Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3388
  Reference Plasmid   MGYG000299180__MGYG000299180_85
  Reference Plasmid Size   92536
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0139849 OCNFHIID_00069 79334 3 Oral 0.27 protein_coding synonymous_variant LOW 321C>T Tyr107Tyr
M0139850 OCNFHIID_00069 79337 3 Oral 0.27 protein_coding synonymous_variant LOW 324C>T Val108Val
M0139851 OCNFHIID_00069 79364 3 Oral 0.27 protein_coding synonymous_variant LOW 351A>T Ile117Ile
M0139852 OCNFHIID_00069 79373 3 Oral 0.27 protein_coding synonymous_variant LOW 360T>C Tyr120Tyr
M0139853 OCNFHIID_00069 79379 3 Oral 0.27 protein_coding synonymous_variant LOW 366A>G Pro122Pro
M0139854 OCNFHIID_00069 79382 3 Oral 0.27 protein_coding synonymous_variant LOW 369T>C Asn123Asn
M0139855 OCNFHIID_00069 79465 3 Oral 0.27 protein_coding missense_variant MODERATE 452T>A Ile151Asn
M0139856 OCNFHIID_00069 79484 3 Oral 0.27 protein_coding synonymous_variant LOW 471A>G Leu157Leu
M0139857 OCNFHIID_00070 79625 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4C>T None
M0139858 OCNFHIID_00070 79626 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3T>G None
M0139859 OCNFHIID_00070 79636 3 Oral 0.27 protein_coding missense_variant MODERATE 8A>G Lys3Arg
M0139860 OCNFHIID_00070 79643 3 Oral 0.27 protein_coding synonymous_variant LOW 15C>T Asn5Asn
M0139861 OCNFHIID_00070 79701 3 Oral 0.27 protein_coding missense_variant MODERATE 73G>A Ala25Thr
M0139862 OCNFHIID_00070 79702 3 Oral 0.27 protein_coding missense_variant MODERATE 74C>A Ala25Glu
M0139863 OCNFHIID_00070 79703 3 Oral 0.27 protein_coding synonymous_variant LOW 75A>G Ala25Ala
M0139864 OCNFHIID_00070 79832 3 Oral 0.27 protein_coding synonymous_variant LOW 204A>T Thr68Thr
M0139865 OCNFHIID_00070 80155 3 Oral 0.27 protein_coding missense_variant MODERATE 527C>A Ala176Asp
M0139866 OCNFHIID_00022 24846 3 Oral 0.27 protein_coding missense_variant MODERATE 775A>G Thr259Ala
M0139867 OCNFHIID_00023 25873 3 Oral 0.27 protein_coding synonymous_variant LOW 42T>A Ala14Ala
M0139868 OCNFHIID_00023 25936 3 Oral 0.27 protein_coding synonymous_variant LOW 105G>A Gln35Gln
M0139869 OCNFHIID_00023 25942 3 Oral 0.27 protein_coding missense_variant MODERATE 111G>T Glu37Asp
M0139870 OCNFHIID_00023 25945 3 Oral 0.27 protein_coding synonymous_variant LOW 114G>A Lys38Lys
M0139871 OCNFHIID_00023 25946 3 Oral 0.27 protein_coding missense_variant MODERATE 115A>C Thr39Pro
M0139872 OCNFHIID_00023 25951 3 Oral 0.27 protein_coding synonymous_variant LOW 120C>T Tyr40Tyr
M0139873 OCNFHIID_00023 25958 3 Oral 0.27 protein_coding missense_variant MODERATE 127G>A Val43Ile
M0139874 OCNFHIID_00023 25969 3 Oral 0.27 protein_coding synonymous_variant LOW 138T>C Gly46Gly
M0139875 OCNFHIID_00023 26002 3 Oral 0.27 protein_coding synonymous_variant LOW 171C>T Ser57Ser
M0139876 OCNFHIID_00023 26125 3 Oral 0.27 protein_coding synonymous_variant LOW 294G>A Glu98Glu
M0139877 OCNFHIID_00023 26143 3 Oral 0.27 protein_coding synonymous_variant LOW 312T>C Thr104Thr
M0139878 OCNFHIID_00023 26164 3 Oral 0.27 protein_coding missense_variant MODERATE 333C>A Ser111Arg
M0139879 OCNFHIID_00023 26166 3 Oral 0.27 protein_coding missense_variant MODERATE 335G>A Arg112Gln
M0139880 OCNFHIID_00023 26170 3 Oral 0.27 protein_coding missense_variant MODERATE 339T>A His113Gln
M0139881 OCNFHIID_00023 26176 3 Oral 0.27 protein_coding synonymous_variant LOW 345T>C Thr115Thr
M0139882 OCNFHIID_00023 26179 3 Oral 0.27 protein_coding synonymous_variant LOW 348C>T Val116Val
M0139883 OCNFHIID_00023 26192 3 Oral 0.27 protein_coding missense_variant MODERATE 361T>C Ser121Pro
M0139884 OCNFHIID_00023 26204 3 Oral 0.27 protein_coding synonymous_variant LOW 373T>C Leu125Leu
M0139885 OCNFHIID_00023 26209 3 Oral 0.27 protein_coding synonymous_variant LOW 378G>A Glu126Glu
M0139886 OCNFHIID_00023 26214 3 Oral 0.27 protein_coding missense_variant MODERATE 383G>A Arg128His
M0139887 OCNFHIID_00023 26233 3 Oral 0.27 protein_coding synonymous_variant LOW 402C>A Val134Val
M0139888 OCNFHIID_00023 26243 3 Oral 0.27 protein_coding missense_variant MODERATE 412A>G Ser138Gly
M0139889 OCNFHIID_00023 26245 3 Oral 0.27 protein_coding missense_variant MODERATE 414C>A Ser138Arg
M0139890 OCNFHIID_00020 26638 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4345T>C None
M0139891 OCNFHIID_00024 27019 4 Oral 0.36 protein_coding missense_variant MODERATE 1000G>A Val334Ile
M0139892 OCNFHIID_00024 27020 4 Oral 0.36 protein_coding synonymous_variant LOW 999G>A Glu333Glu
M0139893 OCNFHIID_00024 27028 4 Oral 0.36 protein_coding missense_variant MODERATE 991G>C Glu331Gln
M0139894 OCNFHIID_00024 27029 4 Oral 0.36 protein_coding synonymous_variant LOW 990C>T His330His
M0139895 OCNFHIID_00024 27033 4 Oral 0.36 protein_coding missense_variant MODERATE 986G>A Arg329Gln
M0139896 OCNFHIID_00024 27035 4 Oral 0.36 protein_coding synonymous_variant LOW 984A>G Glu328Glu
M0139897 OCNFHIID_00024 27051 4 Oral 0.36 protein_coding missense_variant MODERATE 968A>G Gln323Arg
M0139898 OCNFHIID_00024 27060 4 Oral 0.36 protein_coding missense_variant MODERATE 959C>T Thr320Ile
M0139899 OCNFHIID_00024 27061 4 Oral 0.36 protein_coding missense_variant MODERATE 958A>G Thr320Ala
M0139900 OCNFHIID_00024 27066 4 Oral 0.36 protein_coding missense_variant MODERATE 953T>G Ile318Ser
M0139901 OCNFHIID_00024 27068 4 Oral 0.36 protein_coding missense_variant MODERATE 951C>A Asp317Glu
M0139902 OCNFHIID_00024 27077 4 Oral 0.36 protein_coding synonymous_variant LOW 942G>A Lys314Lys
M0139903 OCNFHIID_00024 27086 4 Oral 0.36 protein_coding synonymous_variant LOW 933C>T Asp311Asp
M0139904 OCNFHIID_00024 27102 4 Oral 0.36 protein_coding missense_variant MODERATE 917A>G Glu306Gly
M0139905 OCNFHIID_00025 28307 4 Oral 0.36 protein_coding missense_variant MODERATE 346T>A Trp116Arg
M0139906 OCNFHIID_00025 28324 4 Oral 0.36 protein_coding missense_variant MODERATE 329C>T Thr110Ile
M0139907 OCNFHIID_00025 28327 4 Oral 0.36 protein_coding missense_variant MODERATE 326A>T Asn109Ile
M0139908 OCNFHIID_00025 28328 4 Oral 0.36 protein_coding missense_variant MODERATE 325A>G Asn109Asp
M0139909 OCNFHIID_00025 28344 4 Oral 0.36 protein_coding synonymous_variant LOW 309G>A Lys103Lys
M0139910 OCNFHIID_00025 28506 3 Oral 0.27 protein_coding synonymous_variant LOW 147G>T Ala49Ala
M0139911 OCNFHIID_00026 29718 3 Oral 0.27 protein_coding missense_variant MODERATE 197T>C Ile66Thr
M0139912 OCNFHIID_00028 31068 3 Oral 0.27 protein_coding missense_variant MODERATE 104C>T Pro35Leu
M0139913 OCNFHIID_00028 31364 3 Oral 0.27 protein_coding missense_variant MODERATE 400T>C Cys134Arg
M0139914 OCNFHIID_00002 2870 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1241G>A None
M0139915 OCNFHIID_00002 2938 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1309A>T None
M0139916 OCNFHIID_00002 3157 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1528T>C None
M0139917 OCNFHIID_00002 3159 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1530A>C None
M0139918 OCNFHIID_00002 3173 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1544C>T None
M0139919 OCNFHIID_00002 3177 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1548A>G None
M0139920 OCNFHIID_00002 3181 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1552T>A None
M0139921 OCNFHIID_00002 3188 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1559C>T None
M0139922 OCNFHIID_00002 3232 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1603A>T None
M0139923 OCNFHIID_00002 3305 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1676T>C None
M0139924 OCNFHIID_00005 3438 3 Oral 0.27 protein_coding missense_variant MODERATE 596C>T Ala199Val
M0139925 OCNFHIID_00005 3580 3 Oral 0.27 protein_coding missense_variant MODERATE 454T>G Leu152Val
M0139926 OCNFHIID_00005 3615 3 Oral 0.27 protein_coding missense_variant MODERATE 419T>C Val140Ala
M0139927 OCNFHIID_00005 3800 3 Oral 0.27 protein_coding synonymous_variant LOW 234T>C Thr78Thr
M0139928 OCNFHIID_00002 4220 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2591T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term