Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3364
  Reference Plasmid   MGYG000298898__MGYG000298898_28
  Reference Plasmid Size   14642
  Reference Plasmid GC Content   0.47
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0137086 GKGFBLNH_00003 2854 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -376G>T None
M0137087 GKGFBLNH_00003 2893 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -337G>T None
M0137088 GKGFBLNH_00003 2900 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -330G>A None
M0137089 GKGFBLNH_00003 2925 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -305G>A None
M0137090 GKGFBLNH_00003 2951 3 Oral 0.14 protein_coding upstream_gene_variant MODIFIER -279C>T None
M0137091 GKGFBLNH_00003 2952 4 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -278C>G None
M0137092 GKGFBLNH_00003 2964 5 Oral 0.24 protein_coding upstream_gene_variant MODIFIER -266A>G None
M0137093 GKGFBLNH_00003 2997 5 Oral 0.24 protein_coding upstream_gene_variant MODIFIER -233G>C None
M0137094 GKGFBLNH_00003 3020 8 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -210C>T None
M0137095 GKGFBLNH_00003 3140 4 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -90T>C None
M0137096 GKGFBLNH_00003 3310 6 Oral 0.29 protein_coding synonymous_variant LOW 81C>T Pro27Pro
M0137097 GKGFBLNH_00003 3475 8 Oral 0.38 protein_coding synonymous_variant LOW 246T>C Gly82Gly
M0137098 GKGFBLNH_00003 3517 6 Oral 0.29 protein_coding synonymous_variant LOW 288G>C Thr96Thr
M0137099 GKGFBLNH_00003 3559 3 Oral 0.14 protein_coding synonymous_variant LOW 330A>G Val110Val
M0137100 GKGFBLNH_00003 3670 10 Oral 0.48 protein_coding synonymous_variant LOW 441A>G Lys147Lys
M0137101 GKGFBLNH_00003 3859 6 Oral 0.29 protein_coding synonymous_variant LOW 630A>T Pro210Pro
M0137102 GKGFBLNH_00003 3907 10 Oral 0.48 protein_coding synonymous_variant LOW 678A>G Lys226Lys
M0137103 GKGFBLNH_00003 3919 7 Oral 0.33 protein_coding synonymous_variant LOW 690T>C Asp230Asp
M0137104 GKGFBLNH_00003 4153 10 Oral 0.48 protein_coding synonymous_variant LOW 924T>C Asp308Asp
M0137105 GKGFBLNH_00003 4174 7 Oral 0.33 protein_coding synonymous_variant LOW 945G>A Lys315Lys
M0137106 GKGFBLNH_00003 4222 9 Oral 0.43 protein_coding synonymous_variant LOW 993G>T Gly331Gly
M0137107 GKGFBLNH_00003 4399 8 Oral 0.38 protein_coding synonymous_variant LOW 1170A>G Thr390Thr
M0137108 GKGFBLNH_00003 4471 10 Oral 0.48 protein_coding synonymous_variant LOW 1242T>C Thr414Thr
M0137109 GKGFBLNH_00003 4628 7 Oral 0.33 protein_coding synonymous_variant LOW 1399T>C Leu467Leu
M0137110 GKGFBLNH_00003 4673 8 Oral 0.38 protein_coding synonymous_variant LOW 1444C>T Leu482Leu
M0137111 GKGFBLNH_00003 4687 6 Oral 0.29 protein_coding synonymous_variant LOW 1458A>T Pro486Pro
M0137112 GKGFBLNH_00003 4873 5 Oral 0.24 protein_coding synonymous_variant LOW 1644C>T Gly548Gly
M0137113 GKGFBLNH_00003 4924 7 Oral 0.33 protein_coding synonymous_variant LOW 1695A>T Thr565Thr
M0137114 GKGFBLNH_00003 5194 8 Oral 0.38 protein_coding synonymous_variant LOW 1965A>T Ala655Ala
M0137115 GKGFBLNH_00003 5200 8 Oral 0.38 protein_coding synonymous_variant LOW 1971A>G Val657Val
M0137116 GKGFBLNH_00003 5242 7 Oral 0.33 protein_coding synonymous_variant LOW 2013G>C Ala671Ala
M0137117 GKGFBLNH_00003 5260 9 Oral 0.43 protein_coding synonymous_variant LOW 2031G>A Ser677Ser
M0137118 GKGFBLNH_00003 5377 5 Oral 0.24 protein_coding synonymous_variant LOW 2148A>T Ala716Ala
M0137119 GKGFBLNH_00003 5497 3 Oral 0.14 protein_coding synonymous_variant LOW 2268T>C Gly756Gly
M0137120 GKGFBLNH_00003 5563 8 Oral 0.38 protein_coding synonymous_variant LOW 2334T>C Asn778Asn
M0137121 GKGFBLNH_00003 5782 6 Oral 0.29 protein_coding synonymous_variant LOW 2553T>A Ile851Ile
M0137122 GKGFBLNH_00003 5842 4 Oral 0.19 protein_coding synonymous_variant LOW 2613T>A Ala871Ala
M0137123 GKGFBLNH_00003 5863 6 Oral 0.29 protein_coding synonymous_variant LOW 2634A>G Pro878Pro
M0137124 GKGFBLNH_00003 6055 4 Oral 0.19 protein_coding synonymous_variant LOW 2826T>C Asp942Asp
M0137125 GKGFBLNH_00003 6067 4 Oral 0.19 protein_coding synonymous_variant LOW 2838T>C Ser946Ser
M0137126 GKGFBLNH_00003 6143 7 Oral 0.33 protein_coding synonymous_variant LOW 2914T>C Leu972Leu
M0137127 GKGFBLNH_00003 6145 7 Oral 0.33 protein_coding synonymous_variant LOW 2916A>G Leu972Leu
M0137128 GKGFBLNH_00003 6148 7 Oral 0.33 protein_coding synonymous_variant LOW 2919G>T Ala973Ala
M0137129 GKGFBLNH_00004 6633 6 Oral 0.29 protein_coding synonymous_variant LOW 117T>G Pro39Pro
M0137130 GKGFBLNH_00004 6798 10 Oral 0.48 protein_coding synonymous_variant LOW 282A>G Ser94Ser
M0137131 GKGFBLNH_00004 7038 4 Oral 0.19 protein_coding synonymous_variant LOW 522G>A Leu174Leu
M0137132 GKGFBLNH_00004 7072 6 Oral 0.29 protein_coding synonymous_variant LOW 556C>T Leu186Leu
M0137133 GKGFBLNH_00004 7143 6 Oral 0.29 protein_coding synonymous_variant LOW 627C>G Leu209Leu
M0137134 GKGFBLNH_00004 7503 9 Oral 0.43 protein_coding synonymous_variant LOW 987T>C Thr329Thr
M0137135 GKGFBLNH_00004 7542 6 Oral 0.29 protein_coding synonymous_variant LOW 1026C>T Pro342Pro
M0137136 GKGFBLNH_00004 7701 12 Oral 0.57 protein_coding synonymous_variant LOW 1185T>C Ile395Ile
M0137137 GKGFBLNH_00004 7767 13 Oral 0.62 protein_coding missense_variant MODERATE 1251T>A His417Gln
M0137138 GKGFBLNH_00004 7797 6 Oral 0.29 protein_coding synonymous_variant LOW 1281T>C Ala427Ala
M0137139 GKGFBLNH_00004 8029 6 Oral 0.29 protein_coding synonymous_variant LOW 1513T>C Leu505Leu
M0137140 GKGFBLNH_00005 8129 11 Oral 0.52 protein_coding missense_variant MODERATE 17G>C Gly6Ala
M0137141 GKGFBLNH_00005 8152 3 Oral 0.14 protein_coding missense_variant MODERATE 40A>T Ile14Leu
M0137142 GKGFBLNH_00005 8364 3 Oral 0.14 protein_coding synonymous_variant LOW 252G>A Thr84Thr
M0137143 GKGFBLNH_00005 8538 5 Oral 0.24 protein_coding synonymous_variant LOW 426C>T Ala142Ala
M0137144 GKGFBLNH_00005 8545 3 Oral 0.14 protein_coding missense_variant MODERATE 433G>A Ala145Thr
M0137145 GKGFBLNH_00005 8583 4 Oral 0.19 protein_coding synonymous_variant LOW 471T>C Val157Val
M0137146 GKGFBLNH_00005 8599 9 Oral 0.43 protein_coding synonymous_variant LOW 487C>T Leu163Leu
M0137147 GKGFBLNH_00005 8613 7 Oral 0.33 protein_coding synonymous_variant LOW 501T>C Tyr167Tyr
M0137148 GKGFBLNH_00005 8632 4 Oral 0.19 protein_coding missense_variant MODERATE 520C>G Pro174Ala
M0137149 GKGFBLNH_00005 8766 5 Oral 0.24 protein_coding synonymous_variant LOW 654T>C Asn218Asn
M0137150 GKGFBLNH_00005 8871 9 Oral 0.43 protein_coding synonymous_variant LOW 759C>T Asn253Asn
M0137151 GKGFBLNH_00005 8899 10 Oral 0.48 protein_coding missense_variant MODERATE 787T>G Ser263Ala
M0137152 GKGFBLNH_00005 8904 8 Oral 0.38 protein_coding synonymous_variant LOW 792T>A Ser264Ser
M0137153 GKGFBLNH_00005 8925 10 Oral 0.48 protein_coding synonymous_variant LOW 813G>A Pro271Pro
M0137154 GKGFBLNH_00005 8943 7 Oral 0.33 protein_coding synonymous_variant LOW 831T>C His277His
M0137155 GKGFBLNH_00005 8955 3 Oral 0.14 protein_coding synonymous_variant LOW 843C>T Ala281Ala
M0137156 GKGFBLNH_00005 8958 4 Oral 0.19 protein_coding synonymous_variant LOW 846C>T Phe282Phe
M0137157 GKGFBLNH_00005 8967 5 Oral 0.24 protein_coding synonymous_variant LOW 855T>C Asp285Asp
M0137158 GKGFBLNH_00005 9060 8 Oral 0.38 protein_coding synonymous_variant LOW 948G>T Ala316Ala
M0137159 GKGFBLNH_00005 9063 8 Oral 0.38 protein_coding synonymous_variant LOW 951T>C Arg317Arg
M0137160 GKGFBLNH_00005 9387 10 Oral 0.48 protein_coding synonymous_variant LOW 1275C>T Asp425Asp
M0137161 GKGFBLNH_00005 9450 9 Oral 0.43 protein_coding synonymous_variant LOW 1338G>T Ala446Ala
M0137162 GKGFBLNH_00005 9522 12 Oral 0.57 protein_coding synonymous_variant LOW 1410T>C Ala470Ala
M0137163 GKGFBLNH_00005 9594 4 Oral 0.19 protein_coding synonymous_variant LOW 1482T>C Thr494Thr
M0137164 GKGFBLNH_00005 9657 12 Oral 0.57 protein_coding synonymous_variant LOW 1545A>G Gln515Gln
M0137165 GKGFBLNH_00006 9773 10 Oral 0.48 protein_coding synonymous_variant LOW 111A>G Ala37Ala
M0137166 GKGFBLNH_00006 9833 12 Oral 0.57 protein_coding synonymous_variant LOW 171A>G Leu57Leu
M0137167 GKGFBLNH_00006 9878 5 Oral 0.24 protein_coding synonymous_variant LOW 216G>C Pro72Pro
M0137168 GKGFBLNH_00006 9879 5 Oral 0.24 protein_coding synonymous_variant LOW 217C>T Leu73Leu
M0137169 GKGFBLNH_00006 9881 5 Oral 0.24 protein_coding synonymous_variant LOW 219A>G Leu73Leu
M0137170 GKGFBLNH_00006 9968 10 Oral 0.48 protein_coding synonymous_variant LOW 306T>C Arg102Arg
M0137171 GKGFBLNH_00006 10016 8 Oral 0.38 protein_coding synonymous_variant LOW 354G>A Gln118Gln
M0137172 GKGFBLNH_00006 10133 11 Oral 0.52 protein_coding synonymous_variant LOW 471A>G Thr157Thr
M0137173 GKGFBLNH_00006 10253 12 Oral 0.57 protein_coding synonymous_variant LOW 591C>G Gly197Gly
M0137174 GKGFBLNH_00006 10493 3 Oral 0.14 protein_coding synonymous_variant LOW 831C>T His277His
M0137175 GKGFBLNH_00006 10571 11 Oral 0.52 protein_coding synonymous_variant LOW 909T>C Asp303Asp
M0137176 GKGFBLNH_00006 10577 3 Oral 0.14 protein_coding synonymous_variant LOW 915A>G Lys305Lys
M0137177 GKGFBLNH_00006 10626 8 Oral 0.38 protein_coding synonymous_variant LOW 964T>C Leu322Leu
M0137178 GKGFBLNH_00006 10628 10 Oral 0.48 protein_coding synonymous_variant LOW 966A>G Leu322Leu
M0137179 GKGFBLNH_00006 10630 10 Oral 0.48 protein_coding missense_variant MODERATE 968T>C Val323Ala
M0137180 GKGFBLNH_00006 10728 11 Oral 0.52 protein_coding synonymous_variant LOW 1066T>C Leu356Leu
M0137181 GKGFBLNH_00006 10763 11 Oral 0.52 protein_coding synonymous_variant LOW 1101A>T Ile367Ile
M0137182 GKGFBLNH_00004 7638 3 Oral 0.14 protein_coding synonymous_variant LOW 1122C>T Gly374Gly
M0137183 GKGFBLNH_00005 8280 9 Oral 0.43 protein_coding synonymous_variant LOW 168T>C Ala56Ala
M0137184 GKGFBLNH_00005 8307 7 Oral 0.33 protein_coding synonymous_variant LOW 195G>T Pro65Pro
M0137185 GKGFBLNH_00005 8422 5 Oral 0.24 protein_coding missense_variant MODERATE 310G>A Asp104Asn
M0137186 GKGFBLNH_00005 8640 8 Oral 0.38 protein_coding synonymous_variant LOW 528G>A Ala176Ala
M0137187 GKGFBLNH_00007 11108 11 Oral 0.52 protein_coding synonymous_variant LOW 291T>C Asp97Asp
M0137188 GKGFBLNH_00007 11360 7 Oral 0.33 protein_coding synonymous_variant LOW 543G>A Thr181Thr
M0137189 GKGFBLNH_00007 11369 8 Oral 0.38 protein_coding synonymous_variant LOW 552A>G Lys184Lys
M0137190 GKGFBLNH_00007 11415 6 Oral 0.29 protein_coding missense_variant MODERATE 598A>G Thr200Ala
M0137191 GKGFBLNH_00007 11537 7 Oral 0.33 protein_coding synonymous_variant LOW 720T>C Asp240Asp
M0137192 GKGFBLNH_00007 11558 8 Oral 0.38 protein_coding synonymous_variant LOW 741T>C Thr247Thr
M0137193 GKGFBLNH_00007 11768 9 Oral 0.43 protein_coding synonymous_variant LOW 951A>G Lys317Lys
M0137194 GKGFBLNH_00007 11828 10 Oral 0.48 protein_coding synonymous_variant LOW 1011A>G Ala337Ala
M0137195 GKGFBLNH_00007 11949 4 Oral 0.19 protein_coding missense_variant MODERATE 1132T>G Ser378Ala
M0137196 GKGFBLNH_00007 12005 6 Oral 0.29 protein_coding synonymous_variant LOW 1188C>T Tyr396Tyr
M0137197 GKGFBLNH_00007 12105 7 Oral 0.33 protein_coding missense_variant MODERATE 1288T>G Ser430Ala
M0137198 GKGFBLNH_00007 12365 10 Oral 0.48 protein_coding synonymous_variant LOW 1548C>G Val516Val
M0137199 GKGFBLNH_00007 12368 10 Oral 0.48 protein_coding synonymous_variant LOW 1551C>T His517His
M0137200 GKGFBLNH_00007 12422 10 Oral 0.48 protein_coding synonymous_variant LOW 1605C>A Val535Val
M0137201 GKGFBLNH_00007 12431 11 Oral 0.52 protein_coding synonymous_variant LOW 1614T>C Gly538Gly
M0137202 GKGFBLNH_00007 12456 5 Oral 0.24 protein_coding missense_variant MODERATE 1639G>T Ala547Ser
M0137203 GKGFBLNH_00005 9291 6 Oral 0.29 protein_coding synonymous_variant LOW 1179G>A Ser393Ser
M0137204 GKGFBLNH_00005 9294 6 Oral 0.29 protein_coding synonymous_variant LOW 1182T>C Ile394Ile
M0137205 GKGFBLNH_00005 9312 3 Oral 0.14 protein_coding synonymous_variant LOW 1200A>T Ala400Ala
M0137206 GKGFBLNH_00005 9456 5 Oral 0.24 protein_coding synonymous_variant LOW 1344C>T Ile448Ile
M0137207 GKGFBLNH_00006 9776 8 Oral 0.38 protein_coding synonymous_variant LOW 114C>T Leu38Leu
M0137208 GKGFBLNH_00006 10226 4 Oral 0.19 protein_coding synonymous_variant LOW 564C>T Cys188Cys
M0137209 GKGFBLNH_00006 10737 5 Oral 0.24 protein_coding missense_variant MODERATE 1075C>G Leu359Val
M0137210 GKGFBLNH_00006 10745 5 Oral 0.24 protein_coding synonymous_variant LOW 1083G>C Gly361Gly
M0137211 GKGFBLNH_00007 10886 5 Oral 0.24 protein_coding synonymous_variant LOW 69T>C Asn23Asn
M0137212 GKGFBLNH_00007 10892 6 Oral 0.29 protein_coding synonymous_variant LOW 75T>C Asp25Asp
M0137213 GKGFBLNH_00007 11031 4 Oral 0.19 protein_coding synonymous_variant LOW 214T>C Leu72Leu
M0137214 GKGFBLNH_00007 11309 10 Oral 0.48 protein_coding synonymous_variant LOW 492A>G Thr164Thr
M0137215 GKGFBLNH_00007 11330 5 Oral 0.24 protein_coding synonymous_variant LOW 513A>T Pro171Pro
M0137216 GKGFBLNH_00007 11345 4 Oral 0.19 protein_coding synonymous_variant LOW 528C>T Gly176Gly
M0137217 GKGFBLNH_00007 11579 3 Oral 0.14 protein_coding synonymous_variant LOW 762T>C Asp254Asp
M0137218 GKGFBLNH_00007 11663 3 Oral 0.14 protein_coding synonymous_variant LOW 846T>A Pro282Pro
M0137219 GKGFBLNH_00007 11975 3 Oral 0.14 protein_coding synonymous_variant LOW 1158G>A Leu386Leu
M0137220 GKGFBLNH_00007 12011 5 Oral 0.24 protein_coding synonymous_variant LOW 1194T>C Gly398Gly
M0137221 GKGFBLNH_00007 12080 5 Oral 0.24 protein_coding synonymous_variant LOW 1263T>C Pro421Pro
M0137222 GKGFBLNH_00007 12134 8 Oral 0.38 protein_coding synonymous_variant LOW 1317T>C Gly439Gly
M0137223 GKGFBLNH_00007 12136 10 Oral 0.48 protein_coding missense_variant MODERATE 1319T>C Val440Ala
M0137224 GKGFBLNH_00007 12311 3 Oral 0.14 protein_coding synonymous_variant LOW 1494T>C Tyr498Tyr
M0137225 GKGFBLNH_00008 12604 4 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -9T>C None
M0137226 GKGFBLNH_00008 12616 3 Oral 0.14 protein_coding missense_variant MODERATE 4A>G Ile2Val
M0137227 GKGFBLNH_00008 12692 4 Oral 0.19 protein_coding missense_variant MODERATE 80A>T Glu27Val
M0137228 GKGFBLNH_00008 13004 3 Oral 0.14 protein_coding missense_variant MODERATE 392G>A Ser131Asn
M0137229 GKGFBLNH_00008 13014 4 Oral 0.19 protein_coding synonymous_variant LOW 402T>C Leu134Leu
M0137230 GKGFBLNH_00008 13077 9 Oral 0.43 protein_coding synonymous_variant LOW 465C>T Leu155Leu
M0137231 GKGFBLNH_00008 13078 9 Oral 0.43 protein_coding missense_variant MODERATE 466A>G Ser156Gly
M0137232 GKGFBLNH_00008 13090 4 Oral 0.19 protein_coding missense_variant MODERATE 478C>A Gln160Lys
M0137233 GKGFBLNH_00008 13107 7 Oral 0.33 protein_coding synonymous_variant LOW 495C>T Asn165Asn
M0137234 GKGFBLNH_00008 13108 8 Oral 0.38 protein_coding missense_variant MODERATE 496G>A Asp166Asn
M0137235 GKGFBLNH_00008 13206 5 Oral 0.24 protein_coding synonymous_variant LOW 594T>C Ala198Ala
M0137236 GKGFBLNH_00008 13506 4 Oral 0.19 protein_coding synonymous_variant LOW 894C>G Pro298Pro
M0137237 GKGFBLNH_00008 13507 4 Oral 0.19 protein_coding missense_variant MODERATE 895A>G Thr299Ala
M0137238 GKGFBLNH_00008 13575 4 Oral 0.19 protein_coding synonymous_variant LOW 963A>G Lys321Lys
M0137239 GKGFBLNH_00008 13615 4 Oral 0.19 protein_coding synonymous_variant LOW 1003C>T Leu335Leu
M0137240 GKGFBLNH_00008 13620 8 Oral 0.38 protein_coding synonymous_variant LOW 1008C>T Arg336Arg
M0137241 GKGFBLNH_00008 13626 8 Oral 0.38 protein_coding synonymous_variant LOW 1014C>T Phe338Phe
M0137242 GKGFBLNH_00008 13674 8 Oral 0.38 protein_coding synonymous_variant LOW 1062G>A Leu354Leu
M0137243 GKGFBLNH_00008 13687 8 Oral 0.38 protein_coding missense_variant MODERATE 1075A>G Asn359Asp
M0137244 GKGFBLNH_00008 13727 8 Oral 0.38 protein_coding missense_variant MODERATE 1115A>G Gln372Arg
M0137245 GKGFBLNH_00008 13728 8 Oral 0.38 protein_coding missense_variant MODERATE 1116A>C Gln372His
M0137246 GKGFBLNH_00008 13734 7 Oral 0.33 protein_coding synonymous_variant LOW 1122T>C Leu374Leu
M0137247 GKGFBLNH_00008 13830 5 Oral 0.24 protein_coding synonymous_variant LOW 1218A>G Ala406Ala
M0137248 GKGFBLNH_00008 13878 5 Oral 0.24 protein_coding synonymous_variant LOW 1266T>C Ile422Ile
M0137249 GKGFBLNH_00008 13923 6 Oral 0.29 protein_coding synonymous_variant LOW 1311A>G Gln437Gln
M0137250 GKGFBLNH_00008 13962 3 Oral 0.14 protein_coding synonymous_variant LOW 1350T>C Ala450Ala
M0137251 GKGFBLNH_00008 14034 4 Oral 0.19 protein_coding synonymous_variant LOW 1422G>T Ser474Ser
M0137252 GKGFBLNH_00008 14082 5 Oral 0.24 protein_coding synonymous_variant LOW 1470G>A Pro490Pro
M0137253 GKGFBLNH_00008 14088 9 Oral 0.43 protein_coding synonymous_variant LOW 1476A>G Val492Val
M0137254 GKGFBLNH_00003 3117 7 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -113A>T None
M0137255 GKGFBLNH_00003 4022 4 Oral 0.19 protein_coding missense_variant MODERATE 793G>T Ala265Ser
M0137256 GKGFBLNH_00003 4116 5 Oral 0.24 protein_coding missense_variant MODERATE 887A>G His296Arg
M0137257 GKGFBLNH_00003 4145 5 Oral 0.24 protein_coding synonymous_variant LOW 916T>C Leu306Leu
M0137258 GKGFBLNH_00003 4243 6 Oral 0.29 protein_coding synonymous_variant LOW 1014A>G Ala338Ala
M0137259 GKGFBLNH_00003 4348 4 Oral 0.19 protein_coding synonymous_variant LOW 1119C>T Asn373Asn
M0137260 GKGFBLNH_00003 4933 7 Oral 0.33 protein_coding synonymous_variant LOW 1704C>T Tyr568Tyr
M0137261 GKGFBLNH_00003 5011 6 Oral 0.29 protein_coding synonymous_variant LOW 1782A>G Ser594Ser
M0137262 GKGFBLNH_00003 5161 4 Oral 0.19 protein_coding synonymous_variant LOW 1932T>C Tyr644Tyr
M0137263 GKGFBLNH_00003 5185 5 Oral 0.24 protein_coding synonymous_variant LOW 1956C>T Ala652Ala
M0137264 GKGFBLNH_00003 5233 4 Oral 0.19 protein_coding synonymous_variant LOW 2004C>T Pro668Pro
M0137265 GKGFBLNH_00003 5435 5 Oral 0.24 protein_coding missense_variant MODERATE 2206C>T Leu736Phe
M0137266 GKGFBLNH_00003 5437 5 Oral 0.24 protein_coding synonymous_variant LOW 2208T>G Leu736Leu
M0137267 GKGFBLNH_00003 5812 3 Oral 0.14 protein_coding synonymous_variant LOW 2583C>T His861His
M0137268 GKGFBLNH_00003 6475 7 Oral 0.33 protein_coding synonymous_variant LOW 3246T>A Ile1082Ile
M0137269 GKGFBLNH_00004 7338 4 Oral 0.19 protein_coding synonymous_variant LOW 822A>G Gln274Gln
M0137270 GKGFBLNH_00004 7461 4 Oral 0.19 protein_coding synonymous_variant LOW 945T>C Pro315Pro
M0137271 GKGFBLNH_00004 7683 3 Oral 0.14 protein_coding synonymous_variant LOW 1167G>T Ser389Ser
M0137272 GKGFBLNH_00005 8940 6 Oral 0.29 protein_coding synonymous_variant LOW 828G>C Ala276Ala
M0137273 GKGFBLNH_00005 9428 4 Oral 0.19 protein_coding missense_variant MODERATE 1316C>T Thr439Met
M0137274 GKGFBLNH_00005 9432 6 Oral 0.29 protein_coding synonymous_variant LOW 1320T>C Ala440Ala
M0137275 GKGFBLNH_00005 9585 3 Oral 0.14 protein_coding synonymous_variant LOW 1473T>G Leu491Leu
M0137276 GKGFBLNH_00006 10145 4 Oral 0.19 protein_coding synonymous_variant LOW 483A>G Ala161Ala
M0137277 GKGFBLNH_00006 10412 6 Oral 0.29 protein_coding synonymous_variant LOW 750A>G Lys250Lys
M0137278 GKGFBLNH_00007 11315 3 Oral 0.14 protein_coding synonymous_variant LOW 498C>T Asn166Asn
M0137279 GKGFBLNH_00003 4141 3 Oral 0.14 protein_coding synonymous_variant LOW 912A>G Leu304Leu
M0137280 GKGFBLNH_00003 4849 3 Oral 0.14 protein_coding synonymous_variant LOW 1620T>C Thr540Thr
M0137281 GKGFBLNH_00003 5099 4 Oral 0.19 protein_coding missense_variant MODERATE 1870A>T Ser624Cys
M0137282 GKGFBLNH_00004 7017 3 Oral 0.14 protein_coding synonymous_variant LOW 501T>C Gly167Gly
M0137283 GKGFBLNH_00004 7071 4 Oral 0.19 protein_coding synonymous_variant LOW 555G>A Pro185Pro
M0137284 GKGFBLNH_00004 7186 4 Oral 0.19 protein_coding synonymous_variant LOW 670T>C Leu224Leu
M0137285 GKGFBLNH_00004 7216 4 Oral 0.19 protein_coding synonymous_variant LOW 700C>T Leu234Leu
M0137286 GKGFBLNH_00004 7227 4 Oral 0.19 protein_coding synonymous_variant LOW 711G>A Thr237Thr
M0137287 GKGFBLNH_00004 7245 3 Oral 0.14 protein_coding synonymous_variant LOW 729T>G Pro243Pro
M0137288 GKGFBLNH_00005 8652 5 Oral 0.24 protein_coding synonymous_variant LOW 540A>T Thr180Thr
M0137289 GKGFBLNH_00005 9036 4 Oral 0.19 protein_coding synonymous_variant LOW 924T>C Tyr308Tyr
M0137290 GKGFBLNH_00005 9498 4 Oral 0.19 protein_coding synonymous_variant LOW 1386C>A Ala462Ala
M0137291 GKGFBLNH_00006 10502 4 Oral 0.19 protein_coding synonymous_variant LOW 840A>G Ser280Ser
M0137292 GKGFBLNH_00007 11354 5 Oral 0.24 protein_coding synonymous_variant LOW 537G>T Ser179Ser
M0137293 GKGFBLNH_00007 11935 4 Oral 0.19 protein_coding missense_variant MODERATE 1118T>C Met373Thr
M0137294 GKGFBLNH_00004 6854 3 Oral 0.14 protein_coding missense_variant MODERATE 338G>A Ser113Asn
M0137295 GKGFBLNH_00005 9378 3 Oral 0.14 protein_coding synonymous_variant LOW 1266C>A Thr422Thr
M0137296 GKGFBLNH_00006 9812 3 Oral 0.14 protein_coding synonymous_variant LOW 150C>T His50His
M0137297 GKGFBLNH_00007 11420 4 Oral 0.19 protein_coding synonymous_variant LOW 603T>C Asn201Asn
M0137298 GKGFBLNH_00007 11564 4 Oral 0.19 protein_coding synonymous_variant LOW 747T>A Ser249Ser
M0137299 GKGFBLNH_00008 14184 4 Oral 0.19 protein_coding synonymous_variant LOW 1572G>A Thr524Thr
M0137300 GKGFBLNH_00008 14262 4 Oral 0.19 protein_coding synonymous_variant LOW 1650T>C Arg550Arg
M0137301 GKGFBLNH_00008 14289 3 Oral 0.14 protein_coding synonymous_variant LOW 1677C>T Ser559Ser
M0137302 GKGFBLNH_00008 14329 3 Oral 0.14 protein_coding missense_variant MODERATE 1717C>A Gln573Lys
M0137303 GKGFBLNH_00008 14338 3 Oral 0.14 protein_coding missense_variant MODERATE 1726C>T His576Tyr
M0137304 GKGFBLNH_00004 7902 4 Oral 0.19 protein_coding synonymous_variant LOW 1386T>C Arg462Arg
M0137305 GKGFBLNH_00004 6861 3 Oral 0.14 protein_coding synonymous_variant LOW 345A>G Gln115Gln
M0137306 GKGFBLNH_00004 7947 5 Oral 0.24 protein_coding synonymous_variant LOW 1431A>G Leu477Leu
M0137307 GKGFBLNH_00003 3376 3 Oral 0.14 protein_coding synonymous_variant LOW 147A>G Ala49Ala
M0137308 GKGFBLNH_00005 8689 3 Oral 0.14 protein_coding missense_variant MODERATE 577A>G Thr193Ala
M0137309 GKGFBLNH_00005 8879 3 Oral 0.14 protein_coding missense_variant MODERATE 767G>C Gly256Ala
M0137310 GKGFBLNH_00006 9771 3 Oral 0.14 protein_coding missense_variant MODERATE 109G>A Ala37Thr
M0137311 GKGFBLNH_00008 13105 6 Oral 0.29 protein_coding missense_variant MODERATE 493A>G Asn165Asp
M0137312 GKGFBLNH_00008 13704 6 Oral 0.29 protein_coding synonymous_variant LOW 1092T>C Arg364Arg
M0137313 GKGFBLNH_00008 13887 3 Oral 0.14 protein_coding synonymous_variant LOW 1275T>C Asp425Asp
M0137314 GKGFBLNH_00004 7995 3 Oral 0.14 protein_coding synonymous_variant LOW 1479G>A Ser493Ser
M0137315 GKGFBLNH_00008 13941 3 Oral 0.14 protein_coding synonymous_variant LOW 1329C>G Pro443Pro
M0137316 GKGFBLNH_00008 14235 4 Oral 0.19 protein_coding synonymous_variant LOW 1623T>C Asp541Asp
M0137317 GKGFBLNH_00003 4987 3 Oral 0.14 protein_coding synonymous_variant LOW 1758T>C Phe586Phe
M0137318 GKGFBLNH_00003 5527 3 Oral 0.14 protein_coding synonymous_variant LOW 2298A>T Val766Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term