Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3357
  Reference Plasmid   MGYG000298845__MGYG000298845_84
  Reference Plasmid Size   102257
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0136619 IHDMMIEA_00002 947 3 Oral 0.60 protein_coding synonymous_variant LOW 126A>G Lys42Lys
M0136620 IHDMMIEA_00003 1656 3 Oral 0.60 protein_coding synonymous_variant LOW 420T>C Ile140Ile
M0136621 IHDMMIEA_00003 1711 3 Oral 0.60 protein_coding missense_variant MODERATE 475A>C Lys159Gln
M0136622 IHDMMIEA_00003 1774 3 Oral 0.60 protein_coding missense_variant MODERATE 538A>G Thr180Ala
M0136623 IHDMMIEA_00003 1775 3 Oral 0.60 protein_coding missense_variant MODERATE 539C>A Thr180Asn
M0136624 IHDMMIEA_00003 1776 3 Oral 0.60 protein_coding synonymous_variant LOW 540T>C Thr180Thr
M0136625 IHDMMIEA_00003 1797 3 Oral 0.60 protein_coding missense_variant MODERATE 561T>A Ser187Arg
M0136626 IHDMMIEA_00003 1808 3 Oral 0.60 protein_coding missense_variant MODERATE 572T>C Ile191Thr
M0136627 IHDMMIEA_00003 1812 3 Oral 0.60 protein_coding synonymous_variant LOW 576A>G Gly192Gly
M0136628 IHDMMIEA_00003 1860 3 Oral 0.60 protein_coding missense_variant MODERATE 624G>T Glu208Asp
M0136629 IHDMMIEA_00003 1863 3 Oral 0.60 protein_coding synonymous_variant LOW 627C>T Arg209Arg
M0136630 IHDMMIEA_00003 1868 3 Oral 0.60 protein_coding missense_variant MODERATE 632G>A Arg211Lys
M0136631 IHDMMIEA_00003 1875 3 Oral 0.60 protein_coding synonymous_variant LOW 639A>G Lys213Lys
M0136632 IHDMMIEA_00003 1879 3 Oral 0.60 protein_coding missense_variant MODERATE 643G>A Gly215Ser
M0136633 IHDMMIEA_00003 1963 4 Oral 0.80 protein_coding synonymous_variant LOW 727C>T Leu243Leu
M0136634 IHDMMIEA_00003 1985 3 Oral 0.60 protein_coding missense_variant MODERATE 749G>A Gly250Asp
M0136635 IHDMMIEA_00003 2006 4 Oral 0.80 protein_coding missense_variant MODERATE 770A>T Lys257Ile
M0136636 IHDMMIEA_00003 2022 3 Oral 0.60 protein_coding synonymous_variant LOW 786A>T Ile262Ile
M0136637 IHDMMIEA_00003 2035 3 Oral 0.60 protein_coding missense_variant MODERATE 799A>G Lys267Glu
M0136638 IHDMMIEA_00003 2049 3 Oral 0.60 protein_coding synonymous_variant LOW 813T>C Thr271Thr
M0136639 IHDMMIEA_00003 2052 3 Oral 0.60 protein_coding synonymous_variant LOW 816A>G Lys272Lys
M0136640 IHDMMIEA_00003 2055 3 Oral 0.60 protein_coding missense_variant MODERATE 819T>A Asp273Glu
M0136641 IHDMMIEA_00003 2057 3 Oral 0.60 protein_coding missense_variant MODERATE 821C>T Ala274Val
M0136642 IHDMMIEA_00003 2058 3 Oral 0.60 protein_coding synonymous_variant LOW 822T>A Ala274Ala
M0136643 IHDMMIEA_00003 2067 3 Oral 0.60 protein_coding synonymous_variant LOW 831A>G Gln277Gln
M0136644 IHDMMIEA_00007 8341 3 Oral 0.60 protein_coding missense_variant MODERATE 386G>A Arg129Gln
M0136645 IHDMMIEA_00007 8371 3 Oral 0.60 protein_coding missense_variant MODERATE 416G>C Gly139Ala
M0136646 IHDMMIEA_00007 8373 3 Oral 0.60 protein_coding missense_variant MODERATE 418G>A Ala140Thr
M0136647 IHDMMIEA_00007 8612 3 Oral 0.60 protein_coding synonymous_variant LOW 657G>A Val219Val
M0136648 IHDMMIEA_00007 8630 3 Oral 0.60 protein_coding synonymous_variant LOW 675G>A Gly225Gly
M0136649 IHDMMIEA_00007 8652 3 Oral 0.60 protein_coding missense_variant MODERATE 697G>A Asp233Asn
M0136650 IHDMMIEA_00007 8660 3 Oral 0.60 protein_coding synonymous_variant LOW 705A>G Lys235Lys
M0136651 IHDMMIEA_00007 8669 3 Oral 0.60 protein_coding synonymous_variant LOW 714C>T Tyr238Tyr
M0136652 IHDMMIEA_00007 8678 3 Oral 0.60 protein_coding synonymous_variant LOW 723T>A Thr241Thr
M0136653 IHDMMIEA_00007 8705 3 Oral 0.60 protein_coding synonymous_variant LOW 750T>A Ser250Ser
M0136654 IHDMMIEA_00007 8717 3 Oral 0.60 protein_coding synonymous_variant LOW 762T>A Leu254Leu
M0136655 IHDMMIEA_00007 8723 3 Oral 0.60 protein_coding synonymous_variant LOW 768T>C Ile256Ile
M0136656 IHDMMIEA_00007 8730 3 Oral 0.60 protein_coding missense_variant MODERATE 775A>G Ser259Gly
M0136657 IHDMMIEA_00007 8762 3 Oral 0.60 protein_coding synonymous_variant LOW 807A>G Glu269Glu
M0136658 IHDMMIEA_00007 8783 3 Oral 0.60 protein_coding synonymous_variant LOW 828T>C Phe276Phe
M0136659 IHDMMIEA_00007 8792 3 Oral 0.60 protein_coding synonymous_variant LOW 837G>A Gly279Gly
M0136660 IHDMMIEA_00007 8793 3 Oral 0.60 protein_coding missense_variant MODERATE 838A>G Ile280Val
M0136661 IHDMMIEA_00007 8795 3 Oral 0.60 protein_coding synonymous_variant LOW 840A>C Ile280Ile
M0136662 IHDMMIEA_00008 9539 3 Oral 0.60 protein_coding synonymous_variant LOW 51A>G Thr17Thr
M0136663 IHDMMIEA_00008 9566 3 Oral 0.60 protein_coding synonymous_variant LOW 78T>C Pro26Pro
M0136664 IHDMMIEA_00010 11853 3 Oral 0.60 protein_coding synonymous_variant LOW 483T>C Val161Val
M0136665 IHDMMIEA_00010 11883 3 Oral 0.60 protein_coding synonymous_variant LOW 513A>G Leu171Leu
M0136666 IHDMMIEA_00010 11895 3 Oral 0.60 protein_coding synonymous_variant LOW 525C>T Asp175Asp
M0136667 IHDMMIEA_00010 11904 3 Oral 0.60 protein_coding synonymous_variant LOW 534T>A Ile178Ile
M0136668 IHDMMIEA_00010 12177 3 Oral 0.60 protein_coding synonymous_variant LOW 807C>A Val269Val
M0136669 IHDMMIEA_00012 13416 3 Oral 0.60 protein_coding synonymous_variant LOW 768A>G Lys256Lys
M0136670 IHDMMIEA_00012 13434 3 Oral 0.60 protein_coding synonymous_variant LOW 750G>A Ser250Ser
M0136671 IHDMMIEA_00012 13485 3 Oral 0.60 protein_coding synonymous_variant LOW 699A>G Leu233Leu
M0136672 IHDMMIEA_00012 13488 3 Oral 0.60 protein_coding synonymous_variant LOW 696C>T Asp232Asp
M0136673 IHDMMIEA_00012 13491 3 Oral 0.60 protein_coding synonymous_variant LOW 693A>C Gly231Gly
M0136674 IHDMMIEA_00012 13578 3 Oral 0.60 protein_coding synonymous_variant LOW 606A>T Leu202Leu
M0136675 IHDMMIEA_00012 13581 3 Oral 0.60 protein_coding synonymous_variant LOW 603G>A Glu201Glu
M0136676 IHDMMIEA_00012 13599 3 Oral 0.60 protein_coding synonymous_variant LOW 585G>A Arg195Arg
M0136677 IHDMMIEA_00017 20504 3 Oral 0.60 protein_coding synonymous_variant LOW 2016C>T Gly672Gly
M0136678 IHDMMIEA_00023 26411 3 Oral 0.60 protein_coding synonymous_variant LOW 468T>G Ala156Ala
M0136679 IHDMMIEA_00028 32069 4 Oral 0.80 protein_coding missense_variant MODERATE 661A>G Lys221Glu
M0136680 IHDMMIEA_00028 32111 4 Oral 0.80 protein_coding missense_variant MODERATE 703G>A Ala235Thr
M0136681 IHDMMIEA_00029 32460 4 Oral 0.80 protein_coding synonymous_variant LOW 228A>C Ile76Ile
M0136682 IHDMMIEA_00029 32481 4 Oral 0.80 protein_coding synonymous_variant LOW 249T>G Val83Val
M0136683 IHDMMIEA_00029 32523 3 Oral 0.60 protein_coding synonymous_variant LOW 291A>G Val97Val
M0136684 IHDMMIEA_00029 32574 4 Oral 0.80 protein_coding synonymous_variant LOW 342A>G Lys114Lys
M0136685 IHDMMIEA_00029 33162 3 Oral 0.60 protein_coding synonymous_variant LOW 930A>G Glu310Glu
M0136686 IHDMMIEA_00029 33216 4 Oral 0.80 protein_coding synonymous_variant LOW 984T>A Pro328Pro
M0136687 IHDMMIEA_00029 33231 4 Oral 0.80 protein_coding synonymous_variant LOW 999T>C Asp333Asp
M0136688 IHDMMIEA_00030 34087 3 Oral 0.60 protein_coding synonymous_variant LOW 408A>G Ser136Ser
M0136689 IHDMMIEA_00030 34129 3 Oral 0.60 protein_coding synonymous_variant LOW 450T>A Gly150Gly
M0136690 IHDMMIEA_00030 34140 3 Oral 0.60 protein_coding missense_variant MODERATE 461T>C Ile154Thr
M0136691 IHDMMIEA_00030 34156 3 Oral 0.60 protein_coding synonymous_variant LOW 477A>C Gly159Gly
M0136692 IHDMMIEA_00030 34163 3 Oral 0.60 protein_coding missense_variant MODERATE 484C>T Pro162Ser
M0136693 IHDMMIEA_00030 34207 3 Oral 0.60 protein_coding synonymous_variant LOW 528G>A Lys176Lys
M0136694 IHDMMIEA_00030 34219 3 Oral 0.60 protein_coding synonymous_variant LOW 540T>C Ile180Ile
M0136695 IHDMMIEA_00030 34225 3 Oral 0.60 protein_coding synonymous_variant LOW 546T>C Asp182Asp
M0136696 IHDMMIEA_00030 34231 3 Oral 0.60 protein_coding synonymous_variant LOW 552A>G Lys184Lys
M0136697 IHDMMIEA_00030 34234 3 Oral 0.60 protein_coding synonymous_variant LOW 555A>G Gln185Gln
M0136698 IHDMMIEA_00030 34235 3 Oral 0.60 protein_coding synonymous_variant LOW 556C>T Leu186Leu
M0136699 IHDMMIEA_00030 34243 3 Oral 0.60 protein_coding synonymous_variant LOW 564G>T Gly188Gly
M0136700 IHDMMIEA_00030 34291 4 Oral 0.80 protein_coding synonymous_variant LOW 612T>C Asn204Asn
M0136701 IHDMMIEA_00030 35445 4 Oral 0.80 protein_coding missense_variant MODERATE 1766A>G Gln589Arg
M0136702 IHDMMIEA_00030 35452 4 Oral 0.80 protein_coding synonymous_variant LOW 1773C>T Arg591Arg
M0136703 IHDMMIEA_00030 35457 4 Oral 0.80 protein_coding missense_variant MODERATE 1778G>A Ser593Asn
M0136704 IHDMMIEA_00030 35476 4 Oral 0.80 protein_coding synonymous_variant LOW 1797T>A Val599Val
M0136705 IHDMMIEA_00032 37494 4 Oral 0.80 protein_coding synonymous_variant LOW 57T>C Asp19Asp
M0136706 IHDMMIEA_00033 38801 3 Oral 0.60 protein_coding synonymous_variant LOW 387C>T Ile129Ile
M0136707 IHDMMIEA_00033 38822 4 Oral 0.80 protein_coding synonymous_variant LOW 408T>A Val136Val
M0136708 IHDMMIEA_00033 38828 4 Oral 0.80 protein_coding synonymous_variant LOW 414C>T Arg138Arg
M0136709 IHDMMIEA_00033 38834 4 Oral 0.80 protein_coding synonymous_variant LOW 420T>C Tyr140Tyr
M0136710 IHDMMIEA_00033 38840 4 Oral 0.80 protein_coding synonymous_variant LOW 426C>T Ser142Ser
M0136711 IHDMMIEA_00038 40969 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -2597A>C None
M0136712 IHDMMIEA_00035 41298 3 Oral 0.60 protein_coding synonymous_variant LOW 1317C>T Leu439Leu
M0136713 IHDMMIEA_00042 49254 4 Oral 0.80 protein_coding synonymous_variant LOW 42A>T Val14Val
M0136714 IHDMMIEA_00042 49303 4 Oral 0.80 protein_coding missense_variant MODERATE 91G>A Gly31Ser
M0136715 IHDMMIEA_00042 49304 4 Oral 0.80 protein_coding missense_variant MODERATE 92G>A Gly31Asp
M0136716 IHDMMIEA_00042 49307 4 Oral 0.80 protein_coding missense_variant MODERATE 95G>A Ser32Asn
M0136717 IHDMMIEA_00042 49331 4 Oral 0.80 protein_coding missense_variant MODERATE 119C>G Thr40Ser
M0136718 IHDMMIEA_00042 49334 4 Oral 0.80 protein_coding missense_variant MODERATE 122C>A Ala41Asp
M0136719 IHDMMIEA_00042 49350 3 Oral 0.60 protein_coding synonymous_variant LOW 138T>C Tyr46Tyr
M0136720 IHDMMIEA_00043 51502 4 Oral 0.80 protein_coding synonymous_variant LOW 540T>A Val180Val
M0136721 IHDMMIEA_00045 53133 4 Oral 0.80 protein_coding synonymous_variant LOW 885A>G Gly295Gly
M0136722 IHDMMIEA_00045 53196 4 Oral 0.80 protein_coding synonymous_variant LOW 822A>T Ser274Ser
M0136723 IHDMMIEA_00045 53268 4 Oral 0.80 protein_coding synonymous_variant LOW 750G>A Leu250Leu
M0136724 IHDMMIEA_00047 55960 3 Oral 0.60 protein_coding synonymous_variant LOW 852C>T Thr284Thr
M0136725 IHDMMIEA_00047 55993 3 Oral 0.60 protein_coding synonymous_variant LOW 885T>C Arg295Arg
M0136726 IHDMMIEA_00027 30364 3 Oral 0.60 protein_coding missense_variant MODERATE 121C>T Leu41Phe
M0136727 IHDMMIEA_00027 30546 3 Oral 0.60 protein_coding synonymous_variant LOW 303T>A Thr101Thr
M0136728 IHDMMIEA_00027 30549 3 Oral 0.60 protein_coding synonymous_variant LOW 306C>T Asp102Asp
M0136729 IHDMMIEA_00027 30588 3 Oral 0.60 protein_coding synonymous_variant LOW 345A>G Leu115Leu
M0136730 IHDMMIEA_00027 30741 3 Oral 0.60 protein_coding synonymous_variant LOW 498T>C Pro166Pro
M0136731 IHDMMIEA_00027 30877 3 Oral 0.60 protein_coding missense_variant MODERATE 634G>T Ala212Ser
M0136732 IHDMMIEA_00027 31005 3 Oral 0.60 protein_coding synonymous_variant LOW 762A>T Thr254Thr
M0136733 IHDMMIEA_00027 31062 3 Oral 0.60 protein_coding missense_variant MODERATE 819T>G Asn273Lys
M0136734 IHDMMIEA_00028 31577 3 Oral 0.60 protein_coding synonymous_variant LOW 169T>C Leu57Leu
M0136735 IHDMMIEA_00028 31578 3 Oral 0.60 protein_coding missense_variant MODERATE 170T>C Leu57Ser
M0136736 IHDMMIEA_00028 31585 3 Oral 0.60 protein_coding synonymous_variant LOW 177C>A Thr59Thr
M0136737 IHDMMIEA_00028 32148 3 Oral 0.60 protein_coding missense_variant MODERATE 740A>T Asn247Ile
M0136738 IHDMMIEA_00029 32355 3 Oral 0.60 protein_coding synonymous_variant LOW 123C>T Pro41Pro
M0136739 IHDMMIEA_00029 32382 3 Oral 0.60 protein_coding synonymous_variant LOW 150G>A Lys50Lys
M0136740 IHDMMIEA_00029 32436 3 Oral 0.60 protein_coding synonymous_variant LOW 204A>T Val68Val
M0136741 IHDMMIEA_00029 32763 3 Oral 0.60 protein_coding synonymous_variant LOW 531C>T Asp177Asp
M0136742 IHDMMIEA_00029 32772 3 Oral 0.60 protein_coding synonymous_variant LOW 540T>C Tyr180Tyr
M0136743 IHDMMIEA_00029 32775 3 Oral 0.60 protein_coding synonymous_variant LOW 543T>C His181His
M0136744 IHDMMIEA_00029 32781 3 Oral 0.60 protein_coding synonymous_variant LOW 549A>G Thr183Thr
M0136745 IHDMMIEA_00029 32796 3 Oral 0.60 protein_coding missense_variant MODERATE 564G>C Glu188Asp
M0136746 IHDMMIEA_00029 32976 3 Oral 0.60 protein_coding synonymous_variant LOW 744T>A Thr248Thr
M0136747 IHDMMIEA_00029 32979 3 Oral 0.60 protein_coding synonymous_variant LOW 747T>A Gly249Gly
M0136748 IHDMMIEA_00030 35947 3 Oral 0.60 protein_coding synonymous_variant LOW 2268T>G Thr756Thr
M0136749 IHDMMIEA_00030 35959 3 Oral 0.60 protein_coding synonymous_variant LOW 2280T>C Ile760Ile
M0136750 IHDMMIEA_00030 35965 3 Oral 0.60 protein_coding synonymous_variant LOW 2286G>A Lys762Lys
M0136751 IHDMMIEA_00030 35980 3 Oral 0.60 protein_coding synonymous_variant LOW 2301T>A Gly767Gly
M0136752 IHDMMIEA_00030 35983 3 Oral 0.60 protein_coding synonymous_variant LOW 2304C>T Ser768Ser
M0136753 IHDMMIEA_00030 35989 3 Oral 0.60 protein_coding synonymous_variant LOW 2310C>A Gly770Gly
M0136754 IHDMMIEA_00030 35992 3 Oral 0.60 protein_coding synonymous_variant LOW 2313C>T His771His
M0136755 IHDMMIEA_00030 35993 3 Oral 0.60 protein_coding missense_variant MODERATE 2314A>G Ile772Val
M0136756 IHDMMIEA_00030 36052 3 Oral 0.60 protein_coding synonymous_variant LOW 2373C>T Ile791Ile
M0136757 IHDMMIEA_00030 36064 3 Oral 0.60 protein_coding synonymous_variant LOW 2385A>G Val795Val
M0136758 IHDMMIEA_00030 36070 3 Oral 0.60 protein_coding synonymous_variant LOW 2391A>G Thr797Thr
M0136759 IHDMMIEA_00030 36079 3 Oral 0.60 protein_coding synonymous_variant LOW 2400T>C Phe800Phe
M0136760 IHDMMIEA_00030 36082 3 Oral 0.60 protein_coding synonymous_variant LOW 2403A>G Glu801Glu
M0136761 IHDMMIEA_00030 36094 3 Oral 0.60 protein_coding synonymous_variant LOW 2415G>A Thr805Thr
M0136762 IHDMMIEA_00030 36103 3 Oral 0.60 protein_coding synonymous_variant LOW 2424T>C Leu808Leu
M0136763 IHDMMIEA_00030 36235 3 Oral 0.60 protein_coding synonymous_variant LOW 2556T>A Gly852Gly
M0136764 IHDMMIEA_00030 36340 3 Oral 0.60 protein_coding synonymous_variant LOW 2661C>T Asp887Asp
M0136765 IHDMMIEA_00030 36379 3 Oral 0.60 protein_coding synonymous_variant LOW 2700T>C Phe900Phe
M0136766 IHDMMIEA_00030 36412 3 Oral 0.60 protein_coding synonymous_variant LOW 2733T>A Leu911Leu
M0136767 IHDMMIEA_00030 36436 3 Oral 0.60 protein_coding synonymous_variant LOW 2757A>C Ile919Ile
M0136768 IHDMMIEA_00031 36480 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -31T>C None
M0136769 IHDMMIEA_00031 36492 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -19G>A None
M0136770 IHDMMIEA_00031 36493 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -18T>A None
M0136771 IHDMMIEA_00031 36504 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -7A>G None
M0136772 IHDMMIEA_00031 36508 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3G>A None
M0136773 IHDMMIEA_00031 36523 3 Oral 0.60 protein_coding missense_variant MODERATE 13A>G Ile5Val
M0136774 IHDMMIEA_00031 36528 3 Oral 0.60 protein_coding synonymous_variant LOW 18C>T Leu6Leu
M0136775 IHDMMIEA_00031 36543 3 Oral 0.60 protein_coding synonymous_variant LOW 33G>A Gly11Gly
M0136776 IHDMMIEA_00031 36586 3 Oral 0.60 protein_coding missense_variant MODERATE 76G>T Val26Leu
M0136777 IHDMMIEA_00031 36630 3 Oral 0.60 protein_coding synonymous_variant LOW 120T>C Val40Val
M0136778 IHDMMIEA_00032 38124 3 Oral 0.60 protein_coding synonymous_variant LOW 687A>G Val229Val
M0136779 IHDMMIEA_00032 38130 3 Oral 0.60 protein_coding synonymous_variant LOW 693T>A Ala231Ala
M0136780 IHDMMIEA_00032 38139 3 Oral 0.60 protein_coding synonymous_variant LOW 702T>C His234His
M0136781 IHDMMIEA_00032 38151 3 Oral 0.60 protein_coding synonymous_variant LOW 714A>T Ala238Ala
M0136782 IHDMMIEA_00032 38166 3 Oral 0.60 protein_coding synonymous_variant LOW 729C>T Asn243Asn
M0136783 IHDMMIEA_00032 38169 3 Oral 0.60 protein_coding synonymous_variant LOW 732C>T Leu244Leu
M0136784 IHDMMIEA_00032 38181 3 Oral 0.60 protein_coding synonymous_variant LOW 744C>T Leu248Leu
M0136785 IHDMMIEA_00033 38543 3 Oral 0.60 protein_coding synonymous_variant LOW 129C>G Val43Val
M0136786 IHDMMIEA_00033 38630 3 Oral 0.60 protein_coding synonymous_variant LOW 216C>T Phe72Phe
M0136787 IHDMMIEA_00033 38879 3 Oral 0.60 protein_coding synonymous_variant LOW 465C>T Gly155Gly
M0136788 IHDMMIEA_00033 38894 3 Oral 0.60 protein_coding synonymous_variant LOW 480A>G Lys160Lys
M0136789 IHDMMIEA_00033 38937 3 Oral 0.60 protein_coding missense_variant MODERATE 523G>C Glu175Gln
M0136790 IHDMMIEA_00033 39023 3 Oral 0.60 protein_coding synonymous_variant LOW 609T>C Asn203Asn
M0136791 IHDMMIEA_00033 39053 3 Oral 0.60 protein_coding synonymous_variant LOW 639T>C Asn213Asn
M0136792 IHDMMIEA_00033 39089 3 Oral 0.60 protein_coding synonymous_variant LOW 675T>A Val225Val
M0136793 IHDMMIEA_00033 39132 3 Oral 0.60 protein_coding missense_variant MODERATE 718A>G Ile240Val
M0136794 IHDMMIEA_00033 39178 3 Oral 0.60 protein_coding missense_variant MODERATE 764T>C Val255Ala
M0136795 IHDMMIEA_00033 39240 3 Oral 0.60 protein_coding missense_variant MODERATE 826G>A Ala276Thr
M0136796 IHDMMIEA_00033 39245 3 Oral 0.60 protein_coding synonymous_variant LOW 831T>C Tyr277Tyr
M0136797 IHDMMIEA_00033 39275 3 Oral 0.60 protein_coding synonymous_variant LOW 861A>T Pro287Pro
M0136798 IHDMMIEA_00033 39293 3 Oral 0.60 protein_coding synonymous_variant LOW 879C>T Gly293Gly
M0136799 IHDMMIEA_00033 39517 3 Oral 0.60 protein_coding missense_variant MODERATE 1103C>G Ala368Gly
M0136800 IHDMMIEA_00033 39788 3 Oral 0.60 protein_coding synonymous_variant LOW 1374A>G Val458Val
M0136801 IHDMMIEA_00033 39881 3 Oral 0.60 protein_coding synonymous_variant LOW 1467T>C Asp489Asp
M0136802 IHDMMIEA_00033 39887 3 Oral 0.60 protein_coding synonymous_variant LOW 1473G>A Glu491Glu
M0136803 IHDMMIEA_00033 39923 3 Oral 0.60 protein_coding synonymous_variant LOW 1509G>A Arg503Arg
M0136804 IHDMMIEA_00033 39951 3 Oral 0.60 protein_coding missense_variant MODERATE 1537T>C Tyr513His
M0136805 IHDMMIEA_00034 40220 3 Oral 0.60 protein_coding synonymous_variant LOW 108T>C Ser36Ser
M0136806 IHDMMIEA_00034 40277 3 Oral 0.60 protein_coding synonymous_variant LOW 165A>G Lys55Lys
M0136807 IHDMMIEA_00034 40344 3 Oral 0.60 protein_coding missense_variant MODERATE 232A>G Ile78Val
M0136808 IHDMMIEA_00034 40421 3 Oral 0.60 protein_coding synonymous_variant LOW 309A>G Glu103Glu
M0136809 IHDMMIEA_00034 40490 3 Oral 0.60 protein_coding synonymous_variant LOW 378T>C Thr126Thr
M0136810 IHDMMIEA_00034 40493 3 Oral 0.60 protein_coding synonymous_variant LOW 381C>T Ala127Ala
M0136811 IHDMMIEA_00034 40535 3 Oral 0.60 protein_coding synonymous_variant LOW 423G>A Glu141Glu
M0136812 IHDMMIEA_00034 40544 3 Oral 0.60 protein_coding synonymous_variant LOW 432C>T Arg144Arg
M0136813 IHDMMIEA_00038 40614 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2952T>C None
M0136814 IHDMMIEA_00038 40642 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2924C>T None
M0136815 IHDMMIEA_00038 40653 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2913A>G None
M0136816 IHDMMIEA_00035 41568 3 Oral 0.60 protein_coding synonymous_variant LOW 1047C>T Asp349Asp
M0136817 IHDMMIEA_00035 41595 3 Oral 0.60 protein_coding synonymous_variant LOW 1020G>T Ala340Ala
M0136818 IHDMMIEA_00035 41673 3 Oral 0.60 protein_coding synonymous_variant LOW 942T>C Ile314Ile
M0136819 IHDMMIEA_00035 41703 3 Oral 0.60 protein_coding synonymous_variant LOW 912C>T Ile304Ile
M0136820 IHDMMIEA_00035 41706 3 Oral 0.60 protein_coding synonymous_variant LOW 909T>C Thr303Thr
M0136821 IHDMMIEA_00035 41721 3 Oral 0.60 protein_coding synonymous_variant LOW 894C>A Ser298Ser
M0136822 IHDMMIEA_00035 41763 3 Oral 0.60 protein_coding synonymous_variant LOW 852A>G Val284Val
M0136823 IHDMMIEA_00035 41787 3 Oral 0.60 protein_coding synonymous_variant LOW 828T>A Ile276Ile
M0136824 IHDMMIEA_00035 41820 3 Oral 0.60 protein_coding synonymous_variant LOW 795T>C Tyr265Tyr
M0136825 IHDMMIEA_00035 42138 3 Oral 0.60 protein_coding synonymous_variant LOW 477T>C Ser159Ser
M0136826 IHDMMIEA_00035 42243 3 Oral 0.60 protein_coding synonymous_variant LOW 372G>A Val124Val
M0136827 IHDMMIEA_00035 42321 3 Oral 0.60 protein_coding synonymous_variant LOW 294G>A Gln98Gln
M0136828 IHDMMIEA_00035 42513 3 Oral 0.60 protein_coding synonymous_variant LOW 102A>G Ala34Ala
M0136829 IHDMMIEA_00035 42647 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -33G>A None
M0136830 IHDMMIEA_00035 42779 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -165T>C None
M0136831 IHDMMIEA_00035 43413 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -799T>C None
M0136832 IHDMMIEA_00035 43435 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -821G>A None
M0136833 IHDMMIEA_00035 43451 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -837C>T None
M0136834 IHDMMIEA_00038 43739 3 Oral 0.60 protein_coding synonymous_variant LOW 174A>G Glu58Glu
M0136835 IHDMMIEA_00038 43820 3 Oral 0.60 protein_coding synonymous_variant LOW 255C>T Phe85Phe
M0136836 IHDMMIEA_00038 43874 3 Oral 0.60 protein_coding synonymous_variant LOW 309A>T Val103Val
M0136837 IHDMMIEA_00038 43895 3 Oral 0.60 protein_coding synonymous_variant LOW 330T>C Thr110Thr
M0136838 IHDMMIEA_00038 43923 3 Oral 0.60 protein_coding missense_variant MODERATE 358A>G Ile120Val
M0136839 IHDMMIEA_00038 43955 3 Oral 0.60 protein_coding synonymous_variant LOW 390C>A Gly130Gly
M0136840 IHDMMIEA_00038 44066 3 Oral 0.60 protein_coding synonymous_variant LOW 501C>T Asp167Asp
M0136841 IHDMMIEA_00038 44123 3 Oral 0.60 protein_coding synonymous_variant LOW 558C>T Ala186Ala
M0136842 IHDMMIEA_00038 44159 3 Oral 0.60 protein_coding synonymous_variant LOW 594T>C Ala198Ala
M0136843 IHDMMIEA_00038 44174 3 Oral 0.60 protein_coding synonymous_variant LOW 609A>T Gly203Gly
M0136844 IHDMMIEA_00035 44993 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2379T>C None
M0136845 IHDMMIEA_00035 45059 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2445T>C None
M0136846 IHDMMIEA_00035 45067 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2453A>G None
M0136847 IHDMMIEA_00035 45075 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2461A>C None
M0136848 IHDMMIEA_00035 45088 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2474A>G None
M0136849 IHDMMIEA_00035 45091 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2477G>A None
M0136850 IHDMMIEA_00035 45094 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2480T>A None
M0136851 IHDMMIEA_00035 45109 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2495A>G None
M0136852 IHDMMIEA_00035 45125 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2511C>T None
M0136853 IHDMMIEA_00039 45283 3 Oral 0.60 protein_coding missense_variant MODERATE 1211T>C Ile404Thr
M0136854 IHDMMIEA_00039 45297 3 Oral 0.60 protein_coding missense_variant MODERATE 1197T>G Asn399Lys
M0136855 IHDMMIEA_00039 45348 3 Oral 0.60 protein_coding synonymous_variant LOW 1146A>C Ile382Ile
M0136856 IHDMMIEA_00039 45603 3 Oral 0.60 protein_coding synonymous_variant LOW 891T>C Asn297Asn
M0136857 IHDMMIEA_00039 45636 3 Oral 0.60 protein_coding synonymous_variant LOW 858G>A Gly286Gly
M0136858 IHDMMIEA_00039 45690 3 Oral 0.60 protein_coding synonymous_variant LOW 804C>T Gly268Gly
M0136859 IHDMMIEA_00039 45714 3 Oral 0.60 protein_coding synonymous_variant LOW 780A>G Lys260Lys
M0136860 IHDMMIEA_00039 45759 3 Oral 0.60 protein_coding synonymous_variant LOW 735A>G Leu245Leu
M0136861 IHDMMIEA_00039 45765 3 Oral 0.60 protein_coding synonymous_variant LOW 729C>T Ile243Ile
M0136862 IHDMMIEA_00039 45771 3 Oral 0.60 protein_coding synonymous_variant LOW 723A>C Thr241Thr
M0136863 IHDMMIEA_00039 45801 3 Oral 0.60 protein_coding synonymous_variant LOW 693T>A Ser231Ser
M0136864 IHDMMIEA_00039 45835 3 Oral 0.60 protein_coding missense_variant MODERATE 659G>A Arg220Lys
M0136865 IHDMMIEA_00039 45846 3 Oral 0.60 protein_coding synonymous_variant LOW 648C>A Ile216Ile
M0136866 IHDMMIEA_00039 45861 3 Oral 0.60 protein_coding synonymous_variant LOW 633T>A Ala211Ala
M0136867 IHDMMIEA_00039 45941 3 Oral 0.60 protein_coding missense_variant MODERATE 553A>G Ser185Gly
M0136868 IHDMMIEA_00039 45964 3 Oral 0.60 protein_coding missense_variant MODERATE 530G>A Arg177Lys
M0136869 IHDMMIEA_00039 46032 3 Oral 0.60 protein_coding synonymous_variant LOW 462A>T Gly154Gly
M0136870 IHDMMIEA_00039 46056 3 Oral 0.60 protein_coding synonymous_variant LOW 438G>A Leu146Leu
M0136871 IHDMMIEA_00039 46092 3 Oral 0.60 protein_coding synonymous_variant LOW 402A>G Thr134Thr
M0136872 IHDMMIEA_00039 46115 3 Oral 0.60 protein_coding missense_variant MODERATE 379C>A Gln127Lys
M0136873 IHDMMIEA_00039 46143 3 Oral 0.60 protein_coding synonymous_variant LOW 351C>T Ser117Ser
M0136874 IHDMMIEA_00039 46210 3 Oral 0.60 protein_coding missense_variant MODERATE 284G>A Gly95Asp
M0136875 IHDMMIEA_00039 46264 3 Oral 0.60 protein_coding missense_variant MODERATE 230G>A Arg77Lys
M0136876 IHDMMIEA_00039 46287 3 Oral 0.60 protein_coding synonymous_variant LOW 207T>C Pro69Pro
M0136877 IHDMMIEA_00039 46407 3 Oral 0.60 protein_coding synonymous_variant LOW 87T>C Pro29Pro
M0136878 IHDMMIEA_00039 46425 3 Oral 0.60 protein_coding synonymous_variant LOW 69T>A Ala23Ala
M0136879 IHDMMIEA_00035 46541 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3927T>G None
M0136880 IHDMMIEA_00035 46542 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3928G>A None
M0136881 IHDMMIEA_00040 46641 3 Oral 0.60 protein_coding synonymous_variant LOW 30C>T Tyr10Tyr
M0136882 IHDMMIEA_00040 46667 3 Oral 0.60 protein_coding missense_variant MODERATE 56T>G Ile19Arg
M0136883 IHDMMIEA_00040 46705 3 Oral 0.60 protein_coding missense_variant MODERATE 94C>T Arg32Cys
M0136884 IHDMMIEA_00040 46801 3 Oral 0.60 protein_coding missense_variant MODERATE 190C>A Leu64Met
M0136885 IHDMMIEA_00040 46921 3 Oral 0.60 protein_coding synonymous_variant LOW 310T>C Leu104Leu
M0136886 IHDMMIEA_00040 46939 3 Oral 0.60 protein_coding missense_variant MODERATE 328G>A Asp110Asn
M0136887 IHDMMIEA_00040 46974 3 Oral 0.60 protein_coding synonymous_variant LOW 363T>A Leu121Leu
M0136888 IHDMMIEA_00040 47073 3 Oral 0.60 protein_coding synonymous_variant LOW 462T>C Thr154Thr
M0136889 IHDMMIEA_00040 47094 3 Oral 0.60 protein_coding synonymous_variant LOW 483T>C Leu161Leu
M0136890 IHDMMIEA_00040 47124 3 Oral 0.60 protein_coding synonymous_variant LOW 513T>A Ile171Ile
M0136891 IHDMMIEA_00040 47179 3 Oral 0.60 protein_coding missense_variant MODERATE 568G>A Val190Ile
M0136892 IHDMMIEA_00040 47202 3 Oral 0.60 protein_coding synonymous_variant LOW 591T>C Val197Val
M0136893 IHDMMIEA_00040 47211 3 Oral 0.60 protein_coding synonymous_variant LOW 600G>A Leu200Leu
M0136894 IHDMMIEA_00040 47268 3 Oral 0.60 protein_coding synonymous_variant LOW 657T>A Ile219Ile
M0136895 IHDMMIEA_00040 47283 3 Oral 0.60 protein_coding synonymous_variant LOW 672T>C Asp224Asp
M0136896 IHDMMIEA_00040 47316 3 Oral 0.60 protein_coding synonymous_variant LOW 705C>T Phe235Phe
M0136897 IHDMMIEA_00040 47436 3 Oral 0.60 protein_coding synonymous_variant LOW 825T>C Ala275Ala
M0136898 IHDMMIEA_00040 47520 3 Oral 0.60 protein_coding synonymous_variant LOW 909T>C Asp303Asp
M0136899 IHDMMIEA_00040 47521 3 Oral 0.60 protein_coding missense_variant MODERATE 910A>G Met304Val
M0136900 IHDMMIEA_00040 47522 3 Oral 0.60 protein_coding missense_variant MODERATE 911T>A Met304Lys
M0136901 IHDMMIEA_00040 47535 3 Oral 0.60 protein_coding synonymous_variant LOW 924A>T Leu308Leu
M0136902 IHDMMIEA_00040 47595 3 Oral 0.60 protein_coding synonymous_variant LOW 984T>C Ile328Ile
M0136903 IHDMMIEA_00040 47604 3 Oral 0.60 protein_coding synonymous_variant LOW 993T>A Val331Val
M0136904 IHDMMIEA_00040 47631 3 Oral 0.60 protein_coding synonymous_variant LOW 1020C>T Ser340Ser
M0136905 IHDMMIEA_00040 47640 3 Oral 0.60 protein_coding synonymous_variant LOW 1029A>C Thr343Thr
M0136906 IHDMMIEA_00040 47674 3 Oral 0.60 protein_coding missense_variant MODERATE 1063A>G Asn355Asp
M0136907 IHDMMIEA_00040 47675 3 Oral 0.60 protein_coding missense_variant MODERATE 1064A>G Asn355Ser
M0136908 IHDMMIEA_00040 47707 3 Oral 0.60 protein_coding missense_variant MODERATE 1096A>G Thr366Ala
M0136909 IHDMMIEA_00040 47715 3 Oral 0.60 protein_coding synonymous_variant LOW 1104C>A Ile368Ile
M0136910 IHDMMIEA_00040 47787 3 Oral 0.60 protein_coding synonymous_variant LOW 1176G>A Ala392Ala
M0136911 IHDMMIEA_00039 48362 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -1869C>T None
M0136912 IHDMMIEA_00041 48380 3 Oral 0.60 protein_coding splice_region_variant&stop_retained_variant LOW 549A>G Ter183Ter
M0136913 IHDMMIEA_00041 48575 3 Oral 0.60 protein_coding synonymous_variant LOW 354C>T Gly118Gly
M0136914 IHDMMIEA_00039 50129 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3636A>C None
M0136915 IHDMMIEA_00039 50134 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3641A>G None
M0136916 IHDMMIEA_00039 50145 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3652G>C None
M0136917 IHDMMIEA_00039 50940 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -4447C>T None
M0136918 IHDMMIEA_00043 51001 3 Oral 0.60 protein_coding synonymous_variant LOW 39A>G Leu13Leu
M0136919 IHDMMIEA_00043 51065 3 Oral 0.60 protein_coding missense_variant MODERATE 103A>G Ser35Gly
M0136920 IHDMMIEA_00043 51352 3 Oral 0.60 protein_coding synonymous_variant LOW 390T>C Asn130Asn
M0136921 IHDMMIEA_00044 51956 3 Oral 0.60 protein_coding missense_variant MODERATE 17G>A Cys6Tyr
M0136922 IHDMMIEA_00044 52136 3 Oral 0.60 protein_coding missense_variant MODERATE 197T>C Leu66Pro
M0136923 IHDMMIEA_00044 52353 3 Oral 0.60 protein_coding synonymous_variant LOW 414G>T Thr138Thr
M0136924 IHDMMIEA_00044 52485 3 Oral 0.60 protein_coding missense_variant MODERATE 546T>G Asn182Lys
M0136925 IHDMMIEA_00041 52849 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3921C>A None
M0136926 IHDMMIEA_00041 52857 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3929C>G None
M0136927 IHDMMIEA_00045 54027 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -10G>C None
M0136928 IHDMMIEA_00045 54079 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -62T>G None
M0136929 IHDMMIEA_00045 54084 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -67T>G None
M0136930 IHDMMIEA_00047 56734 3 Oral 0.60 protein_coding synonymous_variant LOW 1626A>G Lys542Lys
M0136931 IHDMMIEA_00047 56737 3 Oral 0.60 protein_coding synonymous_variant LOW 1629A>G Glu543Glu
M0136932 IHDMMIEA_00047 56758 3 Oral 0.60 protein_coding synonymous_variant LOW 1650T>A Thr550Thr
M0136933 IHDMMIEA_00047 56761 3 Oral 0.60 protein_coding synonymous_variant LOW 1653T>C Ala551Ala
M0136934 IHDMMIEA_00047 56779 3 Oral 0.60 protein_coding synonymous_variant LOW 1671A>G Pro557Pro
M0136935 IHDMMIEA_00047 56785 3 Oral 0.60 protein_coding synonymous_variant LOW 1677G>T Leu559Leu
M0136936 IHDMMIEA_00047 56830 3 Oral 0.60 protein_coding synonymous_variant LOW 1722G>A Thr574Thr
M0136937 IHDMMIEA_00047 56842 3 Oral 0.60 protein_coding synonymous_variant LOW 1734T>A Gly578Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
IHDMMIEA_00033 QUB59439.1|GH13_38 97.2 0 1 564 1 1
IHDMMIEA_00056 QKH87693.1|GT5 100 1.36e-200 1 269 1 1
IHDMMIEA_00070 QUB60137.1|GH25 98.6 4.29e-220 1 292 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term