding missense_variant MODERATE 171T>A Phe57Leu
M0136077 JKHGELEE_00013 10816 4 Oral 0.40 protein_coding synonymous_variant LOW 183T>C Gly61Gly
M0136078 JKHGELEE_00013 10846 4 Oral 0.40 protein_coding synonymous_variant LOW 213G>A Gly71Gly
M0136079 JKHGELEE_00013 10855 4 Oral 0.40 protein_coding synonymous_variant LOW 222T>G Gly74Gly
M0136080 JKHGELEE_00013 10864 3 Oral 0.30 protein_coding synonymous_variant LOW 231C>T Gly77Gly
M0136081 JKHGELEE_00013 10874 3 Oral 0.30 protein_coding missense_variant MODERATE 241A>G Thr81Ala
M0136082 JKHGELEE_00013 10876 4 Oral 0.40 protein_coding synonymous_variant LOW 243T>G Thr81Thr
M0136083 JKHGELEE_00013 10900 3 Oral 0.30 protein_coding synonymous_variant LOW 267G>T Ala89Ala
M0136084 JKHGELEE_00013 10918 3 Oral 0.30 protein_coding synonymous_variant LOW 285T>A Thr95Thr
M0136085 JKHGELEE_00013 10922 4 Oral 0.40 protein_coding missense_variant MODERATE 289G>A Gly97Ser
M0136086 JKHGELEE_00013 10948 4 Oral 0.40 protein_coding synonymous_variant LOW 315A>G Ala105Ala
M0136087 JKHGELEE_00013 11000 4 Oral 0.40 protein_coding missense_variant MODERATE 367A>G Ser123Gly
M0136088 JKHGELEE_00013 11032 4 Oral 0.40 protein_coding synonymous_variant LOW 399T>A Ser133Ser
M0136089 JKHGELEE_00013 11212 4 Oral 0.40 protein_coding synonymous_variant LOW 579T>A Ser193Ser
M0136090 JKHGELEE_00013 11214 4 Oral 0.40 protein_coding missense_variant MODERATE 581A>C Tyr194Ser
M0136091 JKHGELEE_00013 11350 4 Oral 0.40 protein_coding synonymous_variant LOW 717G>A Ala239Ala
M0136092 JKHGELEE_00013 11371 4 Oral 0.40 protein_coding synonymous_variant LOW 738T>A Thr246Thr
M0136093 JKHGELEE_00013 11449 3 Oral 0.30 protein_coding synonymous_variant LOW 816C>G Arg272Arg
M0136094 JKHGELEE_00013 11751 3 Oral 0.30 protein_coding missense_variant MODERATE 1118C>A Thr373Asn
M0136095 JKHGELEE_00013 11755 4 Oral 0.40 protein_coding synonymous_variant LOW 1122T>A Arg374Arg
M0136096 JKHGELEE_00014 12026 3 Oral 0.30 protein_coding missense_variant MODERATE 19C>A Pro7Thr
M0136097 JKHGELEE_00014 12100 3 Oral 0.30 protein_coding synonymous_variant LOW 93C>T Asp31Asp
M0136098 JKHGELEE_00014 12112 3 Oral 0.30 protein_coding synonymous_variant LOW 105G>A Arg35Arg
M0136099 JKHGELEE_00014 12142 3 Oral 0.30 protein_coding synonymous_variant LOW 135C>G Arg45Arg
M0136100 JKHGELEE_00014 12184 3 Oral 0.30 protein_coding synonymous_variant LOW 177A>G Arg59Arg
M0136101 JKHGELEE_00014 12199 3 Oral 0.30 protein_coding synonymous_variant LOW 192G>A Arg64Arg
M0136102 JKHGELEE_00014 12286 4 Oral 0.40 protein_coding synonymous_variant LOW 279T>C Ser93Ser
M0136103 JKHGELEE_00014 12389 3 Oral 0.30 protein_coding missense_variant MODERATE 382T>A Ser128Thr
M0136104 JKHGELEE_00014 12459 3 Oral 0.30 protein_coding missense_variant MODERATE 452A>C Asp151Ala
M0136105 JKHGELEE_00014 12470 4 Oral 0.40 protein_coding missense_variant MODERATE 463T>C Phe155Leu
M0136106 JKHGELEE_00014 12529 3 Oral 0.30 protein_coding synonymous_variant LOW 522G>A Leu174Leu
M0136107 JKHGELEE_00014 12610 4 Oral 0.40 protein_coding synonymous_variant LOW 603A>T Ala201Ala
M0136108 JKHGELEE_00014 12691 3 Oral 0.30 protein_coding synonymous_variant LOW 684T>C Ser228Ser
M0136109 JKHGELEE_00015 13396 4 Oral 0.40 protein_coding synonymous_variant LOW 252G>A Ser84Ser
M0136110 JKHGELEE_00016 13610 3 Oral 0.30 protein_coding synonymous_variant LOW 27A>G Leu9Leu
M0136111 JKHGELEE_00016 13748 3 Oral 0.30 protein_coding synonymous_variant LOW 165A>G Arg55Arg
M0136112 JKHGELEE_00016 14265 4 Oral 0.40 protein_coding missense_variant MODERATE 682A>G Ile228Val
M0136113 JKHGELEE_00016 14373 4 Oral 0.40 protein_coding missense_variant MODERATE 790A>G Thr264Ala
M0136114 JKHGELEE_00016 14918 4 Oral 0.40 protein_coding synonymous_variant LOW 1335T>C Val445Val
M0136115 JKHGELEE_00016 14921 4 Oral 0.40 protein_coding synonymous_variant LOW 1338T>G Ser446Ser
M0136116 JKHGELEE_00016 15023 3 Oral 0.30 protein_coding synonymous_variant LOW 1440T>C Asn480Asn
M0136117 JKHGELEE_00016 15029 3 Oral 0.30 protein_coding synonymous_variant LOW 1446G>C Gly482Gly
M0136118 JKHGELEE_00016 15032 3 Oral 0.30 protein_coding synonymous_variant LOW 1449C>T Cys483Cys
M0136119 JKHGELEE_00016 15041 3 Oral 0.30 protein_coding synonymous_variant LOW 1458T>C Val486Val
M0136120 JKHGELEE_00016 15147 3 Oral 0.30 protein_coding synonymous_variant LOW 1564A>C Arg522Arg
M0136121 JKHGELEE_00016 15329 4 Oral 0.40 protein_coding synonymous_variant LOW 1746A>G Pro582Pro
M0136122 JKHGELEE_00017 16028 3 Oral 0.30 protein_coding synonymous_variant LOW 369T>C Gly123Gly
M0136123 JKHGELEE_00017 16085 3 Oral 0.30 protein_coding synonymous_variant LOW 426C>T Leu142Leu
M0136124 JKHGELEE_00017 16109 3 Oral 0.30 protein_coding synonymous_variant LOW 450A>G Pro150Pro
M0136125 JKHGELEE_00017 17336 3 Oral 0.30 protein_coding synonymous_variant LOW 1677A>G Glu559Glu
M0136126 JKHGELEE_00017 18068 4 Oral 0.40 protein_coding synonymous_variant LOW 2409T>C Ala803Ala
M0136127 JKHGELEE_00019 19092 3 Oral 0.30 protein_coding missense_variant MODERATE 591G>T Leu197Phe
M0136128 JKHGELEE_00019 19284 3 Oral 0.30 protein_coding synonymous_variant LOW 783A>C Ala261Ala
M0136129 JKHGELEE_00019 19401 3 Oral 0.30 protein_coding synonymous_variant LOW 900G>A Glu300Glu
M0136130 JKHGELEE_00019 19695 3 Oral 0.30 protein_coding synonymous_variant LOW 1194A>T Leu398Leu
M0136131 JKHGELEE_00019 19708 4 Oral 0.40 protein_coding missense_variant MODERATE 1207A>G Thr403Ala
M0136132 JKHGELEE_00020 19759 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -51T>A None
M0136133 JKHGELEE_00021 20683 3 Oral 0.30 protein_coding synonymous_variant LOW 318T>C Ala106Ala
M0136134 JKHGELEE_00024 23679 3 Oral 0.30 protein_coding synonymous_variant LOW 159T>C Asn53Asn
M0136135 JKHGELEE_00024 23808 4 Oral 0.40 protein_coding synonymous_variant LOW 288T>C Ser96Ser
M0136136 JKHGELEE_00026 24967 3 Oral 0.30 protein_coding synonymous_variant LOW 579T>C Ala193Ala
M0136137 JKHGELEE_00026 25100 3 Oral 0.30 protein_coding missense_variant MODERATE 712A>G Ile238Val
M0136138 JKHGELEE_00026 25148 3 Oral 0.30 protein_coding missense_variant MODERATE 760G>A Glu254Lys
M0136139 JKHGELEE_00026 25152 3 Oral 0.30 protein_coding missense_variant MODERATE 764G>A Arg255His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JKHGELEE_00003 UTG72248.1|GH23 100 6.98e-152 1 212 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term