Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3356
  Reference Plasmid   MGYG000298844__MGYG000298844_98
  Reference Plasmid Size   6689
  Reference Plasmid GC Content   0.35
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0136606 OLAGOINO_00003 2674 3 Oral 0.75 protein_coding synonymous_variant LOW 258A>G Lys86Lys
M0136607 OLAGOINO_00003 2687 3 Oral 0.75 protein_coding missense_variant MODERATE 271A>G Ile91Val
M0136608 OLAGOINO_00003 3409 3 Oral 0.75 protein_coding synonymous_variant LOW 993C>T Gly331Gly
M0136609 OLAGOINO_00003 3613 3 Oral 0.75 protein_coding synonymous_variant LOW 1197T>C Tyr399Tyr
M0136610 OLAGOINO_00003 3634 3 Oral 0.75 protein_coding synonymous_variant LOW 1218T>C Gly406Gly
M0136611 OLAGOINO_00003 3643 3 Oral 0.75 protein_coding synonymous_variant LOW 1227C>T Thr409Thr
M0136612 OLAGOINO_00002 1916 3 Oral 0.75 protein_coding missense_variant MODERATE 1185G>T Lys395Asn
M0136613 OLAGOINO_00002 1934 3 Oral 0.75 protein_coding synonymous_variant LOW 1203A>T Thr401Thr
M0136614 OLAGOINO_00002 1937 3 Oral 0.75 protein_coding synonymous_variant LOW 1206T>A Ile402Ile
M0136615 OLAGOINO_00002 2021 3 Oral 0.75 protein_coding synonymous_variant LOW 1290C>T Cys430Cys
M0136616 OLAGOINO_00002 2042 3 Oral 0.75 protein_coding synonymous_variant LOW 1311A>G Glu437Glu
M0136617 OLAGOINO_00002 2130 3 Oral 0.75 protein_coding missense_variant MODERATE 1399A>G Ser467Gly
M0136618 OLAGOINO_00002 2178 3 Oral 0.75 protein_coding missense_variant MODERATE 1447G>A Asp483Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OLAGOINO_00002 AGT63953.1|GT3 93.6 0 1 549 1 1
OLAGOINO_00003 AGT63952.1|GT35 97.9 0 1 853 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term