Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3392
  Reference Plasmid   MGYG000299223__MGYG000299223_332
  Reference Plasmid Size   29794
  Reference Plasmid GC Content   0.52
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0140065 CCMLAPFB_00013 19783 3 Oral 0.30 protein_coding synonymous_variant LOW 87A>G Thr29Thr
M0140066 CCMLAPFB_00014 19938 3 Oral 0.30 protein_coding synonymous_variant LOW 1006C>T Leu336Leu
M0140067 CCMLAPFB_00014 20062 3 Oral 0.30 protein_coding synonymous_variant LOW 882A>G Glu294Glu
M0140068 CCMLAPFB_00014 20173 3 Oral 0.30 protein_coding synonymous_variant LOW 771C>G Thr257Thr
M0140069 CCMLAPFB_00014 20194 3 Oral 0.30 protein_coding synonymous_variant LOW 750T>C Tyr250Tyr
M0140070 CCMLAPFB_00014 20353 3 Oral 0.30 protein_coding synonymous_variant LOW 591A>G Leu197Leu
M0140071 CCMLAPFB_00014 20389 3 Oral 0.30 protein_coding synonymous_variant LOW 555T>C Ala185Ala
M0140072 CCMLAPFB_00014 20398 3 Oral 0.30 protein_coding synonymous_variant LOW 546G>T Arg182Arg
M0140073 CCMLAPFB_00014 20425 3 Oral 0.30 protein_coding synonymous_variant LOW 519T>C Ser173Ser
M0140074 CCMLAPFB_00014 20674 3 Oral 0.30 protein_coding synonymous_variant LOW 270T>C Asn90Asn
M0140075 CCMLAPFB_00014 20716 3 Oral 0.30 protein_coding synonymous_variant LOW 228G>A Ala76Ala
M0140076 CCMLAPFB_00014 20803 3 Oral 0.30 protein_coding synonymous_variant LOW 141G>A Thr47Thr
M0140077 CCMLAPFB_00014 20830 3 Oral 0.30 protein_coding synonymous_variant LOW 114T>C Ser38Ser
M0140078 CCMLAPFB_00014 20845 3 Oral 0.30 protein_coding synonymous_variant LOW 99T>C Asp33Asp
M0140079 CCMLAPFB_00014 20855 3 Oral 0.30 protein_coding missense_variant MODERATE 89A>G Lys30Arg
M0140080 CCMLAPFB_00014 20860 3 Oral 0.30 protein_coding synonymous_variant LOW 84A>C Val28Val
M0140081 CCMLAPFB_00014 20863 3 Oral 0.30 protein_coding synonymous_variant LOW 81C>T Ser27Ser
M0140082 CCMLAPFB_00014 20887 3 Oral 0.30 protein_coding synonymous_variant LOW 57A>C Pro19Pro
M0140083 CCMLAPFB_00014 20899 3 Oral 0.30 protein_coding synonymous_variant LOW 45G>A Glu15Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term