Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3366
  Reference Plasmid   MGYG000298935__MGYG000298935_7
  Reference Plasmid Size   389195
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0137335 MEHOPDBF_00225 228837 3 Oral 0.25 protein_coding synonymous_variant LOW 915G>A Thr305Thr
M0137336 MEHOPDBF_00226 228870 3 Oral 0.25 protein_coding missense_variant MODERATE 10G>T Val4Phe
M0137337 MEHOPDBF_00226 228989 3 Oral 0.25 protein_coding synonymous_variant LOW 129G>A Glu43Glu
M0137338 MEHOPDBF_00226 229005 3 Oral 0.25 protein_coding missense_variant MODERATE 145A>G Met49Val
M0137339 MEHOPDBF_00226 229007 3 Oral 0.25 protein_coding missense_variant MODERATE 147G>A Met49Ile
M0137340 MEHOPDBF_00226 229010 3 Oral 0.25 protein_coding synonymous_variant LOW 150A>G Pro50Pro
M0137341 MEHOPDBF_00226 229014 3 Oral 0.25 protein_coding missense_variant MODERATE 154A>G Ile52Val
M0137342 MEHOPDBF_00226 229017 3 Oral 0.25 protein_coding missense_variant MODERATE 157C>G Leu53Val
M0137343 MEHOPDBF_00226 229032 3 Oral 0.25 protein_coding missense_variant MODERATE 172A>G Ile58Val
M0137344 MEHOPDBF_00226 229041 3 Oral 0.25 protein_coding missense_variant MODERATE 181A>G Ser61Gly
M0137345 MEHOPDBF_00227 229155 3 Oral 0.25 protein_coding synonymous_variant LOW 60A>G Pro20Pro
M0137346 MEHOPDBF_00227 229188 3 Oral 0.25 protein_coding synonymous_variant LOW 93T>C Phe31Phe
M0137347 MEHOPDBF_00227 229269 3 Oral 0.25 protein_coding synonymous_variant LOW 174C>T Asp58Asp
M0137348 MEHOPDBF_00227 229275 3 Oral 0.25 protein_coding synonymous_variant LOW 180T>C Asp60Asp
M0137349 MEHOPDBF_00227 229281 3 Oral 0.25 protein_coding synonymous_variant LOW 186T>G Gly62Gly
M0137350 MEHOPDBF_00227 229404 3 Oral 0.25 protein_coding synonymous_variant LOW 309A>G Glu103Glu
M0137351 MEHOPDBF_00227 229483 3 Oral 0.25 protein_coding missense_variant MODERATE 388A>C Asn130His
M0137352 MEHOPDBF_00228 229742 3 Oral 0.25 protein_coding synonymous_variant LOW 195G>A Leu65Leu
M0137353 MEHOPDBF_00228 229766 3 Oral 0.25 protein_coding synonymous_variant LOW 219T>C Tyr73Tyr
M0137354 MEHOPDBF_00228 229803 3 Oral 0.25 protein_coding missense_variant MODERATE 256G>T Val86Phe
M0137355 MEHOPDBF_00228 229841 3 Oral 0.25 protein_coding synonymous_variant LOW 294C>T Ile98Ile
M0137356 MEHOPDBF_00228 230587 3 Oral 0.25 protein_coding missense_variant MODERATE 1040A>G Asn347Ser
M0137357 MEHOPDBF_00228 230589 3 Oral 0.25 protein_coding missense_variant MODERATE 1042A>C Ile348Leu
M0137358 MEHOPDBF_00228 230591 3 Oral 0.25 protein_coding synonymous_variant LOW 1044C>T Ile348Ile
M0137359 MEHOPDBF_00228 230936 3 Oral 0.25 protein_coding synonymous_variant LOW 1389A>G Ser463Ser
M0137360 MEHOPDBF_00228 230942 3 Oral 0.25 protein_coding synonymous_variant LOW 1395G>T Leu465Leu
M0137361 MEHOPDBF_00228 231119 3 Oral 0.25 protein_coding synonymous_variant LOW 1572A>G Gln524Gln
M0137362 MEHOPDBF_00228 231212 3 Oral 0.25 protein_coding synonymous_variant LOW 1665C>A Gly555Gly
M0137363 MEHOPDBF_00228 231257 3 Oral 0.25 protein_coding synonymous_variant LOW 1710T>C Phe570Phe
M0137364 MEHOPDBF_00228 231329 3 Oral 0.25 protein_coding synonymous_variant LOW 1782T>C Asn594Asn
M0137365 MEHOPDBF_00228 231422 3 Oral 0.25 protein_coding synonymous_variant LOW 1875C>T Gly625Gly
M0137366 MEHOPDBF_00228 231488 3 Oral 0.25 protein_coding synonymous_variant LOW 1941G>A Ser647Ser
M0137367 MEHOPDBF_00228 231533 3 Oral 0.25 protein_coding synonymous_variant LOW 1986T>G Gly662Gly
M0137368 MEHOPDBF_00228 231650 3 Oral 0.25 protein_coding synonymous_variant LOW 2103G>A Arg701Arg
M0137369 MEHOPDBF_00228 231706 3 Oral 0.25 protein_coding missense_variant MODERATE 2159G>C Gly720Ala
M0137370 MEHOPDBF_00228 231707 3 Oral 0.25 protein_coding synonymous_variant LOW 2160G>T Gly720Gly
M0137371 MEHOPDBF_00229 232177 3 Oral 0.25 protein_coding synonymous_variant LOW 249T>C Ser83Ser
M0137372 MEHOPDBF_00229 232180 3 Oral 0.25 protein_coding synonymous_variant LOW 252G>A Glu84Glu
M0137373 MEHOPDBF_00229 232420 3 Oral 0.25 protein_coding synonymous_variant LOW 492G>A Leu164Leu
M0137374 MEHOPDBF_00229 232504 3 Oral 0.25 protein_coding synonymous_variant LOW 576C>T Asp192Asp
M0137375 MEHOPDBF_00229 232522 3 Oral 0.25 protein_coding synonymous_variant LOW 594T>C Ser198Ser
M0137376 MEHOPDBF_00229 232533 3 Oral 0.25 protein_coding missense_variant MODERATE 605A>G Asn202Ser
M0137377 MEHOPDBF_00229 232660 3 Oral 0.25 protein_coding synonymous_variant LOW 732A>C Val244Val
M0137378 MEHOPDBF_00229 232825 3 Oral 0.25 protein_coding synonymous_variant LOW 897C>T Tyr299Tyr
M0137379 MEHOPDBF_00229 233075 3 Oral 0.25 protein_coding missense_variant MODERATE 1147A>G Ser383Gly
M0137380 MEHOPDBF_00229 233551 3 Oral 0.25 protein_coding synonymous_variant LOW 1623C>T Ser541Ser
M0137381 MEHOPDBF_00230 233724 3 Oral 0.25 protein_coding synonymous_variant LOW 18T>C Ile6Ile
M0137382 MEHOPDBF_00230 233730 3 Oral 0.25 protein_coding synonymous_variant LOW 24A>T Thr8Thr
M0137383 MEHOPDBF_00231 234091 3 Oral 0.25 protein_coding synonymous_variant LOW 90C>T Asp30Asp
M0137384 MEHOPDBF_00231 234136 3 Oral 0.25 protein_coding synonymous_variant LOW 135C>T Asp45Asp
M0137385 MEHOPDBF_00231 234223 3 Oral 0.25 protein_coding synonymous_variant LOW 222A>G Arg74Arg
M0137386 MEHOPDBF_00231 234280 3 Oral 0.25 protein_coding synonymous_variant LOW 279A>G Gly93Gly
M0137387 MEHOPDBF_00231 234298 3 Oral 0.25 protein_coding synonymous_variant LOW 297A>G Arg99Arg
M0137388 MEHOPDBF_00231 234464 3 Oral 0.25 protein_coding synonymous_variant LOW 463C>T Leu155Leu
M0137389 MEHOPDBF_00232 235094 3 Oral 0.25 protein_coding synonymous_variant LOW 507C>T Phe169Phe
M0137390 MEHOPDBF_00232 235133 3 Oral 0.25 protein_coding synonymous_variant LOW 546G>A Glu182Glu
M0137391 MEHOPDBF_00232 235229 3 Oral 0.25 protein_coding synonymous_variant LOW 642G>A Glu214Glu
M0137392 MEHOPDBF_00232 235244 3 Oral 0.25 protein_coding synonymous_variant LOW 657T>C Tyr219Tyr
M0137393 MEHOPDBF_00232 235265 3 Oral 0.25 protein_coding synonymous_variant LOW 678C>T Ser226Ser
M0137394 MEHOPDBF_00232 235397 3 Oral 0.25 protein_coding synonymous_variant LOW 810T>A Ala270Ala
M0137395 MEHOPDBF_00232 235466 3 Oral 0.25 protein_coding synonymous_variant LOW 879C>T Gly293Gly
M0137396 MEHOPDBF_00232 236309 3 Oral 0.25 protein_coding synonymous_variant LOW 1722C>T Asn574Asn
M0137397 MEHOPDBF_00233 237081 3 Oral 0.25 protein_coding synonymous_variant LOW 582A>G Gln194Gln
M0137398 MEHOPDBF_00238 240859 3 Oral 0.25 protein_coding missense_variant MODERATE 544T>A Tyr182Asn
M0137399 MEHOPDBF_00238 241242 3 Oral 0.25 protein_coding synonymous_variant LOW 927T>C Ala309Ala
M0137400 MEHOPDBF_00240 242289 3 Oral 0.25 protein_coding synonymous_variant LOW 486G>A Glu162Glu
M0137401 MEHOPDBF_00240 243903 3 Oral 0.25 protein_coding missense_variant MODERATE 2100A>T Glu700Asp
M0137402 MEHOPDBF_00241 244184 3 Oral 0.25 protein_coding synonymous_variant LOW 234T>C Asn78Asn
M0137403 MEHOPDBF_00241 244217 3 Oral 0.25 protein_coding synonymous_variant LOW 267A>T Thr89Thr
M0137404 MEHOPDBF_00241 244220 3 Oral 0.25 protein_coding synonymous_variant LOW 270A>C Ile90Ile
M0137405 MEHOPDBF_00242 244474 3 Oral 0.25 protein_coding missense_variant MODERATE 211A>G Met71Val
M0137406 MEHOPDBF_00359 373057 3 Oral 0.25 protein_coding synonymous_variant LOW 720A>G Glu240Glu
M0137407 MEHOPDBF_00359 373058 3 Oral 0.25 protein_coding synonymous_variant LOW 721C>T Leu241Leu
M0137408 MEHOPDBF_00359 373081 3 Oral 0.25 protein_coding synonymous_variant LOW 744C>T Leu248Leu
M0137409 MEHOPDBF_00359 373183 3 Oral 0.25 protein_coding synonymous_variant LOW 846A>G Glu282Glu
M0137410 MEHOPDBF_00359 373291 4 Oral 0.33 protein_coding synonymous_variant LOW 954A>G Glu318Glu
M0137411 MEHOPDBF_00359 373420 4 Oral 0.33 protein_coding synonymous_variant LOW 1083A>C Gly361Gly
M0137412 MEHOPDBF_00359 373864 4 Oral 0.33 protein_coding synonymous_variant LOW 1527C>T Asp509Asp
M0137413 MEHOPDBF_00359 373879 4 Oral 0.33 protein_coding synonymous_variant LOW 1542A>G Glu514Glu
M0137414 MEHOPDBF_00359 373900 4 Oral 0.33 protein_coding synonymous_variant LOW 1563C>T Ile521Ile
M0137415 MEHOPDBF_00359 373907 4 Oral 0.33 protein_coding synonymous_variant LOW 1570C>T Leu524Leu
M0137416 MEHOPDBF_00359 373961 4 Oral 0.33 protein_coding missense_variant MODERATE 1624T>C Ser542Pro
M0137417 MEHOPDBF_00359 374063 4 Oral 0.33 protein_coding missense_variant MODERATE 1726G>A Val576Met
M0137418 MEHOPDBF_00359 373535 3 Oral 0.25 protein_coding missense_variant MODERATE 1198A>T Thr400Ser
M0137419 MEHOPDBF_00359 373570 3 Oral 0.25 protein_coding synonymous_variant LOW 1233T>C Asp411Asp
M0137420 MEHOPDBF_00359 373606 3 Oral 0.25 protein_coding synonymous_variant LOW 1269T>G Ser423Ser
M0137421 MEHOPDBF_00359 373619 3 Oral 0.25 protein_coding synonymous_variant LOW 1282C>T Leu428Leu
M0137422 MEHOPDBF_00359 373708 3 Oral 0.25 protein_coding synonymous_variant LOW 1371T>C Gly457Gly
M0137423 MEHOPDBF_00359 374233 3 Oral 0.25 protein_coding synonymous_variant LOW 1896A>G Gly632Gly
M0137424 MEHOPDBF_00359 374248 3 Oral 0.25 protein_coding synonymous_variant LOW 1911A>C Ile637Ile
M0137425 MEHOPDBF_00359 374314 3 Oral 0.25 protein_coding synonymous_variant LOW 1977T>C Ala659Ala
M0137426 MEHOPDBF_00359 374320 3 Oral 0.25 protein_coding synonymous_variant LOW 1983T>G Thr661Thr
M0137427 MEHOPDBF_00359 374338 3 Oral 0.25 protein_coding synonymous_variant LOW 2001T>C Gly667Gly
M0137428 MEHOPDBF_00359 374356 3 Oral 0.25 protein_coding synonymous_variant LOW 2019T>A Val673Val
M0137429 MEHOPDBF_00211 217311 3 Oral 0.25 protein_coding synonymous_variant LOW 232T>C Leu78Leu
M0137430 MEHOPDBF_00211 217314 3 Oral 0.25 protein_coding missense_variant MODERATE 235A>G Lys79Glu
M0137431 MEHOPDBF_00211 217322 3 Oral 0.25 protein_coding synonymous_variant LOW 243G>A Val81Val
M0137432 MEHOPDBF_00212 217427 3 Oral 0.25 protein_coding missense_variant MODERATE 85G>A Val29Ile
M0137433 MEHOPDBF_00212 217435 3 Oral 0.25 protein_coding synonymous_variant LOW 93T>C Gly31Gly
M0137434 MEHOPDBF_00212 217558 3 Oral 0.25 protein_coding synonymous_variant LOW 216A>G Arg72Arg
M0137435 MEHOPDBF_00212 217622 3 Oral 0.25 protein_coding missense_variant MODERATE 280C>T Leu94Phe
M0137436 MEHOPDBF_00212 217873 3 Oral 0.25 protein_coding synonymous_variant LOW 531T>C Asn177Asn
M0137437 MEHOPDBF_00212 217949 3 Oral 0.25 protein_coding missense_variant MODERATE 607A>G Lys203Glu
M0137438 MEHOPDBF_00213 218335 3 Oral 0.25 protein_coding synonymous_variant LOW 81G>A Gln27Gln
M0137439 MEHOPDBF_00213 218420 3 Oral 0.25 protein_coding missense_variant MODERATE 166A>G Met56Val
M0137440 MEHOPDBF_00213 218494 3 Oral 0.25 protein_coding synonymous_variant LOW 240A>T Ala80Ala
M0137441 MEHOPDBF_00215 219785 3 Oral 0.25 protein_coding missense_variant MODERATE 329A>G Gln110Arg
M0137442 MEHOPDBF_00243 244929 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -71C>T None
M0137443 MEHOPDBF_00243 245047 3 Oral 0.25 protein_coding synonymous_variant LOW 48T>C His16His
M0137444 MEHOPDBF_00243 245068 3 Oral 0.25 protein_coding synonymous_variant LOW 69C>A Ser23Ser
M0137445 MEHOPDBF_00243 245107 3 Oral 0.25 protein_coding synonymous_variant LOW 108G>A Gln36Gln
M0137446 MEHOPDBF_00244 245625 3 Oral 0.25 protein_coding synonymous_variant LOW 222C>A Ala74Ala
M0137447 MEHOPDBF_00244 245641 3 Oral 0.25 protein_coding missense_variant MODERATE 238A>C Ile80Leu
M0137448 MEHOPDBF_00245 245773 3 Oral 0.25 protein_coding synonymous_variant LOW 105G>A Thr35Thr
M0137449 MEHOPDBF_00245 245953 3 Oral 0.25 protein_coding synonymous_variant LOW 285G>A Thr95Thr
M0137450 MEHOPDBF_00245 245962 3 Oral 0.25 protein_coding synonymous_variant LOW 294C>T Ser98Ser
M0137451 MEHOPDBF_00245 246001 3 Oral 0.25 protein_coding synonymous_variant LOW 333C>T Asp111Asp
M0137452 MEHOPDBF_00245 246031 3 Oral 0.25 protein_coding synonymous_variant LOW 363A>G Arg121Arg
M0137453 MEHOPDBF_00245 246055 3 Oral 0.25 protein_coding synonymous_variant LOW 387A>C Ala129Ala
M0137454 MEHOPDBF_00245 246154 3 Oral 0.25 protein_coding synonymous_variant LOW 486T>G Val162Val
M0137455 MEHOPDBF_00245 246228 3 Oral 0.25 protein_coding missense_variant MODERATE 560C>T Thr187Ile
M0137456 MEHOPDBF_00245 246412 3 Oral 0.25 protein_coding synonymous_variant LOW 744G>A Lys248Lys
M0137457 MEHOPDBF_00245 246460 3 Oral 0.25 protein_coding synonymous_variant LOW 792C>T Ser264Ser
M0137458 MEHOPDBF_00245 246718 3 Oral 0.25 protein_coding synonymous_variant LOW 1050C>T Asn350Asn
M0137459 MEHOPDBF_00245 246823 3 Oral 0.25 protein_coding synonymous_variant LOW 1155A>G Ala385Ala
M0137460 MEHOPDBF_00245 246913 3 Oral 0.25 protein_coding synonymous_variant LOW 1245C>A Thr415Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
MEHOPDBF_00320 AKT46580.1|GT28 99.2 1.5e-275 1 383 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term