Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3386
  Reference Plasmid   MGYG000299176__MGYG000299176_149
  Reference Plasmid Size   12998
  Reference Plasmid GC Content   0.52
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0139443 EDPBNKNA_00005 2886 4 Oral 0.36 protein_coding synonymous_variant LOW 912T>C Val304Val
M0139444 EDPBNKNA_00007 5372 6 Oral 0.55 protein_coding synonymous_variant LOW 1596C>T Leu532Leu
M0139445 EDPBNKNA_00007 5381 7 Oral 0.64 protein_coding synonymous_variant LOW 1587A>G Leu529Leu
M0139446 EDPBNKNA_00007 6689 6 Oral 0.55 protein_coding synonymous_variant LOW 279T>C Leu93Leu
M0139447 EDPBNKNA_00014 11132 5 Oral 0.45 protein_coding missense_variant MODERATE 682A>G Thr228Ala
M0139448 EDPBNKNA_00010 12969 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4626A>C None
M0139449 EDPBNKNA_00012 8962 8 Oral 0.73 protein_coding synonymous_variant LOW 603T>G Gly201Gly
M0139450 EDPBNKNA_00012 9022 7 Oral 0.64 protein_coding synonymous_variant LOW 543T>G Val181Val
M0139451 EDPBNKNA_00012 9046 8 Oral 0.73 protein_coding synonymous_variant LOW 519C>T Asp173Asp
M0139452 EDPBNKNA_00012 9091 8 Oral 0.73 protein_coding synonymous_variant LOW 474T>C Ser158Ser
M0139453 EDPBNKNA_00012 9097 7 Oral 0.64 protein_coding synonymous_variant LOW 468T>C Ala156Ala
M0139454 EDPBNKNA_00012 9108 7 Oral 0.64 protein_coding synonymous_variant LOW 457T>C Leu153Leu
M0139455 EDPBNKNA_00012 9112 7 Oral 0.64 protein_coding synonymous_variant LOW 453T>C Ala151Ala
M0139456 EDPBNKNA_00012 9141 8 Oral 0.73 protein_coding synonymous_variant LOW 424C>T Leu142Leu
M0139457 EDPBNKNA_00012 9196 8 Oral 0.73 protein_coding synonymous_variant LOW 369G>A Ala123Ala
M0139458 EDPBNKNA_00012 9304 7 Oral 0.64 protein_coding synonymous_variant LOW 261C>T Arg87Arg
M0139459 EDPBNKNA_00012 9327 7 Oral 0.64 protein_coding missense_variant MODERATE 238A>C Lys80Gln
M0139460 EDPBNKNA_00012 9339 6 Oral 0.55 protein_coding missense_variant MODERATE 226G>T Ala76Ser
M0139461 EDPBNKNA_00012 9376 8 Oral 0.73 protein_coding synonymous_variant LOW 189T>G Thr63Thr
M0139462 EDPBNKNA_00012 9511 4 Oral 0.36 protein_coding synonymous_variant LOW 54T>C Gly18Gly
M0139463 EDPBNKNA_00007 9665 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -2698C>G None
M0139464 EDPBNKNA_00007 9671 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2704T>C None
M0139465 EDPBNKNA_00007 9688 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -2721A>T None
M0139466 EDPBNKNA_00007 9761 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -2794G>T None
M0139467 EDPBNKNA_00007 9762 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -2795A>G None
M0139468 EDPBNKNA_00007 9765 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -2798A>C None
M0139469 EDPBNKNA_00007 9804 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2837G>A None
M0139470 EDPBNKNA_00007 9813 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -2846G>A None
M0139471 EDPBNKNA_00007 9821 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2854C>T None
M0139472 EDPBNKNA_00007 9829 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2862G>C None
M0139473 EDPBNKNA_00007 9837 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2870C>T None
M0139474 EDPBNKNA_00007 9838 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2871G>A None
M0139475 EDPBNKNA_00007 9849 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2882T>G None
M0139476 EDPBNKNA_00007 9852 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2885C>T None
M0139477 EDPBNKNA_00007 9895 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2928G>A None
M0139478 EDPBNKNA_00007 9916 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2949A>C None
M0139479 EDPBNKNA_00013 10328 4 Oral 0.36 protein_coding synonymous_variant LOW 288G>T Ala96Ala
M0139480 EDPBNKNA_00014 10822 3 Oral 0.27 protein_coding synonymous_variant LOW 372C>T Ser124Ser
M0139481 EDPBNKNA_00014 10864 3 Oral 0.27 protein_coding synonymous_variant LOW 414C>T Ser138Ser
M0139482 EDPBNKNA_00014 10987 3 Oral 0.27 protein_coding synonymous_variant LOW 537G>A Glu179Glu
M0139483 EDPBNKNA_00014 10993 3 Oral 0.27 protein_coding synonymous_variant LOW 543C>G Ala181Ala
M0139484 EDPBNKNA_00014 10999 4 Oral 0.36 protein_coding synonymous_variant LOW 549T>G Thr183Thr
M0139485 EDPBNKNA_00014 11000 3 Oral 0.27 protein_coding synonymous_variant LOW 550C>T Leu184Leu
M0139486 EDPBNKNA_00014 11011 4 Oral 0.36 protein_coding synonymous_variant LOW 561A>C Val187Val
M0139487 EDPBNKNA_00014 11015 4 Oral 0.36 protein_coding missense_variant MODERATE 565A>G Met189Val
M0139488 EDPBNKNA_00014 11016 4 Oral 0.36 protein_coding missense_variant MODERATE 566T>A Met189Lys
M0139489 EDPBNKNA_00014 11041 3 Oral 0.27 protein_coding synonymous_variant LOW 591G>T Gly197Gly
M0139490 EDPBNKNA_00014 11123 4 Oral 0.36 protein_coding missense_variant MODERATE 673T>C Phe225Leu
M0139491 EDPBNKNA_00014 11392 3 Oral 0.27 protein_coding synonymous_variant LOW 942C>G Gly314Gly
M0139492 EDPBNKNA_00014 11412 3 Oral 0.27 protein_coding missense_variant MODERATE 962A>C Asn321Thr
M0139493 EDPBNKNA_00014 11495 3 Oral 0.27 protein_coding missense_variant MODERATE 1045G>T Ala349Ser
M0139494 EDPBNKNA_00014 11719 5 Oral 0.45 protein_coding synonymous_variant LOW 1269T>C Leu423Leu
M0139495 EDPBNKNA_00007 11739 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4772A>G None
M0139496 EDPBNKNA_00007 11892 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4925A>G None
M0139497 EDPBNKNA_00001 77 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -279T>C None
M0139498 EDPBNKNA_00001 272 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -84A>G None
M0139499 EDPBNKNA_00001 355 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1A>G None
M0139500 EDPBNKNA_00002 637 3 Oral 0.27 protein_coding synonymous_variant LOW 1185C>G Thr395Thr
M0139501 EDPBNKNA_00002 784 3 Oral 0.27 protein_coding synonymous_variant LOW 1038A>T Ser346Ser
M0139502 EDPBNKNA_00002 946 4 Oral 0.36 protein_coding synonymous_variant LOW 876G>A Pro292Pro
M0139503 EDPBNKNA_00002 1004 4 Oral 0.36 protein_coding missense_variant MODERATE 818A>G Glu273Gly
M0139504 EDPBNKNA_00002 1174 4 Oral 0.36 protein_coding synonymous_variant LOW 648T>C Pro216Pro
M0139505 EDPBNKNA_00002 1201 3 Oral 0.27 protein_coding synonymous_variant LOW 621A>G Glu207Glu
M0139506 EDPBNKNA_00002 1239 4 Oral 0.36 protein_coding missense_variant MODERATE 583T>A Ser195Thr
M0139507 EDPBNKNA_00002 1240 3 Oral 0.27 protein_coding missense_variant MODERATE 582G>T Arg194Ser
M0139508 EDPBNKNA_00002 1242 3 Oral 0.27 protein_coding synonymous_variant LOW 580A>C Arg194Arg
M0139509 EDPBNKNA_00002 1276 3 Oral 0.27 protein_coding synonymous_variant LOW 546A>G Glu182Glu
M0139510 EDPBNKNA_00002 1429 4 Oral 0.36 protein_coding synonymous_variant LOW 393C>A Ala131Ala
M0139511 EDPBNKNA_00002 1534 4 Oral 0.36 protein_coding synonymous_variant LOW 288C>A Ala96Ala
M0139512 EDPBNKNA_00002 1537 3 Oral 0.27 protein_coding missense_variant MODERATE 285A>T Glu95Asp
M0139513 EDPBNKNA_00002 1540 3 Oral 0.27 protein_coding synonymous_variant LOW 282C>T Leu94Leu
M0139514 EDPBNKNA_00002 1622 4 Oral 0.36 protein_coding missense_variant MODERATE 200A>G Asp67Gly
M0139515 EDPBNKNA_00002 1696 4 Oral 0.36 protein_coding synonymous_variant LOW 126A>G Glu42Glu
M0139516 EDPBNKNA_00002 1774 4 Oral 0.36 protein_coding synonymous_variant LOW 48T>C Gly16Gly
M0139517 EDPBNKNA_00003 1938 3 Oral 0.27 protein_coding missense_variant MODERATE 218T>C Val73Ala
M0139518 EDPBNKNA_00003 1984 4 Oral 0.36 protein_coding missense_variant MODERATE 172A>G Thr58Ala
M0139519 EDPBNKNA_00003 2026 5 Oral 0.45 protein_coding missense_variant MODERATE 130G>A Ala44Thr
M0139520 EDPBNKNA_00004 2433 4 Oral 0.36 protein_coding synonymous_variant LOW 306T>C Ala102Ala
M0139521 EDPBNKNA_00004 2499 5 Oral 0.45 protein_coding synonymous_variant LOW 240T>C Arg80Arg
M0139522 EDPBNKNA_00004 2514 4 Oral 0.36 protein_coding synonymous_variant LOW 225A>G Arg75Arg
M0139523 EDPBNKNA_00004 2517 4 Oral 0.36 protein_coding synonymous_variant LOW 222C>T Ala74Ala
M0139524 EDPBNKNA_00004 2553 5 Oral 0.45 protein_coding synonymous_variant LOW 186C>T Leu62Leu
M0139525 EDPBNKNA_00004 2568 4 Oral 0.36 protein_coding synonymous_variant LOW 171G>C Ser57Ser
M0139526 EDPBNKNA_00004 2613 4 Oral 0.36 protein_coding synonymous_variant LOW 126T>C Ala42Ala
M0139527 EDPBNKNA_00004 2628 3 Oral 0.27 protein_coding synonymous_variant LOW 111C>T Ser37Ser
M0139528 EDPBNKNA_00004 2678 5 Oral 0.45 protein_coding missense_variant MODERATE 61T>C Phe21Leu
M0139529 EDPBNKNA_00005 2868 3 Oral 0.27 protein_coding synonymous_variant LOW 930C>T Arg310Arg
M0139530 EDPBNKNA_00005 2877 5 Oral 0.45 protein_coding synonymous_variant LOW 921A>G Val307Val
M0139531 EDPBNKNA_00005 2934 4 Oral 0.36 protein_coding synonymous_variant LOW 864G>T Gly288Gly
M0139532 EDPBNKNA_00005 3031 5 Oral 0.45 protein_coding missense_variant MODERATE 767A>G Asn256Ser
M0139533 EDPBNKNA_00005 3033 4 Oral 0.36 protein_coding synonymous_variant LOW 765G>A Leu255Leu
M0139534 EDPBNKNA_00005 3099 3 Oral 0.27 protein_coding synonymous_variant LOW 699T>C Ser233Ser
M0139535 EDPBNKNA_00005 3105 5 Oral 0.45 protein_coding synonymous_variant LOW 693A>C Pro231Pro
M0139536 EDPBNKNA_00005 3147 4 Oral 0.36 protein_coding synonymous_variant LOW 651G>A Thr217Thr
M0139537 EDPBNKNA_00005 3159 4 Oral 0.36 protein_coding synonymous_variant LOW 639A>G Ser213Ser
M0139538 EDPBNKNA_00005 3177 5 Oral 0.45 protein_coding synonymous_variant LOW 621C>T Ala207Ala
M0139539 EDPBNKNA_00005 3186 3 Oral 0.27 protein_coding synonymous_variant LOW 612C>T Phe204Phe
M0139540 EDPBNKNA_00005 3189 5 Oral 0.45 protein_coding synonymous_variant LOW 609T>C Val203Val
M0139541 EDPBNKNA_00005 3192 5 Oral 0.45 protein_coding synonymous_variant LOW 606C>G Val202Val
M0139542 EDPBNKNA_00005 3195 5 Oral 0.45 protein_coding synonymous_variant LOW 603A>T Pro201Pro
M0139543 EDPBNKNA_00005 3201 5 Oral 0.45 protein_coding synonymous_variant LOW 597A>G Leu199Leu
M0139544 EDPBNKNA_00005 3204 5 Oral 0.45 protein_coding synonymous_variant LOW 594T>C Ile198Ile
M0139545 EDPBNKNA_00005 3207 5 Oral 0.45 protein_coding synonymous_variant LOW 591A>C Ser197Ser
M0139546 EDPBNKNA_00005 3267 4 Oral 0.36 protein_coding synonymous_variant LOW 531C>T Leu177Leu
M0139547 EDPBNKNA_00005 3270 4 Oral 0.36 protein_coding synonymous_variant LOW 528A>C Leu176Leu
M0139548 EDPBNKNA_00005 3324 4 Oral 0.36 protein_coding synonymous_variant LOW 474T>A Ala158Ala
M0139549 EDPBNKNA_00005 3327 4 Oral 0.36 protein_coding synonymous_variant LOW 471G>C Arg157Arg
M0139550 EDPBNKNA_00005 3330 4 Oral 0.36 protein_coding synonymous_variant LOW 468A>G Glu156Glu
M0139551 EDPBNKNA_00005 3345 4 Oral 0.36 protein_coding synonymous_variant LOW 453A>G Ala151Ala
M0139552 EDPBNKNA_00005 3348 4 Oral 0.36 protein_coding synonymous_variant LOW 450T>C Ile150Ile
M0139553 EDPBNKNA_00005 3357 4 Oral 0.36 protein_coding synonymous_variant LOW 441T>C Ala147Ala
M0139554 EDPBNKNA_00005 3363 4 Oral 0.36 protein_coding synonymous_variant LOW 435A>G Glu145Glu
M0139555 EDPBNKNA_00005 3369 4 Oral 0.36 protein_coding synonymous_variant LOW 429C>G Gly143Gly
M0139556 EDPBNKNA_00005 3372 4 Oral 0.36 protein_coding synonymous_variant LOW 426T>C Ile142Ile
M0139557 EDPBNKNA_00005 3375 4 Oral 0.36 protein_coding synonymous_variant LOW 423C>T Ile141Ile
M0139558 EDPBNKNA_00005 3378 4 Oral 0.36 protein_coding synonymous_variant LOW 420G>A Gly140Gly
M0139559 EDPBNKNA_00005 3390 4 Oral 0.36 protein_coding synonymous_variant LOW 408T>C Ile136Ile
M0139560 EDPBNKNA_00005 3402 4 Oral 0.36 protein_coding synonymous_variant LOW 396T>C Phe132Phe
M0139561 EDPBNKNA_00005 3426 4 Oral 0.36 protein_coding synonymous_variant LOW 372C>T Ala124Ala
M0139562 EDPBNKNA_00005 3435 3 Oral 0.27 protein_coding synonymous_variant LOW 363C>T Pro121Pro
M0139563 EDPBNKNA_00005 3453 3 Oral 0.27 protein_coding synonymous_variant LOW 345G>A Glu115Glu
M0139564 EDPBNKNA_00005 3591 4 Oral 0.36 protein_coding synonymous_variant LOW 207T>C Ile69Ile
M0139565 EDPBNKNA_00006 4028 4 Oral 0.36 protein_coding synonymous_variant LOW 327A>G Lys109Lys
M0139566 EDPBNKNA_00007 4493 3 Oral 0.27 protein_coding synonymous_variant LOW 2475C>G Arg825Arg
M0139567 EDPBNKNA_00007 4889 4 Oral 0.36 protein_coding synonymous_variant LOW 2079C>T Tyr693Tyr
M0139568 EDPBNKNA_00007 4940 5 Oral 0.45 protein_coding synonymous_variant LOW 2028G>C Ala676Ala
M0139569 EDPBNKNA_00007 4952 5 Oral 0.45 protein_coding synonymous_variant LOW 2016C>T Leu672Leu
M0139570 EDPBNKNA_00007 5089 3 Oral 0.27 protein_coding synonymous_variant LOW 1879C>T Leu627Leu
M0139571 EDPBNKNA_00007 5186 6 Oral 0.55 protein_coding synonymous_variant LOW 1782C>A Ser594Ser
M0139572 EDPBNKNA_00007 5195 5 Oral 0.45 protein_coding synonymous_variant LOW 1773T>C Val591Val
M0139573 EDPBNKNA_00007 5564 4 Oral 0.36 protein_coding synonymous_variant LOW 1404C>T His468His
M0139574 EDPBNKNA_00007 5597 7 Oral 0.64 protein_coding synonymous_variant LOW 1371T>C His457His
M0139575 EDPBNKNA_00007 5683 7 Oral 0.64 protein_coding synonymous_variant LOW 1285T>C Leu429Leu
M0139576 EDPBNKNA_00007 5726 7 Oral 0.64 protein_coding synonymous_variant LOW 1242A>C Ala414Ala
M0139577 EDPBNKNA_00007 5875 6 Oral 0.55 protein_coding missense_variant MODERATE 1093T>G Ser365Ala
M0139578 EDPBNKNA_00007 5891 6 Oral 0.55 protein_coding synonymous_variant LOW 1077T>C His359His
M0139579 EDPBNKNA_00007 5960 3 Oral 0.27 protein_coding synonymous_variant LOW 1008G>C Ala336Ala
M0139580 EDPBNKNA_00007 6026 3 Oral 0.27 protein_coding missense_variant MODERATE 942A>G Ile314Met
M0139581 EDPBNKNA_00007 6380 5 Oral 0.45 protein_coding synonymous_variant LOW 588G>A Glu196Glu
M0139582 EDPBNKNA_00007 6413 4 Oral 0.36 protein_coding synonymous_variant LOW 555T>A Pro185Pro
M0139583 EDPBNKNA_00007 6446 8 Oral 0.73 protein_coding synonymous_variant LOW 522A>G Thr174Thr
M0139584 EDPBNKNA_00007 6605 7 Oral 0.64 protein_coding synonymous_variant LOW 363G>A Lys121Lys
M0139585 EDPBNKNA_00007 6704 7 Oral 0.64 protein_coding synonymous_variant LOW 264G>A Gly88Gly
M0139586 EDPBNKNA_00007 6707 7 Oral 0.64 protein_coding synonymous_variant LOW 261A>G Glu87Glu
M0139587 EDPBNKNA_00007 6710 7 Oral 0.64 protein_coding synonymous_variant LOW 258C>A Ser86Ser
M0139588 EDPBNKNA_00007 6803 4 Oral 0.36 protein_coding synonymous_variant LOW 165G>T Ser55Ser
M0139589 EDPBNKNA_00007 6824 7 Oral 0.64 protein_coding synonymous_variant LOW 144A>G Ala48Ala
M0139590 EDPBNKNA_00007 6902 4 Oral 0.36 protein_coding synonymous_variant LOW 66C>T Gly22Gly
M0139591 EDPBNKNA_00008 6991 3 Oral 0.27 protein_coding synonymous_variant LOW 303C>T Phe101Phe
M0139592 EDPBNKNA_00008 7023 6 Oral 0.55 protein_coding synonymous_variant LOW 271C>T Leu91Leu
M0139593 EDPBNKNA_00008 7081 7 Oral 0.64 protein_coding synonymous_variant LOW 213T>C Arg71Arg
M0139594 EDPBNKNA_00010 7756 8 Oral 0.73 protein_coding synonymous_variant LOW 588G>A Glu196Glu
M0139595 EDPBNKNA_00010 8217 7 Oral 0.64 protein_coding missense_variant MODERATE 127T>C Ser43Pro
M0139596 EDPBNKNA_00010 8235 8 Oral 0.73 protein_coding missense_variant MODERATE 109G>A Val37Ile
M0139597 EDPBNKNA_00011 8346 8 Oral 0.73 protein_coding synonymous_variant LOW 429T>C Pro143Pro
M0139598 EDPBNKNA_00011 8394 6 Oral 0.55 protein_coding synonymous_variant LOW 381A>G Glu127Glu
M0139599 EDPBNKNA_00011 8571 7 Oral 0.64 protein_coding synonymous_variant LOW 204T>C Ile68Ile
M0139600 EDPBNKNA_00012 8953 3 Oral 0.27 protein_coding synonymous_variant LOW 612C>T Leu204Leu
M0139601 EDPBNKNA_00012 9013 3 Oral 0.27 protein_coding synonymous_variant LOW 552G>T Arg184Arg
M0139602 EDPBNKNA_00012 9423 5 Oral 0.45 protein_coding synonymous_variant LOW 142C>T Leu48Leu
M0139603 EDPBNKNA_00012 9556 3 Oral 0.27 protein_coding synonymous_variant LOW 9T>C Ser3Ser
M0139604 EDPBNKNA_00007 9638 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2671C>T None
M0139605 EDPBNKNA_00007 9641 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2674C>T None
M0139606 EDPBNKNA_00014 11721 3 Oral 0.27 protein_coding missense_variant MODERATE 1271A>G Lys424Arg
M0139607 EDPBNKNA_00007 11742 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4775C>T None
M0139608 EDPBNKNA_00007 11931 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4964A>G None
M0139609 EDPBNKNA_00008 12075 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4782A>G None
M0139610 EDPBNKNA_00008 12076 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4783T>C None
M0139611 EDPBNKNA_00008 12102 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4809C>G None
M0139612 EDPBNKNA_00008 12115 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4822A>G None
M0139613 EDPBNKNA_00008 12126 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4833A>G None
M0139614 EDPBNKNA_00008 12138 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4845C>T None
M0139615 EDPBNKNA_00008 12177 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4884C>G None
M0139616 EDPBNKNA_00008 12186 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4893G>A None
M0139617 EDPBNKNA_00008 12198 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4905T>A None
M0139618 EDPBNKNA_00008 12219 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4926C>T None
M0139619 EDPBNKNA_00008 12234 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4941G>C None
M0139620 EDPBNKNA_00008 12288 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4995G>C None
M0139621 EDPBNKNA_00008 12289 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4996A>T None
M0139622 EDPBNKNA_00009 12324 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4725G>T None
M0139623 EDPBNKNA_00009 12336 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4737T>C None
M0139624 EDPBNKNA_00009 12339 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4740C>T None
M0139625 EDPBNKNA_00009 12369 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4770A>G None
M0139626 EDPBNKNA_00015 12411 4 Oral 0.36 protein_coding stop_lost&splice_region_variant HIGH 193T>C Ter65Argext*?
M0139627 EDPBNKNA_00015 12426 3 Oral 0.27 protein_coding missense_variant MODERATE 178A>G Ser60Gly
M0139628 EDPBNKNA_00015 12429 3 Oral 0.27 protein_coding missense_variant MODERATE 175T>G Tyr59Asp
M0139629 EDPBNKNA_00015 12438 3 Oral 0.27 protein_coding missense_variant MODERATE 166A>G Ile56Val
M0139630 EDPBNKNA_00015 12570 4 Oral 0.36 protein_coding missense_variant MODERATE 34A>G Lys12Glu
M0139631 EDPBNKNA_00015 12596 3 Oral 0.27 protein_coding missense_variant MODERATE 8T>C Leu3Pro
M0139632 EDPBNKNA_00010 12639 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4296A>G None
M0139633 EDPBNKNA_00010 12678 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4335C>G None
M0139634 EDPBNKNA_00010 12804 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4461G>A None
M0139635 EDPBNKNA_00010 12825 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4482T>G None
M0139636 EDPBNKNA_00010 12873 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4530A>G None
M0139637 EDPBNKNA_00010 12906 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4563T>C None
M0139638 EDPBNKNA_00010 12927 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4584G>T None
M0139639 EDPBNKNA_00003 2014 4 Oral 0.36 protein_coding missense_variant MODERATE 142G>T Val48Leu
M0139640 EDPBNKNA_00003 2015 4 Oral 0.36 protein_coding synonymous_variant LOW 141T>C Tyr47Tyr
M0139641 EDPBNKNA_00003 2016 4 Oral 0.36 protein_coding missense_variant MODERATE 140A>G Tyr47Cys
M0139642 EDPBNKNA_00003 2017 4 Oral 0.36 protein_coding missense_variant MODERATE 139T>C Tyr47His
M0139643 EDPBNKNA_00003 2028 4 Oral 0.36 protein_coding missense_variant MODERATE 128A>G Lys43Arg
M0139644 EDPBNKNA_00003 2071 3 Oral 0.27 protein_coding missense_variant MODERATE 85G>C Val29Leu
M0139645 EDPBNKNA_00004 2241 3 Oral 0.27 protein_coding synonymous_variant LOW 498T>C Thr166Thr
M0139646 EDPBNKNA_00004 2271 4 Oral 0.36 protein_coding synonymous_variant LOW 468A>G Arg156Arg
M0139647 EDPBNKNA_00004 2283 4 Oral 0.36 protein_coding synonymous_variant LOW 456A>G Thr152Thr
M0139648 EDPBNKNA_00004 2286 4 Oral 0.36 protein_coding synonymous_variant LOW 453A>G Val151Val
M0139649 EDPBNKNA_00004 2472 4 Oral 0.36 protein_coding synonymous_variant LOW 267C>T Ala89Ala
M0139650 EDPBNKNA_00004 2556 4 Oral 0.36 protein_coding synonymous_variant LOW 183G>C Ala61Ala
M0139651 EDPBNKNA_00004 2574 3 Oral 0.27 protein_coding synonymous_variant LOW 165T>C Gly55Gly
M0139652 EDPBNKNA_00004 2580 3 Oral 0.27 protein_coding synonymous_variant LOW 159T>C Asp53Asp
M0139653 EDPBNKNA_00005 2919 3 Oral 0.27 protein_coding synonymous_variant LOW 879T>C Ala293Ala
M0139654 EDPBNKNA_00005 3519 3 Oral 0.27 protein_coding synonymous_variant LOW 279C>T Ser93Ser
M0139655 EDPBNKNA_00005 3531 4 Oral 0.36 protein_coding synonymous_variant LOW 267A>G Gln89Gln
M0139656 EDPBNKNA_00005 3552 4 Oral 0.36 protein_coding synonymous_variant LOW 246T>C Thr82Thr
M0139657 EDPBNKNA_00005 3708 3 Oral 0.27 protein_coding synonymous_variant LOW 90C>T Gly30Gly
M0139658 EDPBNKNA_00005 3717 5 Oral 0.45 protein_coding synonymous_variant LOW 81C>T Ile27Ile
M0139659 EDPBNKNA_00005 3765 3 Oral 0.27 protein_coding synonymous_variant LOW 33T>C Arg11Arg
M0139660 EDPBNKNA_00006 3827 4 Oral 0.36 protein_coding synonymous_variant LOW 528C>T Asp176Asp
M0139661 EDPBNKNA_00006 3917 4 Oral 0.36 protein_coding synonymous_variant LOW 438G>A Ser146Ser
M0139662 EDPBNKNA_00006 3944 4 Oral 0.36 protein_coding synonymous_variant LOW 411C>G Thr137Thr
M0139663 EDPBNKNA_00006 4322 4 Oral 0.36 protein_coding synonymous_variant LOW 33T>C Val11Val
M0139664 EDPBNKNA_00006 4343 3 Oral 0.27 protein_coding synonymous_variant LOW 12A>T Ala4Ala
M0139665 EDPBNKNA_00007 5459 5 Oral 0.45 protein_coding synonymous_variant LOW 1509A>G Arg503Arg
M0139666 EDPBNKNA_00007 5681 6 Oral 0.55 protein_coding missense_variant MODERATE 1287G>T Leu429Phe
M0139667 EDPBNKNA_00007 5684 6 Oral 0.55 protein_coding synonymous_variant LOW 1284T>C Asp428Asp
M0139668 EDPBNKNA_00007 5792 5 Oral 0.45 protein_coding synonymous_variant LOW 1176G>C Ala392Ala
M0139669 EDPBNKNA_00007 6068 7 Oral 0.64 protein_coding synonymous_variant LOW 900T>C Ser300Ser
M0139670 EDPBNKNA_00007 6083 7 Oral 0.64 protein_coding synonymous_variant LOW 885C>A Ala295Ala
M0139671 EDPBNKNA_00007 6098 6 Oral 0.55 protein_coding synonymous_variant LOW 870T>C Asn290Asn
M0139672 EDPBNKNA_00007 6521 4 Oral 0.36 protein_coding synonymous_variant LOW 447C>T Ile149Ile
M0139673 EDPBNKNA_00007 6587 5 Oral 0.45 protein_coding synonymous_variant LOW 381T>C Ser127Ser
M0139674 EDPBNKNA_00007 6809 3 Oral 0.27 protein_coding missense_variant MODERATE 159G>A Met53Ile
M0139675 EDPBNKNA_00007 6848 4 Oral 0.36 protein_coding synonymous_variant LOW 120T>C Pro40Pro
M0139676 EDPBNKNA_00007 6860 3 Oral 0.27 protein_coding synonymous_variant LOW 108T>G Arg36Arg
M0139677 EDPBNKNA_00007 6913 3 Oral 0.27 protein_coding missense_variant MODERATE 55G>A Val19Ile
M0139678 EDPBNKNA_00008 6974 4 Oral 0.36 protein_coding missense_variant MODERATE 320T>C Phe107Ser
M0139679 EDPBNKNA_00008 6986 4 Oral 0.36 protein_coding missense_variant MODERATE 308G>A Arg103Gln
M0139680 EDPBNKNA_00008 7017 4 Oral 0.36 protein_coding missense_variant MODERATE 277C>A His93Asn
M0139681 EDPBNKNA_00008 7045 3 Oral 0.27 protein_coding synonymous_variant LOW 249A>C Ala83Ala
M0139682 EDPBNKNA_00008 7213 6 Oral 0.55 protein_coding synonymous_variant LOW 81C>T Phe27Phe
M0139683 EDPBNKNA_00009 7351 4 Oral 0.36 protein_coding synonymous_variant LOW 249C>T Gly83Gly
M0139684 EDPBNKNA_00009 7354 4 Oral 0.36 protein_coding synonymous_variant LOW 246C>T Phe82Phe
M0139685 EDPBNKNA_00009 7384 5 Oral 0.45 protein_coding synonymous_variant LOW 216G>A Pro72Pro
M0139686 EDPBNKNA_00009 7498 4 Oral 0.36 protein_coding synonymous_variant LOW 102G>C Thr34Thr
M0139687 EDPBNKNA_00009 7501 4 Oral 0.36 protein_coding synonymous_variant LOW 99C>G Ala33Ala
M0139688 EDPBNKNA_00009 7591 6 Oral 0.55 protein_coding synonymous_variant LOW 9T>A Thr3Thr
M0139689 EDPBNKNA_00004 7610 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -4872A>G None
M0139690 EDPBNKNA_00010 7672 5 Oral 0.45 protein_coding missense_variant MODERATE 672A>T Glu224Asp
M0139691 EDPBNKNA_00010 7674 5 Oral 0.45 protein_coding missense_variant MODERATE 670G>A Glu224Lys
M0139692 EDPBNKNA_00010 7765 4 Oral 0.36 protein_coding synonymous_variant LOW 579G>A Leu193Leu
M0139693 EDPBNKNA_00010 7933 5 Oral 0.45 protein_coding synonymous_variant LOW 411T>C Ser137Ser
M0139694 EDPBNKNA_00010 7994 4 Oral 0.36 protein_coding missense_variant MODERATE 350C>T Thr117Ile
M0139695 EDPBNKNA_00010 8109 4 Oral 0.36 protein_coding missense_variant MODERATE 235A>C Met79Leu
M0139696 EDPBNKNA_00010 8110 4 Oral 0.36 protein_coding missense_variant MODERATE 234T>G Asn78Lys
M0139697 EDPBNKNA_00010 8113 7 Oral 0.64 protein_coding synonymous_variant LOW 231A>G Ser77Ser
M0139698 EDPBNKNA_00010 8126 5 Oral 0.45 protein_coding missense_variant MODERATE 218A>T Glu73Val
M0139699 EDPBNKNA_00010 8143 4 Oral 0.36 protein_coding synonymous_variant LOW 201T>C Pro67Pro
M0139700 EDPBNKNA_00010 8145 4 Oral 0.36 protein_coding missense_variant MODERATE 199C>T Pro67Ser
M0139701 EDPBNKNA_00010 8335 7 Oral 0.64 protein_coding synonymous_variant LOW 9G>A Thr3Thr
M0139702 EDPBNKNA_00011 8367 7 Oral 0.64 protein_coding synonymous_variant LOW 408G>A Gln136Gln
M0139703 EDPBNKNA_00011 8495 7 Oral 0.64 protein_coding synonymous_variant LOW 280C>T Leu94Leu
M0139704 EDPBNKNA_00011 8496 7 Oral 0.64 protein_coding synonymous_variant LOW 279G>C Thr93Thr
M0139705 EDPBNKNA_00011 8529 5 Oral 0.45 protein_coding synonymous_variant LOW 246C>T Arg82Arg
M0139706 EDPBNKNA_00011 8553 6 Oral 0.55 protein_coding missense_variant MODERATE 222C>G Ser74Arg
M0139707 EDPBNKNA_00011 8619 6 Oral 0.55 protein_coding synonymous_variant LOW 156C>T Pro52Pro
M0139708 EDPBNKNA_00011 8667 6 Oral 0.55 protein_coding synonymous_variant LOW 108G>C Pro36Pro
M0139709 EDPBNKNA_00012 9016 4 Oral 0.36 protein_coding synonymous_variant LOW 549T>C Arg183Arg
M0139710 EDPBNKNA_00009 7369 3 Oral 0.27 protein_coding synonymous_variant LOW 231A>G Thr77Thr
M0139711 EDPBNKNA_00009 7378 3 Oral 0.27 protein_coding synonymous_variant LOW 222G>A Thr74Thr
M0139712 EDPBNKNA_00010 7780 3 Oral 0.27 protein_coding synonymous_variant LOW 564T>C Tyr188Tyr
M0139713 EDPBNKNA_00010 7786 3 Oral 0.27 protein_coding synonymous_variant LOW 558G>A Ala186Ala
M0139714 EDPBNKNA_00010 7791 3 Oral 0.27 protein_coding synonymous_variant LOW 553C>T Leu185Leu
M0139715 EDPBNKNA_00010 7798 3 Oral 0.27 protein_coding synonymous_variant LOW 546T>G Thr182Thr
M0139716 EDPBNKNA_00010 7801 3 Oral 0.27 protein_coding synonymous_variant LOW 543G>T Gly181Gly
M0139717 EDPBNKNA_00002 1465 3 Oral 0.27 protein_coding synonymous_variant LOW 357C>T Arg119Arg
M0139718 EDPBNKNA_00002 1762 3 Oral 0.27 protein_coding synonymous_variant LOW 60T>C Leu20Leu
M0139719 EDPBNKNA_00002 1765 3 Oral 0.27 protein_coding synonymous_variant LOW 57G>A Gly19Gly
M0139720 EDPBNKNA_00002 1768 3 Oral 0.27 protein_coding synonymous_variant LOW 54A>G Leu18Leu
M0139721 EDPBNKNA_00002 1783 3 Oral 0.27 protein_coding synonymous_variant LOW 39G>C Leu13Leu
M0139722 EDPBNKNA_00002 1787 3 Oral 0.27 protein_coding missense_variant MODERATE 35C>G Ala12Gly
M0139723 EDPBNKNA_00002 1801 3 Oral 0.27 protein_coding synonymous_variant LOW 21G>A Glu7Glu
M0139724 EDPBNKNA_00005 3108 3 Oral 0.27 protein_coding synonymous_variant LOW 690A>G Leu230Leu
M0139725 EDPBNKNA_00005 3648 3 Oral 0.27 protein_coding synonymous_variant LOW 150C>A Arg50Arg
M0139726 EDPBNKNA_00007 5552 3 Oral 0.27 protein_coding synonymous_variant LOW 1416T>C Val472Val
M0139727 EDPBNKNA_00007 5567 3 Oral 0.27 protein_coding synonymous_variant LOW 1401A>C Ala467Ala
M0139728 EDPBNKNA_00007 6125 3 Oral 0.27 protein_coding synonymous_variant LOW 843T>G Leu281Leu
M0139729 EDPBNKNA_00007 6131 3 Oral 0.27 protein_coding synonymous_variant LOW 837A>G Ala279Ala
M0139730 EDPBNKNA_00007 6308 4 Oral 0.36 protein_coding synonymous_variant LOW 660T>C Cys220Cys
M0139731 EDPBNKNA_00007 6328 3 Oral 0.27 protein_coding missense_variant MODERATE 640G>A Val214Ile
M0139732 EDPBNKNA_00007 9831 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2864A>T None
M0139733 EDPBNKNA_00007 6416 3 Oral 0.27 protein_coding missense_variant MODERATE 552A>T Arg184Ser
M0139734 EDPBNKNA_00007 6417 3 Oral 0.27 protein_coding missense_variant MODERATE 551G>C Arg184Thr
M0139735 EDPBNKNA_00007 6423 3 Oral 0.27 protein_coding missense_variant MODERATE 545C>A Ala182Glu
M0139736 EDPBNKNA_00012 9079 3 Oral 0.27 protein_coding synonymous_variant LOW 486A>G Leu162Leu
M0139737 EDPBNKNA_00005 3636 3 Oral 0.27 protein_coding synonymous_variant LOW 162G>A Val54Val
M0139738 EDPBNKNA_00007 4872 3 Oral 0.27 protein_coding missense_variant MODERATE 2096A>T Tyr699Phe
M0139739 EDPBNKNA_00007 5135 3 Oral 0.27 protein_coding synonymous_variant LOW 1833A>T Gly611Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term