Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3397
  Reference Plasmid   MGYG000299275__MGYG000299275_13
  Reference Plasmid Size   83487
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0140240 HOHDCILL_00037 39373 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4433A>G None
M0140241 HOHDCILL_00037 39418 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4478A>G None
M0140242 HOHDCILL_00041 39476 3 Oral 0.38 protein_coding missense_variant MODERATE 1205A>G Tyr402Cys
M0140243 HOHDCILL_00041 39481 3 Oral 0.38 protein_coding synonymous_variant LOW 1200G>A Gly400Gly
M0140244 HOHDCILL_00041 39544 3 Oral 0.38 protein_coding synonymous_variant LOW 1137T>C Asp379Asp
M0140245 HOHDCILL_00041 39595 3 Oral 0.38 protein_coding synonymous_variant LOW 1086G>A Thr362Thr
M0140246 HOHDCILL_00041 39702 3 Oral 0.38 protein_coding missense_variant MODERATE 979T>A Phe327Ile
M0140247 HOHDCILL_00041 39716 3 Oral 0.38 protein_coding missense_variant MODERATE 965T>C Ile322Thr
M0140248 HOHDCILL_00041 39894 3 Oral 0.38 protein_coding missense_variant MODERATE 787G>A Ala263Thr
M0140249 HOHDCILL_00041 39985 3 Oral 0.38 protein_coding synonymous_variant LOW 696G>C Gly232Gly
M0140250 HOHDCILL_00041 40054 3 Oral 0.38 protein_coding missense_variant MODERATE 627T>A Asp209Glu
M0140251 HOHDCILL_00041 40543 3 Oral 0.38 protein_coding synonymous_variant LOW 138T>A Gly46Gly
M0140252 HOHDCILL_00041 40621 3 Oral 0.38 protein_coding synonymous_variant LOW 60T>C Arg20Arg
M0140253 HOHDCILL_00042 40804 3 Oral 0.38 protein_coding synonymous_variant LOW 477G>A Val159Val
M0140254 HOHDCILL_00041 41330 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -650C>T None
M0140255 HOHDCILL_00041 41349 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -669A>T None
M0140256 HOHDCILL_00041 41353 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -673G>T None
M0140257 HOHDCILL_00041 41356 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -676C>T None
M0140258 HOHDCILL_00041 41367 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -687T>A None
M0140259 HOHDCILL_00041 42099 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1419G>A None
M0140260 HOHDCILL_00043 42127 3 Oral 0.38 protein_coding synonymous_variant LOW 717G>A Thr239Thr
M0140261 HOHDCILL_00043 42142 3 Oral 0.38 protein_coding synonymous_variant LOW 702A>G Ala234Ala
M0140262 HOHDCILL_00043 42160 3 Oral 0.38 protein_coding synonymous_variant LOW 684G>A Glu228Glu
M0140263 HOHDCILL_00043 42190 3 Oral 0.38 protein_coding synonymous_variant LOW 654T>C Tyr218Tyr
M0140264 HOHDCILL_00043 42319 3 Oral 0.38 protein_coding synonymous_variant LOW 525C>T Ile175Ile
M0140265 HOHDCILL_00043 42563 3 Oral 0.38 protein_coding missense_variant MODERATE 281A>C Asp94Ala
M0140266 HOHDCILL_00043 42706 3 Oral 0.38 protein_coding synonymous_variant LOW 138A>T Gly46Gly
M0140267 HOHDCILL_00044 42965 3 Oral 0.38 protein_coding synonymous_variant LOW 2172T>C Tyr724Tyr
M0140268 HOHDCILL_00044 43124 3 Oral 0.38 protein_coding synonymous_variant LOW 2013A>G Glu671Glu
M0140269 HOHDCILL_00044 43274 3 Oral 0.38 protein_coding synonymous_variant LOW 1863C>T Leu621Leu
M0140270 HOHDCILL_00044 43478 3 Oral 0.38 protein_coding synonymous_variant LOW 1659T>C Gly553Gly
M0140271 HOHDCILL_00044 43505 3 Oral 0.38 protein_coding synonymous_variant LOW 1632C>G Gly544Gly
M0140272 HOHDCILL_00044 43814 3 Oral 0.38 protein_coding synonymous_variant LOW 1323C>T Gly441Gly
M0140273 HOHDCILL_00044 44141 3 Oral 0.38 protein_coding synonymous_variant LOW 996T>G Ala332Ala
M0140274 HOHDCILL_00044 44162 3 Oral 0.38 protein_coding synonymous_variant LOW 975A>T Val325Val
M0140275 HOHDCILL_00044 44165 3 Oral 0.38 protein_coding synonymous_variant LOW 972A>T Pro324Pro
M0140276 HOHDCILL_00044 44231 3 Oral 0.38 protein_coding synonymous_variant LOW 906T>A Val302Val
M0140277 HOHDCILL_00044 44456 3 Oral 0.38 protein_coding synonymous_variant LOW 681A>G Lys227Lys
M0140278 HOHDCILL_00044 44651 3 Oral 0.38 protein_coding synonymous_variant LOW 486T>C Leu162Leu
M0140279 HOHDCILL_00044 44654 3 Oral 0.38 protein_coding synonymous_variant LOW 483T>C Ile161Ile
M0140280 HOHDCILL_00044 44732 3 Oral 0.38 protein_coding synonymous_variant LOW 405G>A Thr135Thr
M0140281 HOHDCILL_00044 44756 3 Oral 0.38 protein_coding synonymous_variant LOW 381T>A Ser127Ser
M0140282 HOHDCILL_00044 44873 3 Oral 0.38 protein_coding synonymous_variant LOW 264A>G Lys88Lys
M0140283 HOHDCILL_00044 44876 3 Oral 0.38 protein_coding synonymous_variant LOW 261T>A Thr87Thr
M0140284 HOHDCILL_00044 44954 3 Oral 0.38 protein_coding synonymous_variant LOW 183A>G Lys61Lys
M0140285 HOHDCILL_00044 44996 3 Oral 0.38 protein_coding synonymous_variant LOW 141G>T Leu47Leu
M0140286 HOHDCILL_00044 45008 3 Oral 0.38 protein_coding synonymous_variant LOW 129T>A Ala43Ala
M0140287 HOHDCILL_00044 45039 3 Oral 0.38 protein_coding missense_variant MODERATE 98C>A Ala33Asp
M0140288 HOHDCILL_00041 45277 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4597C>T None
M0140289 HOHDCILL_00041 45348 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4668T>C None
M0140290 HOHDCILL_00045 45670 3 Oral 0.38 protein_coding synonymous_variant LOW 1092T>C Asp364Asp
M0140291 HOHDCILL_00045 45796 3 Oral 0.38 protein_coding synonymous_variant LOW 966T>A Ala322Ala
M0140292 HOHDCILL_00045 45808 3 Oral 0.38 protein_coding missense_variant MODERATE 954A>C Arg318Ser
M0140293 HOHDCILL_00045 45842 3 Oral 0.38 protein_coding missense_variant MODERATE 920C>T Ala307Val
M0140294 HOHDCILL_00045 45850 3 Oral 0.38 protein_coding synonymous_variant LOW 912A>G Ala304Ala
M0140295 HOHDCILL_00045 45859 3 Oral 0.38 protein_coding synonymous_variant LOW 903T>C Val301Val
M0140296 HOHDCILL_00045 46014 3 Oral 0.38 protein_coding missense_variant MODERATE 748G>A Ala250Thr
M0140297 HOHDCILL_00045 46048 3 Oral 0.38 protein_coding synonymous_variant LOW 714T>C Tyr238Tyr
M0140298 HOHDCILL_00045 46057 3 Oral 0.38 protein_coding synonymous_variant LOW 705C>T Arg235Arg
M0140299 HOHDCILL_00045 46084 3 Oral 0.38 protein_coding synonymous_variant LOW 678G>A Arg226Arg
M0140300 HOHDCILL_00045 46092 3 Oral 0.38 protein_coding missense_variant MODERATE 670A>G Ile224Val
M0140301 HOHDCILL_00045 46132 3 Oral 0.38 protein_coding synonymous_variant LOW 630T>G Leu210Leu
M0140302 HOHDCILL_00045 46137 3 Oral 0.38 protein_coding missense_variant MODERATE 625T>C Cys209Arg
M0140303 HOHDCILL_00045 46144 3 Oral 0.38 protein_coding synonymous_variant LOW 618G>A Glu206Glu
M0140304 HOHDCILL_00045 46192 3 Oral 0.38 protein_coding synonymous_variant LOW 570T>C Gly190Gly
M0140305 HOHDCILL_00045 46229 3 Oral 0.38 protein_coding missense_variant MODERATE 533G>A Arg178His
M0140306 HOHDCILL_00045 46261 3 Oral 0.38 protein_coding synonymous_variant LOW 501T>C Asp167Asp
M0140307 HOHDCILL_00045 46325 3 Oral 0.38 protein_coding missense_variant MODERATE 437A>C Lys146Thr
M0140308 HOHDCILL_00045 46382 3 Oral 0.38 protein_coding missense_variant MODERATE 380T>A Leu127Gln
M0140309 HOHDCILL_00045 46483 3 Oral 0.38 protein_coding synonymous_variant LOW 279A>G Glu93Glu
M0140310 HOHDCILL_00045 46558 3 Oral 0.38 protein_coding synonymous_variant LOW 204T>A Ser68Ser
M0140311 HOHDCILL_00045 46573 3 Oral 0.38 protein_coding synonymous_variant LOW 189T>G Ala63Ala
M0140312 HOHDCILL_00045 46589 3 Oral 0.38 protein_coding missense_variant MODERATE 173G>A Arg58Gln
M0140313 HOHDCILL_00045 46590 3 Oral 0.38 protein_coding synonymous_variant LOW 172C>A Arg58Arg
M0140314 HOHDCILL_00045 46621 3 Oral 0.38 protein_coding synonymous_variant LOW 141G>A Arg47Arg
M0140315 HOHDCILL_00045 46630 3 Oral 0.38 protein_coding synonymous_variant LOW 132A>G Ala44Ala
M0140316 HOHDCILL_00045 46655 3 Oral 0.38 protein_coding missense_variant MODERATE 107A>G His36Arg
M0140317 HOHDCILL_00045 46672 3 Oral 0.38 protein_coding synonymous_variant LOW 90A>G Pro30Pro
M0140318 HOHDCILL_00045 46675 3 Oral 0.38 protein_coding synonymous_variant LOW 87C>T Leu29Leu
M0140319 HOHDCILL_00045 46678 3 Oral 0.38 protein_coding synonymous_variant LOW 84T>G Ala28Ala
M0140320 HOHDCILL_00045 46707 3 Oral 0.38 protein_coding missense_variant MODERATE 55A>G Thr19Ala
M0140321 HOHDCILL_00043 46765 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3922A>G None
M0140322 HOHDCILL_00043 47392 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4549A>T None
M0140323 HOHDCILL_00043 47431 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4588G>T None
M0140324 HOHDCILL_00043 47451 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4608T>C None
M0140325 HOHDCILL_00043 47512 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4669T>G None
M0140326 HOHDCILL_00043 47649 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4806G>A None
M0140327 HOHDCILL_00043 47710 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4867T>G None
M0140328 HOHDCILL_00043 47722 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4879C>T None
M0140329 HOHDCILL_00046 47988 3 Oral 0.38 protein_coding missense_variant MODERATE 207A>T Glu69Asp
M0140330 HOHDCILL_00046 48030 4 Oral 0.50 protein_coding synonymous_variant LOW 249A>T Pro83Pro
M0140331 HOHDCILL_00046 48036 4 Oral 0.50 protein_coding synonymous_variant LOW 255T>C Phe85Phe
M0140332 HOHDCILL_00046 48045 4 Oral 0.50 protein_coding synonymous_variant LOW 264G>A Ala88Ala
M0140333 HOHDCILL_00046 48078 4 Oral 0.50 protein_coding synonymous_variant LOW 297G>A Ala99Ala
M0140334 HOHDCILL_00046 48084 4 Oral 0.50 protein_coding synonymous_variant LOW 303A>T Ala101Ala
M0140335 HOHDCILL_00046 48087 3 Oral 0.38 protein_coding synonymous_variant LOW 306T>A Ala102Ala
M0140336 HOHDCILL_00046 48093 4 Oral 0.50 protein_coding synonymous_variant LOW 312G>A Glu104Glu
M0140337 HOHDCILL_00046 48156 4 Oral 0.50 protein_coding synonymous_variant LOW 375C>T Asn125Asn
M0140338 HOHDCILL_00046 48198 4 Oral 0.50 protein_coding synonymous_variant LOW 417T>C Ala139Ala
M0140339 HOHDCILL_00046 48474 4 Oral 0.50 protein_coding synonymous_variant LOW 693C>T Asp231Asp
M0140340 HOHDCILL_00046 48507 4 Oral 0.50 protein_coding synonymous_variant LOW 726A>G Thr242Thr
M0140341 HOHDCILL_00046 48630 4 Oral 0.50 protein_coding synonymous_variant LOW 849A>G Glu283Glu
M0140342 HOHDCILL_00046 48660 3 Oral 0.38 protein_coding synonymous_variant LOW 879A>T Val293Val
M0140343 HOHDCILL_00046 48669 3 Oral 0.38 protein_coding synonymous_variant LOW 888C>T Asn296Asn
M0140344 HOHDCILL_00046 48697 4 Oral 0.50 protein_coding missense_variant MODERATE 916G>A Val306Ile
M0140345 HOHDCILL_00046 48738 4 Oral 0.50 protein_coding synonymous_variant LOW 957C>G Gly319Gly
M0140346 HOHDCILL_00046 48795 3 Oral 0.38 protein_coding synonymous_variant LOW 1014C>T Asp338Asp
M0140347 HOHDCILL_00047 48887 4 Oral 0.50 protein_coding synonymous_variant LOW 24G>A Arg8Arg
M0140348 HOHDCILL_00047 48908 3 Oral 0.38 protein_coding synonymous_variant LOW 45A>G Val15Val
M0140349 HOHDCILL_00047 48920 3 Oral 0.38 protein_coding synonymous_variant LOW 57T>A Ile19Ile
M0140350 HOHDCILL_00047 48968 4 Oral 0.50 protein_coding synonymous_variant LOW 105C>T Phe35Phe
M0140351 HOHDCILL_00047 49196 4 Oral 0.50 protein_coding synonymous_variant LOW 333A>G Val111Val
M0140352 HOHDCILL_00047 49232 3 Oral 0.38 protein_coding synonymous_variant LOW 369T>C Ile123Ile
M0140353 HOHDCILL_00047 49436 3 Oral 0.38 protein_coding synonymous_variant LOW 573A>T Pro191Pro
M0140354 HOHDCILL_00047 49517 3 Oral 0.38 protein_coding synonymous_variant LOW 654A>T Gly218Gly
M0140355 HOHDCILL_00047 49547 3 Oral 0.38 protein_coding synonymous_variant LOW 684A>G Pro228Pro
M0140356 HOHDCILL_00047 49550 4 Oral 0.50 protein_coding synonymous_variant LOW 687G>A Gln229Gln
M0140357 HOHDCILL_00047 49650 3 Oral 0.38 protein_coding synonymous_variant LOW 787T>C Leu263Leu
M0140358 HOHDCILL_00047 49718 4 Oral 0.50 protein_coding synonymous_variant LOW 855T>C Arg285Arg
M0140359 HOHDCILL_00047 49733 3 Oral 0.38 protein_coding synonymous_variant LOW 870A>G Val290Val
M0140360 HOHDCILL_00047 49910 3 Oral 0.38 protein_coding synonymous_variant LOW 1047T>C Phe349Phe
M0140361 HOHDCILL_00047 49982 4 Oral 0.50 protein_coding synonymous_variant LOW 1119A>G Val373Val
M0140362 HOHDCILL_00047 50021 4 Oral 0.50 protein_coding synonymous_variant LOW 1158G>A Leu386Leu
M0140363 HOHDCILL_00047 50033 4 Oral 0.50 protein_coding synonymous_variant LOW 1170A>G Thr390Thr
M0140364 HOHDCILL_00047 50102 4 Oral 0.50 protein_coding synonymous_variant LOW 1239A>G Val413Val
M0140365 HOHDCILL_00047 50123 3 Oral 0.38 protein_coding synonymous_variant LOW 1260G>A Glu420Glu
M0140366 HOHDCILL_00047 50177 4 Oral 0.50 protein_coding synonymous_variant LOW 1314A>G Glu438Glu
M0140367 HOHDCILL_00047 50258 4 Oral 0.50 protein_coding synonymous_variant LOW 1395A>T Gly465Gly
M0140368 HOHDCILL_00047 50282 4 Oral 0.50 protein_coding synonymous_variant LOW 1419T>C Ile473Ile
M0140369 HOHDCILL_00047 50321 4 Oral 0.50 protein_coding synonymous_variant LOW 1458T>C Ala486Ala
M0140370 HOHDCILL_00047 50363 3 Oral 0.38 protein_coding synonymous_variant LOW 1500A>G Lys500Lys
M0140371 HOHDCILL_00047 50391 4 Oral 0.50 protein_coding missense_variant MODERATE 1528C>T Leu510Phe
M0140372 HOHDCILL_00047 50402 4 Oral 0.50 protein_coding synonymous_variant LOW 1539C>T Arg513Arg
M0140373 HOHDCILL_00047 50426 4 Oral 0.50 protein_coding synonymous_variant LOW 1563G>A Lys521Lys
M0140374 HOHDCILL_00047 50432 4 Oral 0.50 protein_coding synonymous_variant LOW 1569C>T Asp523Asp
M0140375 HOHDCILL_00047 50519 3 Oral 0.38 protein_coding synonymous_variant LOW 1656A>G Gly552Gly
M0140376 HOHDCILL_00047 50543 3 Oral 0.38 protein_coding synonymous_variant LOW 1680A>T Gly560Gly
M0140377 HOHDCILL_00047 50546 3 Oral 0.38 protein_coding synonymous_variant LOW 1683C>A Leu561Leu
M0140378 HOHDCILL_00047 50552 3 Oral 0.38 protein_coding synonymous_variant LOW 1689G>T Ser563Ser
M0140379 HOHDCILL_00047 50600 3 Oral 0.38 protein_coding synonymous_variant LOW 1737G>A Glu579Glu
M0140380 HOHDCILL_00047 50681 3 Oral 0.38 protein_coding synonymous_variant LOW 1818C>T Val606Val
M0140381 HOHDCILL_00047 50696 3 Oral 0.38 protein_coding synonymous_variant LOW 1833T>A Ser611Ser
M0140382 HOHDCILL_00047 50818 4 Oral 0.50 protein_coding missense_variant MODERATE 1955T>A Leu652Gln
M0140383 HOHDCILL_00047 50873 4 Oral 0.50 protein_coding synonymous_variant LOW 2010C>T Ile670Ile
M0140384 HOHDCILL_00047 50904 3 Oral 0.38 protein_coding synonymous_variant LOW 2041C>T Leu681Leu
M0140385 HOHDCILL_00047 50990 3 Oral 0.38 protein_coding synonymous_variant LOW 2127C>T Arg709Arg
M0140386 HOHDCILL_00047 51026 3 Oral 0.38 protein_coding synonymous_variant LOW 2163A>G Ala721Ala
M0140387 HOHDCILL_00047 51236 3 Oral 0.38 protein_coding synonymous_variant LOW 2373G>A Lys791Lys
M0140388 HOHDCILL_00047 51357 3 Oral 0.38 protein_coding missense_variant MODERATE 2494T>C Ser832Pro
M0140389 HOHDCILL_00047 51551 3 Oral 0.38 protein_coding synonymous_variant LOW 2688G>A Leu896Leu
M0140390 HOHDCILL_00047 51931 3 Oral 0.38 protein_coding missense_variant MODERATE 3068C>G Ala1023Gly
M0140391 HOHDCILL_00048 52072 3 Oral 0.38 protein_coding missense_variant MODERATE 25T>C Tyr9His
M0140392 HOHDCILL_00048 52077 3 Oral 0.38 protein_coding synonymous_variant LOW 30T>C Val10Val
M0140393 HOHDCILL_00048 52113 3 Oral 0.38 protein_coding synonymous_variant LOW 66T>C Ala22Ala
M0140394 HOHDCILL_00048 52239 3 Oral 0.38 protein_coding synonymous_variant LOW 192A>G Gln64Gln
M0140395 HOHDCILL_00048 52455 3 Oral 0.38 protein_coding synonymous_variant LOW 408G>T Thr136Thr
M0140396 HOHDCILL_00048 52623 3 Oral 0.38 protein_coding synonymous_variant LOW 576G>A Leu192Leu
M0140397 HOHDCILL_00048 52864 4 Oral 0.50 protein_coding missense_variant MODERATE 817T>A Ser273Thr
M0140398 HOHDCILL_00048 52977 3 Oral 0.38 protein_coding synonymous_variant LOW 930G>T Ala310Ala
M0140399 HOHDCILL_00048 53379 4 Oral 0.50 protein_coding synonymous_variant LOW 1332G>A Glu444Glu
M0140400 HOHDCILL_00048 53415 4 Oral 0.50 protein_coding synonymous_variant LOW 1368C>T Asp456Asp
M0140401 HOHDCILL_00046 53556 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4695A>C None
M0140402 HOHDCILL_00046 53561 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4700G>A None
M0140403 HOHDCILL_00046 53582 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4721A>G None
M0140404 HOHDCILL_00046 53622 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4761T>C None
M0140405 HOHDCILL_00046 53854 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4993A>T None
M0140406 HOHDCILL_00047 53864 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *1800A>G None
M0140407 HOHDCILL_00049 53944 3 Oral 0.38 protein_coding synonymous_variant LOW 2067T>C Ser689Ser
M0140408 HOHDCILL_00049 54073 3 Oral 0.38 protein_coding synonymous_variant LOW 1938T>C Thr646Thr
M0140409 HOHDCILL_00049 54196 3 Oral 0.38 protein_coding synonymous_variant LOW 1815C>T Ser605Ser
M0140410 HOHDCILL_00049 54197 3 Oral 0.38 protein_coding missense_variant MODERATE 1814G>C Ser605Thr
M0140411 HOHDCILL_00049 54199 3 Oral 0.38 protein_coding synonymous_variant LOW 1812C>T Ala604Ala
M0140412 HOHDCILL_00049 54202 3 Oral 0.38 protein_coding synonymous_variant LOW 1809T>A Thr603Thr
M0140413 HOHDCILL_00049 54205 3 Oral 0.38 protein_coding synonymous_variant LOW 1806T>A Thr602Thr
M0140414 HOHDCILL_00049 54424 3 Oral 0.38 protein_coding synonymous_variant LOW 1587C>T Asp529Asp
M0140415 HOHDCILL_00049 54466 3 Oral 0.38 protein_coding synonymous_variant LOW 1545G>A Lys515Lys
M0140416 HOHDCILL_00049 54540 3 Oral 0.38 protein_coding synonymous_variant LOW 1471C>T Leu491Leu
M0140417 HOHDCILL_00049 54544 3 Oral 0.38 protein_coding synonymous_variant LOW 1467A>G Glu489Glu
M0140418 HOHDCILL_00049 54568 3 Oral 0.38 protein_coding synonymous_variant LOW 1443C>T Asp481Asp
M0140419 HOHDCILL_00049 54681 3 Oral 0.38 protein_coding missense_variant MODERATE 1330T>C Phe444Leu
M0140420 HOHDCILL_00049 54739 3 Oral 0.38 protein_coding synonymous_variant LOW 1272C>T Gly424Gly
M0140421 HOHDCILL_00049 54811 3 Oral 0.38 protein_coding synonymous_variant LOW 1200A>G Lys400Lys
M0140422 HOHDCILL_00049 54868 3 Oral 0.38 protein_coding synonymous_variant LOW 1143T>C Phe381Phe
M0140423 HOHDCILL_00049 54883 3 Oral 0.38 protein_coding synonymous_variant LOW 1128C>T Phe376Phe
M0140424 HOHDCILL_00049 54913 3 Oral 0.38 protein_coding synonymous_variant LOW 1098C>T His366His
M0140425 HOHDCILL_00049 54937 3 Oral 0.38 protein_coding synonymous_variant LOW 1074G>A Gln358Gln
M0140426 HOHDCILL_00049 55069 3 Oral 0.38 protein_coding synonymous_variant LOW 942T>C Tyr314Tyr
M0140427 HOHDCILL_00049 55216 3 Oral 0.38 protein_coding synonymous_variant LOW 795A>T Ala265Ala
M0140428 HOHDCILL_00049 55237 3 Oral 0.38 protein_coding synonymous_variant LOW 774G>A Glu258Glu
M0140429 HOHDCILL_00049 55240 3 Oral 0.38 protein_coding synonymous_variant LOW 771C>A Gly257Gly
M0140430 HOHDCILL_00049 55375 3 Oral 0.38 protein_coding synonymous_variant LOW 636G>C Ala212Ala
M0140431 HOHDCILL_00049 55394 3 Oral 0.38 protein_coding missense_variant MODERATE 617T>C Val206Ala
M0140432 HOHDCILL_00049 55401 3 Oral 0.38 protein_coding missense_variant MODERATE 610G>C Val204Leu
M0140433 HOHDCILL_00049 55402 3 Oral 0.38 protein_coding synonymous_variant LOW 609G>A Thr203Thr
M0140434 HOHDCILL_00049 55582 3 Oral 0.38 protein_coding synonymous_variant LOW 429T>C Tyr143Tyr
M0140435 HOHDCILL_00049 55603 3 Oral 0.38 protein_coding synonymous_variant LOW 408A>G Val136Val
M0140436 HOHDCILL_00049 55867 3 Oral 0.38 protein_coding synonymous_variant LOW 144T>C Asn48Asn
M0140437 HOHDCILL_00050 56170 3 Oral 0.38 protein_coding synonymous_variant LOW 3105C>T Asn1035Asn
M0140438 HOHDCILL_00050 56452 3 Oral 0.38 protein_coding synonymous_variant LOW 2823T>A Ala941Ala
M0140439 HOHDCILL_00050 56470 3 Oral 0.38 protein_coding synonymous_variant LOW 2805T>C Gly935Gly
M0140440 HOHDCILL_00050 56545 3 Oral 0.38 protein_coding synonymous_variant LOW 2730T>C Ser910Ser
M0140441 HOHDCILL_00050 56698 3 Oral 0.38 protein_coding synonymous_variant LOW 2577T>A Pro859Pro
M0140442 HOHDCILL_00050 56713 3 Oral 0.38 protein_coding synonymous_variant LOW 2562T>C Gly854Gly
M0140443 HOHDCILL_00050 56788 3 Oral 0.38 protein_coding synonymous_variant LOW 2487T>A Thr829Thr
M0140444 HOHDCILL_00050 56806 3 Oral 0.38 protein_coding synonymous_variant LOW 2469A>G Glu823Glu
M0140445 HOHDCILL_00050 56836 3 Oral 0.38 protein_coding synonymous_variant LOW 2439A>C Gly813Gly
M0140446 HOHDCILL_00050 56881 3 Oral 0.38 protein_coding synonymous_variant LOW 2394G>T Thr798Thr
M0140447 HOHDCILL_00050 56926 3 Oral 0.38 protein_coding synonymous_variant LOW 2349C>T Gly783Gly
M0140448 HOHDCILL_00050 57016 3 Oral 0.38 protein_coding synonymous_variant LOW 2259A>T Gly753Gly
M0140449 HOHDCILL_00050 57121 3 Oral 0.38 protein_coding synonymous_variant LOW 2154T>C Phe718Phe
M0140450 HOHDCILL_00050 57238 3 Oral 0.38 protein_coding synonymous_variant LOW 2037G>A Leu679Leu
M0140451 HOHDCILL_00050 57241 3 Oral 0.38 protein_coding synonymous_variant LOW 2034T>C Ser678Ser
M0140452 HOHDCILL_00050 57268 3 Oral 0.38 protein_coding synonymous_variant LOW 2007C>T Ser669Ser
M0140453 HOHDCILL_00050 57286 3 Oral 0.38 protein_coding synonymous_variant LOW 1989G>T Val663Val
M0140454 HOHDCILL_00050 57295 3 Oral 0.38 protein_coding synonymous_variant LOW 1980C>T Tyr660Tyr
M0140455 HOHDCILL_00050 57328 3 Oral 0.38 protein_coding synonymous_variant LOW 1947T>C Ser649Ser
M0140456 HOHDCILL_00050 57349 3 Oral 0.38 protein_coding synonymous_variant LOW 1926A>G Ala642Ala
M0140457 HOHDCILL_00050 57351 3 Oral 0.38 protein_coding missense_variant MODERATE 1924G>T Ala642Ser
M0140458 HOHDCILL_00050 57682 3 Oral 0.38 protein_coding synonymous_variant LOW 1593G>T Thr531Thr
M0140459 HOHDCILL_00050 57718 3 Oral 0.38 protein_coding synonymous_variant LOW 1557C>T Asp519Asp
M0140460 HOHDCILL_00050 57852 3 Oral 0.38 protein_coding missense_variant MODERATE 1423A>G Ile475Val
M0140461 HOHDCILL_00050 57974 3 Oral 0.38 protein_coding stop_gained HIGH 1301C>A Ser434*
M0140462 HOHDCILL_00050 57975 3 Oral 0.38 protein_coding missense_variant MODERATE 1300T>C Ser434Pro
M0140463 HOHDCILL_00050 57991 3 Oral 0.38 protein_coding synonymous_variant LOW 1284T>C Gly428Gly
M0140464 HOHDCILL_00050 58087 3 Oral 0.38 protein_coding synonymous_variant LOW 1188T>C Thr396Thr
M0140465 HOHDCILL_00050 58231 3 Oral 0.38 protein_coding synonymous_variant LOW 1044T>A Ile348Ile
M0140466 HOHDCILL_00050 58318 3 Oral 0.38 protein_coding synonymous_variant LOW 957A>G Leu319Leu
M0140467 HOHDCILL_00050 58320 3 Oral 0.38 protein_coding synonymous_variant LOW 955C>T Leu319Leu
M0140468 HOHDCILL_00050 58327 3 Oral 0.38 protein_coding synonymous_variant LOW 948C>T Val316Val
M0140469 HOHDCILL_00050 58525 3 Oral 0.38 protein_coding synonymous_variant LOW 750A>G Glu250Glu
M0140470 HOHDCILL_00050 58567 3 Oral 0.38 protein_coding synonymous_variant LOW 708T>C Asp236Asp
M0140471 HOHDCILL_00050 58570 3 Oral 0.38 protein_coding synonymous_variant LOW 705C>T Asn235Asn
M0140472 HOHDCILL_00050 58624 3 Oral 0.38 protein_coding synonymous_variant LOW 651T>C Tyr217Tyr
M0140473 HOHDCILL_00050 58633 3 Oral 0.38 protein_coding synonymous_variant LOW 642G>A Ser214Ser
M0140474 HOHDCILL_00050 58636 3 Oral 0.38 protein_coding synonymous_variant LOW 639C>T Ser213Ser
M0140475 HOHDCILL_00050 58669 3 Oral 0.38 protein_coding synonymous_variant LOW 606A>C Ile202Ile
M0140476 HOHDCILL_00050 58672 3 Oral 0.38 protein_coding synonymous_variant LOW 603C>T Asp201Asp
M0140477 HOHDCILL_00050 58699 3 Oral 0.38 protein_coding synonymous_variant LOW 576T>C Gly192Gly
M0140478 HOHDCILL_00050 58744 3 Oral 0.38 protein_coding synonymous_variant LOW 531C>T Ser177Ser
M0140479 HOHDCILL_00050 58756 3 Oral 0.38 protein_coding synonymous_variant LOW 519T>C Arg173Arg
M0140480 HOHDCILL_00050 58783 3 Oral 0.38 protein_coding synonymous_variant LOW 492C>T Pro164Pro
M0140481 HOHDCILL_00050 58867 3 Oral 0.38 protein_coding synonymous_variant LOW 408C>T Val136Val
M0140482 HOHDCILL_00050 59041 3 Oral 0.38 protein_coding synonymous_variant LOW 234A>G Thr78Thr
M0140483 HOHDCILL_00050 59098 3 Oral 0.38 protein_coding synonymous_variant LOW 177T>C Asn59Asn
M0140484 HOHDCILL_00050 59107 3 Oral 0.38 protein_coding synonymous_variant LOW 168G>A Gly56Gly
M0140485 HOHDCILL_00050 59143 3 Oral 0.38 protein_coding synonymous_variant LOW 132C>T Gly44Gly
M0140486 HOHDCILL_00049 59348 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3338C>T None
M0140487 HOHDCILL_00052 60553 3 Oral 0.38 protein_coding synonymous_variant LOW 321T>C Ala107Ala
M0140488 HOHDCILL_00052 60595 3 Oral 0.38 protein_coding synonymous_variant LOW 279T>C His93His
M0140489 HOHDCILL_00052 60655 3 Oral 0.38 protein_coding synonymous_variant LOW 219C>T Cys73Cys
M0140490 HOHDCILL_00052 60683 3 Oral 0.38 protein_coding missense_variant MODERATE 191T>A Ile64Lys
M0140491 HOHDCILL_00052 60688 3 Oral 0.38 protein_coding synonymous_variant LOW 186C>T Cys62Cys
M0140492 HOHDCILL_00052 60715 3 Oral 0.38 protein_coding synonymous_variant LOW 159G>A Ala53Ala
M0140493 HOHDCILL_00052 60769 3 Oral 0.38 protein_coding synonymous_variant LOW 105T>A Ile35Ile
M0140494 HOHDCILL_00052 60775 3 Oral 0.38 protein_coding synonymous_variant LOW 99T>C Gly33Gly
M0140495 HOHDCILL_00052 60817 3 Oral 0.38 protein_coding synonymous_variant LOW 57T>A Arg19Arg
M0140496 HOHDCILL_00052 60826 3 Oral 0.38 protein_coding missense_variant MODERATE 48C>G Asp16Glu
M0140497 HOHDCILL_00052 60850 3 Oral 0.38 protein_coding synonymous_variant LOW 24A>G Arg8Arg
M0140498 HOHDCILL_00052 60856 3 Oral 0.38 protein_coding synonymous_variant LOW 18G>A Leu6Leu
M0140499 HOHDCILL_00049 60877 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4867C>T None
M0140500 HOHDCILL_00049 60881 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4871T>C None
M0140501 HOHDCILL_00049 60884 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -4874T>A None
M0140502 HOHDCILL_00053 60895 3 Oral 0.38 protein_coding missense_variant MODERATE 639T>G Asn213Lys
M0140503 HOHDCILL_00053 60900 3 Oral 0.38 protein_coding missense_variant MODERATE 634A>G Lys212Glu
M0140504 HOHDCILL_00053 60901 3 Oral 0.38 protein_coding synonymous_variant LOW 633G>A Glu211Glu
M0140505 HOHDCILL_00053 60910 3 Oral 0.38 protein_coding synonymous_variant LOW 624C>T Arg208Arg
M0140506 HOHDCILL_00053 60945 3 Oral 0.38 protein_coding synonymous_variant LOW 589C>A Arg197Arg
M0140507 HOHDCILL_00053 60946 3 Oral 0.38 protein_coding synonymous_variant LOW 588G>A Leu196Leu
M0140508 HOHDCILL_00053 60994 3 Oral 0.38 protein_coding synonymous_variant LOW 540A>C Ala180Ala
M0140509 HOHDCILL_00053 61000 3 Oral 0.38 protein_coding synonymous_variant LOW 534G>A Pro178Pro
M0140510 HOHDCILL_00053 61030 3 Oral 0.38 protein_coding synonymous_variant LOW 504T>C Gly168Gly
M0140511 HOHDCILL_00053 61045 3 Oral 0.38 protein_coding synonymous_variant LOW 489G>A Lys163Lys
M0140512 HOHDCILL_00053 61051 3 Oral 0.38 protein_coding synonymous_variant LOW 483A>G Lys161Lys
M0140513 HOHDCILL_00053 61084 3 Oral 0.38 protein_coding synonymous_variant LOW 450A>G Glu150Glu
M0140514 HOHDCILL_00053 61118 3 Oral 0.38 protein_coding missense_variant MODERATE 416A>T Tyr139Phe
M0140515 HOHDCILL_00053 61141 3 Oral 0.38 protein_coding synonymous_variant LOW 393C>A Val131Val
M0140516 HOHDCILL_00053 61147 3 Oral 0.38 protein_coding synonymous_variant LOW 387G>A Pro129Pro
M0140517 HOHDCILL_00053 61162 3 Oral 0.38 protein_coding synonymous_variant LOW 372T>C Asp124Asp
M0140518 HOHDCILL_00053 61264 3 Oral 0.38 protein_coding synonymous_variant LOW 270A>T Ser90Ser
M0140519 HOHDCILL_00054 62131 3 Oral 0.38 protein_coding missense_variant MODERATE 552C>G Asp184Glu
M0140520 HOHDCILL_00054 62140 3 Oral 0.38 protein_coding synonymous_variant LOW 543G>T Leu181Leu
M0140521 HOHDCILL_00054 62188 3 Oral 0.38 protein_coding synonymous_variant LOW 495C>T Pro165Pro
M0140522 HOHDCILL_00054 62212 3 Oral 0.38 protein_coding synonymous_variant LOW 471A>G Val157Val
M0140523 HOHDCILL_00054 62275 3 Oral 0.38 protein_coding synonymous_variant LOW 408C>T Cys136Cys
M0140524 HOHDCILL_00054 62349 3 Oral 0.38 protein_coding missense_variant MODERATE 334A>T Met112Leu
M0140525 HOHDCILL_00054 62383 3 Oral 0.38 protein_coding synonymous_variant LOW 300C>T Leu100Leu
M0140526 HOHDCILL_00054 62386 3 Oral 0.38 protein_coding synonymous_variant LOW 297A>T Thr99Thr
M0140527 HOHDCILL_00054 62398 3 Oral 0.38 protein_coding synonymous_variant LOW 285A>G Glu95Glu
M0140528 HOHDCILL_00054 62412 3 Oral 0.38 protein_coding synonymous_variant LOW 271A>C Arg91Arg
M0140529 HOHDCILL_00054 62416 3 Oral 0.38 protein_coding synonymous_variant LOW 267G>A Pro89Pro
M0140530 HOHDCILL_00054 62461 3 Oral 0.38 protein_coding synonymous_variant LOW 222T>C Phe74Phe
M0140531 HOHDCILL_00054 62476 3 Oral 0.38 protein_coding synonymous_variant LOW 207C>T Phe69Phe
M0140532 HOHDCILL_00054 62590 3 Oral 0.38 protein_coding synonymous_variant LOW 93T>C Pro31Pro
M0140533 HOHDCILL_00055 62784 3 Oral 0.38 protein_coding synonymous_variant LOW 2316T>G Gly772Gly
M0140534 HOHDCILL_00055 62861 3 Oral 0.38 protein_coding synonymous_variant LOW 2239C>T Leu747Leu
M0140535 HOHDCILL_00055 62924 3 Oral 0.38 protein_coding missense_variant MODERATE 2176G>A Val726Ile
M0140536 HOHDCILL_00055 62985 3 Oral 0.38 protein_coding synonymous_variant LOW 2115A>T Val705Val
M0140537 HOHDCILL_00055 63075 3 Oral 0.38 protein_coding synonymous_variant LOW 2025A>G Lys675Lys
M0140538 HOHDCILL_00055 63096 3 Oral 0.38 protein_coding synonymous_variant LOW 2004G>A Gln668Gln
M0140539 HOHDCILL_00055 63102 3 Oral 0.38 protein_coding synonymous_variant LOW 1998T>C Asn666Asn
M0140540 HOHDCILL_00055 63105 3 Oral 0.38 protein_coding synonymous_variant LOW 1995T>C Leu665Leu
M0140541 HOHDCILL_00055 63107 3 Oral 0.38 protein_coding missense_variant MODERATE 1993C>T Leu665Phe
M0140542 HOHDCILL_00055 63108 3 Oral 0.38 protein_coding synonymous_variant LOW 1992T>C Ile664Ile
M0140543 HOHDCILL_00055 63126 3 Oral 0.38 protein_coding synonymous_variant LOW 1974G>A Gln658Gln
M0140544 HOHDCILL_00055 63129 3 Oral 0.38 protein_coding synonymous_variant LOW 1971G>A Gln657Gln
M0140545 HOHDCILL_00055 63174 3 Oral 0.38 protein_coding synonymous_variant LOW 1926C>T Val642Val
M0140546 HOHDCILL_00055 63408 3 Oral 0.38 protein_coding synonymous_variant LOW 1692C>T His564His
M0140547 HOHDCILL_00055 63438 3 Oral 0.38 protein_coding synonymous_variant LOW 1662A>T Thr554Thr
M0140548 HOHDCILL_00055 63468 3 Oral 0.38 protein_coding synonymous_variant LOW 1632T>C Ala544Ala
M0140549 HOHDCILL_00055 63486 3 Oral 0.38 protein_coding synonymous_variant LOW 1614T>C Val538Val
M0140550 HOHDCILL_00055 63492 3 Oral 0.38 protein_coding synonymous_variant LOW 1608G>A Gly536Gly
M0140551 HOHDCILL_00055 63543 3 Oral 0.38 protein_coding synonymous_variant LOW 1557T>G Thr519Thr
M0140552 HOHDCILL_00055 63585 3 Oral 0.38 protein_coding synonymous_variant LOW 1515C>T Asp505Asp
M0140553 HOHDCILL_00055 63634 3 Oral 0.38 protein_coding missense_variant MODERATE 1466C>G Ala489Gly
M0140554 HOHDCILL_00055 63886 3 Oral 0.38 protein_coding missense_variant MODERATE 1214C>T Ala405Val
M0140555 HOHDCILL_00055 63903 3 Oral 0.38 protein_coding synonymous_variant LOW 1197A>G Thr399Thr
M0140556 HOHDCILL_00055 63909 3 Oral 0.38 protein_coding synonymous_variant LOW 1191A>T Pro397Pro
M0140557 HOHDCILL_00055 64008 3 Oral 0.38 protein_coding synonymous_variant LOW 1092A>G Thr364Thr
M0140558 HOHDCILL_00055 64024 3 Oral 0.38 protein_coding missense_variant MODERATE 1076C>G Ala359Gly
M0140559 HOHDCILL_00055 64029 3 Oral 0.38 protein_coding synonymous_variant LOW 1071T>G Ala357Ala
M0140560 HOHDCILL_00055 64089 3 Oral 0.38 protein_coding synonymous_variant LOW 1011T>A Arg337Arg
M0140561 HOHDCILL_00055 64347 3 Oral 0.38 protein_coding synonymous_variant LOW 753G>A Glu251Glu
M0140562 HOHDCILL_00055 64446 3 Oral 0.38 protein_coding synonymous_variant LOW 654C>T Leu218Leu
M0140563 HOHDCILL_00055 64494 3 Oral 0.38 protein_coding synonymous_variant LOW 606C>T Tyr202Tyr
M0140564 HOHDCILL_00055 64572 3 Oral 0.38 protein_coding synonymous_variant LOW 528A>G Glu176Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
HOHDCILL_00038 PHI:3317 hsdR 74.7 0 7 1035 0.9942 0.9932 rodents Glasser's disease involved in pathogenicity reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
HOHDCILL_00045 QUB69704.1|GH109 97.2 1.55000003643076e-317 1 432 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term