Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3381
  Reference Plasmid   MGYG000299069__MGYG000299069_82
  Reference Plasmid Size   4856
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0137949 KPOBGPKD_00001 66 7 Oral 0.78 protein_coding missense_variant MODERATE 22G>A Val8Ile
M0137950 KPOBGPKD_00001 329 6 Oral 0.67 protein_coding synonymous_variant LOW 285C>A Thr95Thr
M0137951 KPOBGPKD_00001 360 5 Oral 0.56 protein_coding missense_variant MODERATE 316A>G Ile106Val
M0137952 KPOBGPKD_00001 455 7 Oral 0.78 protein_coding synonymous_variant LOW 411T>C Val137Val
M0137953 KPOBGPKD_00001 461 8 Oral 0.89 protein_coding synonymous_variant LOW 417G>A Lys139Lys
M0137954 KPOBGPKD_00001 670 9 Oral 1.00 protein_coding missense_variant MODERATE 626T>C Val209Ala
M0137955 KPOBGPKD_00001 689 9 Oral 1.00 protein_coding synonymous_variant LOW 645A>G Lys215Lys
M0137956 KPOBGPKD_00001 701 9 Oral 1.00 protein_coding synonymous_variant LOW 657T>A Ala219Ala
M0137957 KPOBGPKD_00001 722 3 Oral 0.33 protein_coding synonymous_variant LOW 678G>A Lys226Lys
M0137958 KPOBGPKD_00001 803 9 Oral 1.00 protein_coding synonymous_variant LOW 759A>G Ser253Ser
M0137959 KPOBGPKD_00001 912 8 Oral 0.89 protein_coding missense_variant MODERATE 868G>A Ala290Thr
M0137960 KPOBGPKD_00001 938 8 Oral 0.89 protein_coding synonymous_variant LOW 894T>C Asp298Asp
M0137961 KPOBGPKD_00001 974 6 Oral 0.67 protein_coding synonymous_variant LOW 930T>C Phe310Phe
M0137962 KPOBGPKD_00001 983 9 Oral 1.00 protein_coding synonymous_variant LOW 939G>A Val313Val
M0137963 KPOBGPKD_00001 1106 3 Oral 0.33 protein_coding synonymous_variant LOW 1062G>A Gly354Gly
M0137964 KPOBGPKD_00001 1178 9 Oral 1.00 protein_coding synonymous_variant LOW 1134T>C Gly378Gly
M0137965 KPOBGPKD_00001 1193 7 Oral 0.78 protein_coding synonymous_variant LOW 1149A>C Thr383Thr
M0137966 KPOBGPKD_00001 1256 5 Oral 0.56 protein_coding synonymous_variant LOW 1212T>C Leu404Leu
M0137967 KPOBGPKD_00001 1257 5 Oral 0.56 protein_coding missense_variant MODERATE 1213A>C Asn405His
M0137968 KPOBGPKD_00001 1265 4 Oral 0.44 protein_coding synonymous_variant LOW 1221C>T Asn407Asn
M0137969 KPOBGPKD_00001 1325 6 Oral 0.67 protein_coding synonymous_variant LOW 1281C>T Ala427Ala
M0137970 KPOBGPKD_00001 1436 4 Oral 0.44 protein_coding synonymous_variant LOW 1392A>T Ser464Ser
M0137971 KPOBGPKD_00001 1451 4 Oral 0.44 protein_coding synonymous_variant LOW 1407C>T Asn469Asn
M0137972 KPOBGPKD_00001 1454 3 Oral 0.33 protein_coding synonymous_variant LOW 1410A>T Thr470Thr
M0137973 KPOBGPKD_00001 1484 4 Oral 0.44 protein_coding synonymous_variant LOW 1440T>C Ile480Ile
M0137974 KPOBGPKD_00001 1517 4 Oral 0.44 protein_coding synonymous_variant LOW 1473A>G Glu491Glu
M0137975 KPOBGPKD_00001 1559 3 Oral 0.33 protein_coding synonymous_variant LOW 1515C>T His505His
M0137976 KPOBGPKD_00001 1595 3 Oral 0.33 protein_coding synonymous_variant LOW 1551T>C Arg517Arg
M0137977 KPOBGPKD_00001 1604 6 Oral 0.67 protein_coding synonymous_variant LOW 1560G>A Leu520Leu
M0137978 KPOBGPKD_00001 1616 5 Oral 0.56 protein_coding synonymous_variant LOW 1572C>T Pro524Pro
M0137979 KPOBGPKD_00001 1637 3 Oral 0.33 protein_coding synonymous_variant LOW 1593T>A Thr531Thr
M0137980 KPOBGPKD_00001 1775 8 Oral 0.89 protein_coding synonymous_variant LOW 1731T>C Gly577Gly
M0137981 KPOBGPKD_00001 1826 4 Oral 0.44 protein_coding synonymous_variant LOW 1782G>A Glu594Glu
M0137982 KPOBGPKD_00001 1851 9 Oral 1.00 protein_coding missense_variant MODERATE 1807T>C Phe603Leu
M0137983 KPOBGPKD_00001 1880 6 Oral 0.67 protein_coding synonymous_variant LOW 1836A>G Lys612Lys
M0137984 KPOBGPKD_00001 1917 3 Oral 0.33 protein_coding missense_variant MODERATE 1873G>A Ala625Thr
M0137985 KPOBGPKD_00001 1967 7 Oral 0.78 protein_coding synonymous_variant LOW 1923T>C Asn641Asn
M0137986 KPOBGPKD_00001 2186 6 Oral 0.67 protein_coding synonymous_variant LOW 2142T>C Ala714Ala
M0137987 KPOBGPKD_00001 2216 3 Oral 0.33 protein_coding synonymous_variant LOW 2172C>T Tyr724Tyr
M0137988 KPOBGPKD_00001 2297 3 Oral 0.33 protein_coding synonymous_variant LOW 2253A>T Gly751Gly
M0137989 KPOBGPKD_00001 2303 3 Oral 0.33 protein_coding synonymous_variant LOW 2259T>C Ser753Ser
M0137990 KPOBGPKD_00001 2312 3 Oral 0.33 protein_coding synonymous_variant LOW 2268T>C Asn756Asn
M0137991 KPOBGPKD_00001 2330 4 Oral 0.44 protein_coding synonymous_variant LOW 2286A>G Thr762Thr
M0137992 KPOBGPKD_00001 2366 4 Oral 0.44 protein_coding synonymous_variant LOW 2322C>T Tyr774Tyr
M0137993 KPOBGPKD_00001 2381 8 Oral 0.89 protein_coding synonymous_variant LOW 2337A>G Gln779Gln
M0137994 KPOBGPKD_00001 2387 3 Oral 0.33 protein_coding synonymous_variant LOW 2343C>T Asn781Asn
M0137995 KPOBGPKD_00002 2505 3 Oral 0.33 protein_coding synonymous_variant LOW 1281G>A Gln427Gln
M0137996 KPOBGPKD_00002 2541 7 Oral 0.78 protein_coding synonymous_variant LOW 1245A>G Ala415Ala
M0137997 KPOBGPKD_00002 2550 6 Oral 0.67 protein_coding synonymous_variant LOW 1236C>T Val412Val
M0137998 KPOBGPKD_00002 2565 5 Oral 0.56 protein_coding synonymous_variant LOW 1221G>A Ala407Ala
M0137999 KPOBGPKD_00002 2652 6 Oral 0.67 protein_coding synonymous_variant LOW 1134T>A Val378Val
M0138000 KPOBGPKD_00002 2991 3 Oral 0.33 protein_coding synonymous_variant LOW 795C>T Asp265Asp
M0138001 KPOBGPKD_00002 2996 8 Oral 0.89 protein_coding missense_variant MODERATE 790T>G Ser264Ala
M0138002 KPOBGPKD_00002 3084 7 Oral 0.78 protein_coding synonymous_variant LOW 702T>C Asn234Asn
M0138003 KPOBGPKD_00002 3300 8 Oral 0.89 protein_coding synonymous_variant LOW 486A>T Ser162Ser
M0138004 KPOBGPKD_00002 3316 8 Oral 0.89 protein_coding missense_variant MODERATE 470T>C Val157Ala
M0138005 KPOBGPKD_00002 3384 6 Oral 0.67 protein_coding synonymous_variant LOW 402G>A Thr134Thr
M0138006 KPOBGPKD_00002 3390 7 Oral 0.78 protein_coding synonymous_variant LOW 396T>C Asp132Asp
M0138007 KPOBGPKD_00002 3411 4 Oral 0.44 protein_coding synonymous_variant LOW 375A>G Glu125Glu
M0138008 KPOBGPKD_00002 3417 5 Oral 0.56 protein_coding synonymous_variant LOW 369C>T Asn123Asn
M0138009 KPOBGPKD_00002 3450 4 Oral 0.44 protein_coding synonymous_variant LOW 336T>C Ser112Ser
M0138010 KPOBGPKD_00002 3480 6 Oral 0.67 protein_coding synonymous_variant LOW 306A>G Thr102Thr
M0138011 KPOBGPKD_00002 3516 6 Oral 0.67 protein_coding synonymous_variant LOW 270C>T Phe90Phe
M0138012 KPOBGPKD_00002 3519 5 Oral 0.56 protein_coding synonymous_variant LOW 267A>G Gln89Gln
M0138013 KPOBGPKD_00002 3657 5 Oral 0.56 protein_coding synonymous_variant LOW 129G>A Arg43Arg
M0138014 KPOBGPKD_00003 3911 3 Oral 0.33 protein_coding synonymous_variant LOW 834T>A Ile278Ile
M0138015 KPOBGPKD_00003 3923 4 Oral 0.44 protein_coding synonymous_variant LOW 822C>T Cys274Cys
M0138016 KPOBGPKD_00003 4166 3 Oral 0.33 protein_coding synonymous_variant LOW 579T>A Ser193Ser
M0138017 KPOBGPKD_00003 4256 3 Oral 0.33 protein_coding synonymous_variant LOW 489T>C Tyr163Tyr
M0138018 KPOBGPKD_00003 4295 3 Oral 0.33 protein_coding synonymous_variant LOW 450C>T Ala150Ala
M0138019 KPOBGPKD_00001 173 3 Oral 0.33 protein_coding synonymous_variant LOW 129T>C Ser43Ser
M0138020 KPOBGPKD_00001 923 3 Oral 0.33 protein_coding missense_variant MODERATE 879T>G Asp293Glu
M0138021 KPOBGPKD_00001 1112 3 Oral 0.33 protein_coding synonymous_variant LOW 1068C>T Asn356Asn
M0138022 KPOBGPKD_00001 1280 3 Oral 0.33 protein_coding synonymous_variant LOW 1236G>A Lys412Lys
M0138023 KPOBGPKD_00001 1705 7 Oral 0.78 protein_coding missense_variant MODERATE 1661T>C Ile554Thr
M0138024 KPOBGPKD_00001 1706 4 Oral 0.44 protein_coding missense_variant MODERATE 1662A>G Ile554Met
M0138025 KPOBGPKD_00001 1769 4 Oral 0.44 protein_coding synonymous_variant LOW 1725T>A Ile575Ile
M0138026 KPOBGPKD_00001 2033 6 Oral 0.67 protein_coding synonymous_variant LOW 1989T>A Pro663Pro
M0138027 KPOBGPKD_00001 2066 3 Oral 0.33 protein_coding synonymous_variant LOW 2022C>T Phe674Phe
M0138028 KPOBGPKD_00001 2452 4 Oral 0.44 protein_coding downstream_gene_variant MODIFIER *41G>T None
M0138029 KPOBGPKD_00001 2480 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *69C>T None
M0138030 KPOBGPKD_00002 2487 3 Oral 0.33 protein_coding synonymous_variant LOW 1299C>T Ala433Ala
M0138031 KPOBGPKD_00002 2601 3 Oral 0.33 protein_coding synonymous_variant LOW 1185G>A Lys395Lys
M0138032 KPOBGPKD_00002 2715 4 Oral 0.44 protein_coding synonymous_variant LOW 1071T>C Val357Val
M0138033 KPOBGPKD_00002 2724 3 Oral 0.33 protein_coding synonymous_variant LOW 1062A>G Gln354Gln
M0138034 KPOBGPKD_00002 2994 4 Oral 0.44 protein_coding synonymous_variant LOW 792T>C Ser264Ser
M0138035 KPOBGPKD_00002 3105 4 Oral 0.44 protein_coding synonymous_variant LOW 681A>T Val227Val
M0138036 KPOBGPKD_00002 3147 3 Oral 0.33 protein_coding synonymous_variant LOW 639T>G Val213Val
M0138037 KPOBGPKD_00002 3318 4 Oral 0.44 protein_coding synonymous_variant LOW 468A>T Thr156Thr
M0138038 KPOBGPKD_00002 3618 4 Oral 0.44 protein_coding synonymous_variant LOW 168A>G Arg56Arg
M0138039 KPOBGPKD_00001 608 3 Oral 0.33 protein_coding synonymous_variant LOW 564A>G Glu188Glu
M0138040 KPOBGPKD_00002 2859 4 Oral 0.44 protein_coding synonymous_variant LOW 927C>T Leu309Leu
M0138041 KPOBGPKD_00002 3654 3 Oral 0.33 protein_coding synonymous_variant LOW 132G>A Ala44Ala
M0138042 KPOBGPKD_00002 3779 4 Oral 0.44 protein_coding missense_variant MODERATE 7A>G Ile3Val
M0138043 KPOBGPKD_00003 3857 3 Oral 0.33 protein_coding synonymous_variant LOW 888C>T Ile296Ile
M0138044 KPOBGPKD_00001 1034 4 Oral 0.44 protein_coding synonymous_variant LOW 990G>A Val330Val
M0138045 KPOBGPKD_00002 3367 4 Oral 0.44 protein_coding missense_variant MODERATE 419G>A Arg140Lys
M0138046 KPOBGPKD_00001 281 3 Oral 0.33 protein_coding synonymous_variant LOW 237A>G Lys79Lys
M0138047 KPOBGPKD_00001 488 3 Oral 0.33 protein_coding synonymous_variant LOW 444T>C Ser148Ser
M0138048 KPOBGPKD_00001 2153 3 Oral 0.33 protein_coding synonymous_variant LOW 2109C>T Asn703Asn
M0138049 KPOBGPKD_00001 2177 3 Oral 0.33 protein_coding synonymous_variant LOW 2133C>T Arg711Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term