Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3389
  Reference Plasmid   MGYG000299185__MGYG000299185_151
  Reference Plasmid Size   3198
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0139929 FOOKKMFN_00001 108 3 Oral 0.75 protein_coding synonymous_variant LOW 2484T>C Asp828Asp
M0139930 FOOKKMFN_00001 123 3 Oral 0.75 protein_coding synonymous_variant LOW 2469C>T Val823Val
M0139931 FOOKKMFN_00001 125 3 Oral 0.75 protein_coding missense_variant MODERATE 2467G>A Val823Ile
M0139932 FOOKKMFN_00001 141 3 Oral 0.75 protein_coding synonymous_variant LOW 2451T>C Leu817Leu
M0139933 FOOKKMFN_00001 183 3 Oral 0.75 protein_coding synonymous_variant LOW 2409T>A Gly803Gly
M0139934 FOOKKMFN_00001 228 3 Oral 0.75 protein_coding synonymous_variant LOW 2364T>C Asp788Asp
M0139935 FOOKKMFN_00001 564 3 Oral 0.75 protein_coding synonymous_variant LOW 2028A>T Ala676Ala
M0139936 FOOKKMFN_00001 582 3 Oral 0.75 protein_coding synonymous_variant LOW 2010G>A Glu670Glu
M0139937 FOOKKMFN_00001 753 3 Oral 0.75 protein_coding synonymous_variant LOW 1839A>G Leu613Leu
M0139938 FOOKKMFN_00001 780 3 Oral 0.75 protein_coding synonymous_variant LOW 1812A>T Ile604Ile
M0139939 FOOKKMFN_00001 810 3 Oral 0.75 protein_coding synonymous_variant LOW 1782G>A Glu594Glu
M0139940 FOOKKMFN_00001 1002 3 Oral 0.75 protein_coding synonymous_variant LOW 1590G>C Gly530Gly
M0139941 FOOKKMFN_00001 1029 3 Oral 0.75 protein_coding synonymous_variant LOW 1563T>C Val521Val
M0139942 FOOKKMFN_00001 1032 3 Oral 0.75 protein_coding synonymous_variant LOW 1560T>C Ser520Ser
M0139943 FOOKKMFN_00001 1038 3 Oral 0.75 protein_coding synonymous_variant LOW 1554A>T Pro518Pro
M0139944 FOOKKMFN_00001 1047 3 Oral 0.75 protein_coding synonymous_variant LOW 1545T>A Thr515Thr
M0139945 FOOKKMFN_00001 1053 3 Oral 0.75 protein_coding synonymous_variant LOW 1539T>C Arg513Arg
M0139946 FOOKKMFN_00001 1071 3 Oral 0.75 protein_coding synonymous_variant LOW 1521C>T Phe507Phe
M0139947 FOOKKMFN_00001 1098 3 Oral 0.75 protein_coding synonymous_variant LOW 1494A>G Leu498Leu
M0139948 FOOKKMFN_00001 1104 3 Oral 0.75 protein_coding synonymous_variant LOW 1488T>C Phe496Phe
M0139949 FOOKKMFN_00001 1107 3 Oral 0.75 protein_coding synonymous_variant LOW 1485T>C Leu495Leu
M0139950 FOOKKMFN_00001 1658 3 Oral 0.75 protein_coding missense_variant MODERATE 934T>C Tyr312His
M0139951 FOOKKMFN_00001 1711 4 Oral 1.00 protein_coding missense_variant MODERATE 881A>G Asn294Ser
M0139952 FOOKKMFN_00001 1827 3 Oral 0.75 protein_coding synonymous_variant LOW 765A>G Glu255Glu
M0139953 FOOKKMFN_00001 1992 4 Oral 1.00 protein_coding synonymous_variant LOW 600A>T Thr200Thr
M0139954 FOOKKMFN_00001 2108 4 Oral 1.00 protein_coding missense_variant MODERATE 484T>C Ser162Pro
M0139955 FOOKKMFN_00001 2169 4 Oral 1.00 protein_coding synonymous_variant LOW 423C>T His141His
M0139956 FOOKKMFN_00001 2224 4 Oral 1.00 protein_coding missense_variant MODERATE 368G>C Ser123Thr
M0139957 FOOKKMFN_00001 2250 3 Oral 0.75 protein_coding synonymous_variant LOW 342T>C Ser114Ser
M0139958 FOOKKMFN_00001 2271 4 Oral 1.00 protein_coding synonymous_variant LOW 321T>C Ala107Ala
M0139959 FOOKKMFN_00001 2316 4 Oral 1.00 protein_coding synonymous_variant LOW 276A>C Leu92Leu
M0139960 FOOKKMFN_00001 2325 3 Oral 0.75 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0139961 FOOKKMFN_00001 2400 3 Oral 0.75 protein_coding synonymous_variant LOW 192A>G Glu64Glu
M0139962 FOOKKMFN_00001 1560 3 Oral 0.75 protein_coding missense_variant MODERATE 1032A>C Glu344Asp
M0139963 FOOKKMFN_00001 1635 3 Oral 0.75 protein_coding synonymous_variant LOW 957A>G Val319Val
M0139964 FOOKKMFN_00001 1653 3 Oral 0.75 protein_coding synonymous_variant LOW 939T>C Val313Val
M0139965 FOOKKMFN_00001 1676 3 Oral 0.75 protein_coding missense_variant MODERATE 916A>G Ile306Val
M0139966 FOOKKMFN_00001 1704 3 Oral 0.75 protein_coding synonymous_variant LOW 888A>G Leu296Leu
M0139967 FOOKKMFN_00001 1713 3 Oral 0.75 protein_coding synonymous_variant LOW 879A>G Lys293Lys
M0139968 FOOKKMFN_00001 1833 3 Oral 0.75 protein_coding synonymous_variant LOW 759T>C Asn253Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term