Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3394
  Reference Plasmid   MGYG000299230__MGYG000299230_254
  Reference Plasmid Size   4173
  Reference Plasmid GC Content   0.47
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0140089 BBOBBJFH_00005 2329 4 Oral 0.80 protein_coding synonymous_variant LOW 267C>T Asn89Asn
M0140090 BBOBBJFH_00005 2365 4 Oral 0.80 protein_coding synonymous_variant LOW 303T>C Ile101Ile
M0140091 BBOBBJFH_00005 2377 4 Oral 0.80 protein_coding synonymous_variant LOW 315G>A Thr105Thr
M0140092 BBOBBJFH_00005 2383 4 Oral 0.80 protein_coding synonymous_variant LOW 321C>T Gly107Gly
M0140093 BBOBBJFH_00005 2701 3 Oral 0.60 protein_coding synonymous_variant LOW 639A>G Val213Val
M0140094 BBOBBJFH_00005 2757 5 Oral 1.00 protein_coding missense_variant MODERATE 695T>C Val232Ala
M0140095 BBOBBJFH_00005 3031 3 Oral 0.60 protein_coding synonymous_variant LOW 969A>C Gly323Gly
M0140096 BBOBBJFH_00005 3094 3 Oral 0.60 protein_coding synonymous_variant LOW 1032C>T Phe344Phe
M0140097 BBOBBJFH_00005 3263 3 Oral 0.60 protein_coding missense_variant MODERATE 1201A>G Asn401Asp
M0140098 BBOBBJFH_00005 3304 3 Oral 0.60 protein_coding synonymous_variant LOW 1242C>T Asn414Asn
M0140099 BBOBBJFH_00005 3466 5 Oral 1.00 protein_coding synonymous_variant LOW 1404T>A Pro468Pro
M0140100 BBOBBJFH_00005 3472 5 Oral 1.00 protein_coding synonymous_variant LOW 1410T>A Ala470Ala
M0140101 BBOBBJFH_00005 3544 5 Oral 1.00 protein_coding synonymous_variant LOW 1482T>C Phe494Phe
M0140102 BBOBBJFH_00005 3628 5 Oral 1.00 protein_coding synonymous_variant LOW 1566A>G Gly522Gly
M0140103 BBOBBJFH_00005 2440 4 Oral 0.80 protein_coding synonymous_variant LOW 378C>T Tyr126Tyr
M0140104 BBOBBJFH_00005 2449 4 Oral 0.80 protein_coding synonymous_variant LOW 387G>A Leu129Leu
M0140105 BBOBBJFH_00005 3025 3 Oral 0.60 protein_coding synonymous_variant LOW 963T>C Gly321Gly
M0140106 BBOBBJFH_00005 3259 3 Oral 0.60 protein_coding synonymous_variant LOW 1197C>T Cys399Cys
M0140107 BBOBBJFH_00005 3586 4 Oral 0.80 protein_coding synonymous_variant LOW 1524T>C Thr508Thr
M0140108 BBOBBJFH_00005 3673 4 Oral 0.80 protein_coding synonymous_variant LOW 1611G>A Lys537Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term