Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3398
  Reference Plasmid   MGYG000303719__MGYG000303719_2
  Reference Plasmid Size   269853
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0141443 HKPPINGH_00002 1098 3 Vaginal 0.60 protein_coding synonymous_variant LOW 249A>T Ala83Ala
M0141444 HKPPINGH_00002 1114 3 Vaginal 0.60 protein_coding missense_variant MODERATE 233T>A Leu78Gln
M0141445 HKPPINGH_00002 1134 3 Vaginal 0.60 protein_coding synonymous_variant LOW 213T>G Ala71Ala
M0141446 HKPPINGH_00001 1397 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -625A>G None
M0141447 HKPPINGH_00007 4761 3 Vaginal 0.60 protein_coding missense_variant MODERATE 463A>G Asn155Asp
M0141448 HKPPINGH_00007 4944 3 Vaginal 0.60 protein_coding missense_variant MODERATE 280C>T Pro94Ser
M0141449 HKPPINGH_00002 5826 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4480G>A None
M0141450 HKPPINGH_00002 5851 4 Vaginal 0.80 protein_coding upstream_gene_variant MODIFIER -4505G>A None
M0141451 HKPPINGH_00009 6059 3 Vaginal 0.60 protein_coding synonymous_variant LOW 72G>A Ala24Ala
M0141452 HKPPINGH_00009 6077 4 Vaginal 0.80 protein_coding synonymous_variant LOW 90G>A Thr30Thr
M0141453 HKPPINGH_00009 6158 3 Vaginal 0.60 protein_coding synonymous_variant LOW 171G>T Ser57Ser
M0141454 HKPPINGH_00009 6185 4 Vaginal 0.80 protein_coding synonymous_variant LOW 198T>C Tyr66Tyr
M0141455 HKPPINGH_00009 6219 4 Vaginal 0.80 protein_coding missense_variant MODERATE 232C>A Gln78Lys
M0141456 HKPPINGH_00009 6297 4 Vaginal 0.80 protein_coding missense_variant MODERATE 310A>C Met104Leu
M0141457 HKPPINGH_00132 130477 3 Vaginal 0.60 protein_coding synonymous_variant LOW 849A>C Thr283Thr
M0141458 HKPPINGH_00132 130705 3 Vaginal 0.60 protein_coding synonymous_variant LOW 621G>A Gln207Gln
M0141459 HKPPINGH_00132 130759 3 Vaginal 0.60 protein_coding synonymous_variant LOW 567T>A Ser189Ser
M0141460 HKPPINGH_00132 130834 3 Vaginal 0.60 protein_coding synonymous_variant LOW 492C>T Ser164Ser
M0141461 HKPPINGH_00132 130864 3 Vaginal 0.60 protein_coding synonymous_variant LOW 462G>A Lys154Lys
M0141462 HKPPINGH_00132 130983 3 Vaginal 0.60 protein_coding synonymous_variant LOW 343T>C Leu115Leu
M0141463 HKPPINGH_00132 131050 3 Vaginal 0.60 protein_coding synonymous_variant LOW 276A>T Pro92Pro
M0141464 HKPPINGH_00132 131174 3 Vaginal 0.60 protein_coding missense_variant MODERATE 152T>C Val51Ala
M0141465 HKPPINGH_00132 131313 3 Vaginal 0.60 protein_coding missense_variant MODERATE 13A>T Ile5Leu
M0141466 HKPPINGH_00133 132203 3 Vaginal 0.60 protein_coding missense_variant MODERATE 541A>G Asn181Asp
M0141467 HKPPINGH_00133 132369 3 Vaginal 0.60 protein_coding synonymous_variant LOW 375C>T Ala125Ala
M0141468 HKPPINGH_00133 132393 3 Vaginal 0.60 protein_coding synonymous_variant LOW 351A>G Ala117Ala
M0141469 HKPPINGH_00133 132399 3 Vaginal 0.60 protein_coding synonymous_variant LOW 345G>A Ala115Ala
M0141470 HKPPINGH_00133 132400 3 Vaginal 0.60 protein_coding missense_variant MODERATE 344C>T Ala115Val
M0141471 HKPPINGH_00133 132412 3 Vaginal 0.60 protein_coding missense_variant MODERATE 332C>G Ala111Gly
M0141472 HKPPINGH_00133 132471 3 Vaginal 0.60 protein_coding synonymous_variant LOW 273T>C Cys91Cys
M0141473 HKPPINGH_00133 132507 3 Vaginal 0.60 protein_coding synonymous_variant LOW 237T>C Gly79Gly
M0141474 HKPPINGH_00133 132540 3 Vaginal 0.60 protein_coding synonymous_variant LOW 204A>T Pro68Pro
M0141475 HKPPINGH_00133 132546 3 Vaginal 0.60 protein_coding synonymous_variant LOW 198C>T Ile66Ile
M0141476 HKPPINGH_00133 132549 3 Vaginal 0.60 protein_coding synonymous_variant LOW 195T>C Gly65Gly
M0141477 HKPPINGH_00133 132582 3 Vaginal 0.60 protein_coding synonymous_variant LOW 162C>A Ser54Ser
M0141478 HKPPINGH_00133 132589 3 Vaginal 0.60 protein_coding missense_variant MODERATE 155G>A Arg52Lys
M0141479 HKPPINGH_00133 132633 3 Vaginal 0.60 protein_coding synonymous_variant LOW 111A>G Gly37Gly
M0141480 HKPPINGH_00135 134781 3 Vaginal 0.60 protein_coding synonymous_variant LOW 177C>T Arg59Arg
M0141481 HKPPINGH_00136 135101 3 Vaginal 0.60 protein_coding synonymous_variant LOW 633T>C Arg211Arg
M0141482 HKPPINGH_00136 135204 3 Vaginal 0.60 protein_coding missense_variant MODERATE 530T>A Ile177Lys
M0141483 HKPPINGH_00136 135221 3 Vaginal 0.60 protein_coding synonymous_variant LOW 513C>A Thr171Thr
M0141484 HKPPINGH_00136 135245 3 Vaginal 0.60 protein_coding synonymous_variant LOW 489C>T Val163Val
M0141485 HKPPINGH_00136 135299 3 Vaginal 0.60 protein_coding synonymous_variant LOW 435C>T Asn145Asn
M0141486 HKPPINGH_00136 135307 3 Vaginal 0.60 protein_coding missense_variant MODERATE 427A>C Lys143Gln
M0141487 HKPPINGH_00136 135308 3 Vaginal 0.60 protein_coding synonymous_variant LOW 426C>T Thr142Thr
M0141488 HKPPINGH_00136 135311 3 Vaginal 0.60 protein_coding synonymous_variant LOW 423G>A Gln141Gln
M0141489 HKPPINGH_00136 135317 3 Vaginal 0.60 protein_coding synonymous_variant LOW 417G>T Leu139Leu
M0141490 HKPPINGH_00136 135320 3 Vaginal 0.60 protein_coding synonymous_variant LOW 414G>T Gly138Gly
M0141491 HKPPINGH_00136 135711 3 Vaginal 0.60 protein_coding missense_variant MODERATE 23C>A Ala8Glu
M0141492 HKPPINGH_00137 135872 3 Vaginal 0.60 protein_coding synonymous_variant LOW 408T>C Asn136Asn
M0141493 HKPPINGH_00137 135884 3 Vaginal 0.60 protein_coding synonymous_variant LOW 396C>T Arg132Arg
M0141494 HKPPINGH_00138 136464 3 Vaginal 0.60 protein_coding synonymous_variant LOW 612G>A Leu204Leu
M0141495 HKPPINGH_00138 136674 3 Vaginal 0.60 protein_coding synonymous_variant LOW 402A>T Gly134Gly
M0141496 HKPPINGH_00138 136956 3 Vaginal 0.60 protein_coding synonymous_variant LOW 120A>T Pro40Pro
M0141497 HKPPINGH_00139 137411 3 Vaginal 0.60 protein_coding synonymous_variant LOW 753G>A Glu251Glu
M0141498 HKPPINGH_00139 137486 3 Vaginal 0.60 protein_coding synonymous_variant LOW 678C>A Gly226Gly
M0141499 HKPPINGH_00139 137516 3 Vaginal 0.60 protein_coding synonymous_variant LOW 648T>C Ser216Ser
M0141500 HKPPINGH_00139 137633 3 Vaginal 0.60 protein_coding synonymous_variant LOW 531C>T Ala177Ala
M0141501 HKPPINGH_00139 138044 3 Vaginal 0.60 protein_coding synonymous_variant LOW 120G>A Val40Val
M0141502 HKPPINGH_00139 138062 3 Vaginal 0.60 protein_coding synonymous_variant LOW 102T>C Ile34Ile
M0141503 HKPPINGH_00139 138071 3 Vaginal 0.60 protein_coding missense_variant MODERATE 93T>G Asp31Glu
M0141504 HKPPINGH_00140 138216 3 Vaginal 0.60 protein_coding missense_variant MODERATE 797C>A Ala266Glu
M0141505 HKPPINGH_00140 138539 3 Vaginal 0.60 protein_coding synonymous_variant LOW 474G>T Leu158Leu
M0141506 HKPPINGH_00140 138776 3 Vaginal 0.60 protein_coding synonymous_variant LOW 237C>T Gly79Gly
M0141507 HKPPINGH_00140 138791 3 Vaginal 0.60 protein_coding synonymous_variant LOW 222T>C Cys74Cys
M0141508 HKPPINGH_00140 138881 3 Vaginal 0.60 protein_coding synonymous_variant LOW 132T>C Tyr44Tyr
M0141509 HKPPINGH_00140 138887 3 Vaginal 0.60 protein_coding synonymous_variant LOW 126A>G Lys42Lys
M0141510 HKPPINGH_00141 139541 3 Vaginal 0.60 protein_coding missense_variant MODERATE 727G>T Ala243Ser
M0141511 HKPPINGH_00141 139546 3 Vaginal 0.60 protein_coding missense_variant MODERATE 722C>G Ala241Gly
M0141512 HKPPINGH_00141 139563 3 Vaginal 0.60 protein_coding synonymous_variant LOW 705T>A Ser235Ser
M0141513 HKPPINGH_00141 139578 3 Vaginal 0.60 protein_coding synonymous_variant LOW 690G>A Arg230Arg
M0141514 HKPPINGH_00141 139585 3 Vaginal 0.60 protein_coding missense_variant MODERATE 683C>A Thr228Asn
M0141515 HKPPINGH_00141 139590 3 Vaginal 0.60 protein_coding synonymous_variant LOW 678G>A Leu226Leu
M0141516 HKPPINGH_00141 139611 3 Vaginal 0.60 protein_coding synonymous_variant LOW 657C>T Ala219Ala
M0141517 HKPPINGH_00141 139794 3 Vaginal 0.60 protein_coding synonymous_variant LOW 474T>C Cys158Cys
M0141518 HKPPINGH_00141 139827 3 Vaginal 0.60 protein_coding synonymous_variant LOW 441C>T Ser147Ser
M0141519 HKPPINGH_00141 139842 3 Vaginal 0.60 protein_coding synonymous_variant LOW 426A>T Leu142Leu
M0141520 HKPPINGH_00141 139872 3 Vaginal 0.60 protein_coding synonymous_variant LOW 396G>A Ala132Ala
M0141521 HKPPINGH_00141 139902 3 Vaginal 0.60 protein_coding synonymous_variant LOW 366G>A Lys122Lys
M0141522 HKPPINGH_00141 139956 3 Vaginal 0.60 protein_coding synonymous_variant LOW 312G>C Thr104Thr
M0141523 HKPPINGH_00141 140016 3 Vaginal 0.60 protein_coding synonymous_variant LOW 252G>A Ser84Ser
M0141524 HKPPINGH_00142 140317 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1383C>T Asn461Asn
M0141525 HKPPINGH_00142 140318 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1382A>G Asn461Ser
M0141526 HKPPINGH_00142 140321 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1379G>A Gly460Glu
M0141527 HKPPINGH_00142 140326 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1374C>T Leu458Leu
M0141528 HKPPINGH_00142 140349 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1351A>C Ile451Leu
M0141529 HKPPINGH_00142 140365 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1335C>A Thr445Thr
M0141530 HKPPINGH_00142 140380 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1320C>A Ala440Ala
M0141531 HKPPINGH_00142 140392 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1308C>T Tyr436Tyr
M0141532 HKPPINGH_00142 140402 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1298T>C Val433Ala
M0141533 HKPPINGH_00142 140416 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1284A>C Arg428Ser
M0141534 HKPPINGH_00142 140417 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1283G>C Arg428Thr
M0141535 HKPPINGH_00142 140458 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1242G>T Pro414Pro
M0141536 HKPPINGH_00142 140542 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1158T>C His386His
M0141537 HKPPINGH_00142 140665 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1035G>A Thr345Thr
M0141538 HKPPINGH_00142 140881 3 Vaginal 0.60 protein_coding synonymous_variant LOW 819T>C Gly273Gly
M0141539 HKPPINGH_00142 140944 3 Vaginal 0.60 protein_coding synonymous_variant LOW 756C>A Ala252Ala
M0141540 HKPPINGH_00142 140953 3 Vaginal 0.60 protein_coding synonymous_variant LOW 747C>T Arg249Arg
M0141541 HKPPINGH_00142 141004 3 Vaginal 0.60 protein_coding synonymous_variant LOW 696G>T Ser232Ser
M0141542 HKPPINGH_00142 141028 3 Vaginal 0.60 protein_coding synonymous_variant LOW 672C>T Asp224Asp
M0141543 HKPPINGH_00142 141079 3 Vaginal 0.60 protein_coding synonymous_variant LOW 621T>C Tyr207Tyr
M0141544 HKPPINGH_00142 141082 3 Vaginal 0.60 protein_coding synonymous_variant LOW 618A>G Ala206Ala
M0141545 HKPPINGH_00142 141109 3 Vaginal 0.60 protein_coding synonymous_variant LOW 591T>C Tyr197Tyr
M0141546 HKPPINGH_00142 141145 3 Vaginal 0.60 protein_coding synonymous_variant LOW 555T>C Cys185Cys
M0141547 HKPPINGH_00142 141163 3 Vaginal 0.60 protein_coding synonymous_variant LOW 537T>C Ser179Ser
M0141548 HKPPINGH_00142 141199 3 Vaginal 0.60 protein_coding synonymous_variant LOW 501C>T Val167Val
M0141549 HKPPINGH_00142 141202 3 Vaginal 0.60 protein_coding synonymous_variant LOW 498C>T Asp166Asp
M0141550 HKPPINGH_00142 141247 3 Vaginal 0.60 protein_coding synonymous_variant LOW 453T>C Gly151Gly
M0141551 HKPPINGH_00142 141278 3 Vaginal 0.60 protein_coding missense_variant MODERATE 422C>G Ala141Gly
M0141552 HKPPINGH_00142 141283 3 Vaginal 0.60 protein_coding synonymous_variant LOW 417T>C Ser139Ser
M0141553 HKPPINGH_00142 141298 3 Vaginal 0.60 protein_coding synonymous_variant LOW 402T>A Ala134Ala
M0141554 HKPPINGH_00142 141310 3 Vaginal 0.60 protein_coding synonymous_variant LOW 390A>G Val130Val
M0141555 HKPPINGH_00142 141313 3 Vaginal 0.60 protein_coding synonymous_variant LOW 387C>T Asn129Asn
M0141556 HKPPINGH_00142 141322 3 Vaginal 0.60 protein_coding synonymous_variant LOW 378T>C Pro126Pro
M0141557 HKPPINGH_00142 141331 3 Vaginal 0.60 protein_coding synonymous_variant LOW 369G>T Ala123Ala
M0141558 HKPPINGH_00142 141332 3 Vaginal 0.60 protein_coding missense_variant MODERATE 368C>T Ala123Val
M0141559 HKPPINGH_00142 141379 3 Vaginal 0.60 protein_coding synonymous_variant LOW 321T>C Cys107Cys
M0141560 HKPPINGH_00142 141391 3 Vaginal 0.60 protein_coding synonymous_variant LOW 309T>C Arg103Arg
M0141561 HKPPINGH_00142 141392 3 Vaginal 0.60 protein_coding missense_variant MODERATE 308G>A Arg103His
M0141562 HKPPINGH_00142 141442 3 Vaginal 0.60 protein_coding synonymous_variant LOW 258G>T Ala86Ala
M0141563 HKPPINGH_00142 141462 3 Vaginal 0.60 protein_coding missense_variant MODERATE 238G>A Val80Met
M0141564 HKPPINGH_00142 141469 3 Vaginal 0.60 protein_coding synonymous_variant LOW 231A>G Ser77Ser
M0141565 HKPPINGH_00142 141472 3 Vaginal 0.60 protein_coding synonymous_variant LOW 228C>T Gly76Gly
M0141566 HKPPINGH_00142 141477 3 Vaginal 0.60 protein_coding synonymous_variant LOW 223T>C Leu75Leu
M0141567 HKPPINGH_00142 141478 3 Vaginal 0.60 protein_coding missense_variant MODERATE 222T>G Ile74Met
M0141568 HKPPINGH_00142 141487 3 Vaginal 0.60 protein_coding synonymous_variant LOW 213G>A Glu71Glu
M0141569 HKPPINGH_00142 141490 3 Vaginal 0.60 protein_coding synonymous_variant LOW 210T>C His70His
M0141570 HKPPINGH_00142 141493 3 Vaginal 0.60 protein_coding synonymous_variant LOW 207G>A Lys69Lys
M0141571 HKPPINGH_00142 141505 3 Vaginal 0.60 protein_coding synonymous_variant LOW 195G>A Ala65Ala
M0141572 HKPPINGH_00142 141511 3 Vaginal 0.60 protein_coding synonymous_variant LOW 189C>T Ser63Ser
M0141573 HKPPINGH_00142 141534 3 Vaginal 0.60 protein_coding synonymous_variant LOW 166T>C Leu56Leu
M0141574 HKPPINGH_00142 141538 3 Vaginal 0.60 protein_coding synonymous_variant LOW 162T>C Asn54Asn
M0141575 HKPPINGH_00142 141547 3 Vaginal 0.60 protein_coding synonymous_variant LOW 153T>C Val51Val
M0141576 HKPPINGH_00142 141574 3 Vaginal 0.60 protein_coding synonymous_variant LOW 126T>C His42His
M0141577 HKPPINGH_00142 141634 3 Vaginal 0.60 protein_coding synonymous_variant LOW 66A>G Ala22Ala
M0141578 HKPPINGH_00148 146816 3 Vaginal 0.60 protein_coding synonymous_variant LOW 756A>C Gly252Gly
M0141579 HKPPINGH_00146 150666 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4821A>G None
M0141580 HKPPINGH_00146 150668 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4823T>A None
M0141581 HKPPINGH_00150 151134 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1325C>T Thr442Ile
M0141582 HKPPINGH_00150 151352 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1107A>T Thr369Thr
M0141583 HKPPINGH_00150 151592 3 Vaginal 0.60 protein_coding synonymous_variant LOW 867G>T Arg289Arg
M0141584 HKPPINGH_00150 151649 3 Vaginal 0.60 protein_coding synonymous_variant LOW 810G>A Gln270Gln
M0141585 HKPPINGH_00150 151682 3 Vaginal 0.60 protein_coding synonymous_variant LOW 777C>T Val259Val
M0141586 HKPPINGH_00150 151925 3 Vaginal 0.60 protein_coding synonymous_variant LOW 534T>G Ala178Ala
M0141587 HKPPINGH_00150 152039 3 Vaginal 0.60 protein_coding synonymous_variant LOW 420T>G Ala140Ala
M0141588 HKPPINGH_00150 152041 3 Vaginal 0.60 protein_coding missense_variant MODERATE 418G>A Ala140Thr
M0141589 HKPPINGH_00150 152045 3 Vaginal 0.60 protein_coding synonymous_variant LOW 414C>T Phe138Phe
M0141590 HKPPINGH_00150 152108 3 Vaginal 0.60 protein_coding synonymous_variant LOW 351T>C Val117Val
M0141591 HKPPINGH_00150 152372 3 Vaginal 0.60 protein_coding synonymous_variant LOW 87A>G Val29Val
M0141592 HKPPINGH_00150 152420 3 Vaginal 0.60 protein_coding synonymous_variant LOW 39A>C Ser13Ser
M0141593 HKPPINGH_00151 152636 3 Vaginal 0.60 protein_coding synonymous_variant LOW 432C>T Gly144Gly
M0141594 HKPPINGH_00152 153312 3 Vaginal 0.60 protein_coding synonymous_variant LOW 2767T>C Leu923Leu
M0141595 HKPPINGH_00152 153487 3 Vaginal 0.60 protein_coding synonymous_variant LOW 2592C>T His864His
M0141596 HKPPINGH_00152 153703 3 Vaginal 0.60 protein_coding synonymous_variant LOW 2376A>C Arg792Arg
M0141597 HKPPINGH_00152 153736 3 Vaginal 0.60 protein_coding synonymous_variant LOW 2343C>T Pro781Pro
M0141598 HKPPINGH_00152 154016 3 Vaginal 0.60 protein_coding missense_variant MODERATE 2063A>G Asn688Ser
M0141599 HKPPINGH_00152 154060 3 Vaginal 0.60 protein_coding synonymous_variant LOW 2019C>T Ala673Ala
M0141600 HKPPINGH_00152 154069 3 Vaginal 0.60 protein_coding synonymous_variant LOW 2010T>A Pro670Pro
M0141601 HKPPINGH_00152 154182 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1897A>G Thr633Ala
M0141602 HKPPINGH_00152 154213 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1866A>C Gly622Gly
M0141603 HKPPINGH_00152 154216 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1863G>A Lys621Lys
M0141604 HKPPINGH_00152 154252 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1827C>T Gly609Gly
M0141605 HKPPINGH_00152 154306 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1773T>G Thr591Thr
M0141606 HKPPINGH_00152 154336 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1743A>G Glu581Glu
M0141607 HKPPINGH_00152 155679 3 Vaginal 0.60 protein_coding missense_variant MODERATE 400A>G Ile134Val
M0141608 HKPPINGH_00152 155767 3 Vaginal 0.60 protein_coding synonymous_variant LOW 312G>A Thr104Thr
M0141609 HKPPINGH_00152 155899 3 Vaginal 0.60 protein_coding synonymous_variant LOW 180G>A Ser60Ser
M0141610 HKPPINGH_00152 155977 3 Vaginal 0.60 protein_coding synonymous_variant LOW 102A>G Leu34Leu
M0141611 HKPPINGH_00152 155980 3 Vaginal 0.60 protein_coding synonymous_variant LOW 99A>T Gly33Gly
M0141612 HKPPINGH_00154 158005 3 Vaginal 0.60 protein_coding synonymous_variant LOW 972G>A Gln324Gln
M0141613 HKPPINGH_00154 158043 3 Vaginal 0.60 protein_coding missense_variant MODERATE 934A>T Thr312Ser
M0141614 HKPPINGH_00154 158212 3 Vaginal 0.60 protein_coding synonymous_variant LOW 765G>A Glu255Glu
M0141615 HKPPINGH_00154 158653 3 Vaginal 0.60 protein_coding synonymous_variant LOW 324A>G Gln108Gln
M0141616 HKPPINGH_00154 158941 3 Vaginal 0.60 protein_coding synonymous_variant LOW 36C>T Arg12Arg
M0141617 HKPPINGH_00155 159277 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1127G>A Gly376Asp
M0141618 HKPPINGH_00155 159348 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1056T>C Arg352Arg
M0141619 HKPPINGH_00155 159501 3 Vaginal 0.60 protein_coding synonymous_variant LOW 903T>C Thr301Thr
M0141620 HKPPINGH_00155 159519 3 Vaginal 0.60 protein_coding synonymous_variant LOW 885C>T Cys295Cys
M0141621 HKPPINGH_00155 159552 3 Vaginal 0.60 protein_coding synonymous_variant LOW 852G>A Ala284Ala
M0141622 HKPPINGH_00155 159720 3 Vaginal 0.60 protein_coding synonymous_variant LOW 684T>C Asn228Asn
M0141623 HKPPINGH_00155 159726 3 Vaginal 0.60 protein_coding synonymous_variant LOW 678C>T Ile226Ile
M0141624 HKPPINGH_00156 160797 3 Vaginal 0.60 protein_coding synonymous_variant LOW 477T>C Pro159Pro
M0141625 HKPPINGH_00156 160854 3 Vaginal 0.60 protein_coding missense_variant MODERATE 420T>G Asp140Glu
M0141626 HKPPINGH_00156 161073 3 Vaginal 0.60 protein_coding synonymous_variant LOW 201T>C Asp67Asp
M0141627 HKPPINGH_00156 161088 3 Vaginal 0.60 protein_coding synonymous_variant LOW 186G>C Ala62Ala
M0141628 HKPPINGH_00157 161511 3 Vaginal 0.60 protein_coding synonymous_variant LOW 108A>G Val36Val
M0141629 HKPPINGH_00157 161556 3 Vaginal 0.60 protein_coding synonymous_variant LOW 153C>T Cys51Cys
M0141630 HKPPINGH_00157 161634 3 Vaginal 0.60 protein_coding synonymous_variant LOW 231G>A Ser77Ser
M0141631 HKPPINGH_00157 161635 3 Vaginal 0.60 protein_coding missense_variant MODERATE 232T>C Cys78Arg
M0141632 HKPPINGH_00157 162100 3 Vaginal 0.60 protein_coding missense_variant MODERATE 697A>G Lys233Glu
M0141633 HKPPINGH_00158 162402 3 Vaginal 0.60 protein_coding synonymous_variant LOW 66T>C Asp22Asp
M0141634 HKPPINGH_00158 162453 3 Vaginal 0.60 protein_coding synonymous_variant LOW 117T>C Asp39Asp
M0141635 HKPPINGH_00158 162516 3 Vaginal 0.60 protein_coding synonymous_variant LOW 180G>A Lys60Lys
M0141636 HKPPINGH_00158 162720 3 Vaginal 0.60 protein_coding synonymous_variant LOW 384G>A Leu128Leu
M0141637 HKPPINGH_00158 163209 3 Vaginal 0.60 protein_coding synonymous_variant LOW 873A>G Ala291Ala
M0141638 HKPPINGH_00158 163251 3 Vaginal 0.60 protein_coding synonymous_variant LOW 915C>A Arg305Arg
M0141639 HKPPINGH_00158 163425 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1089C>G Ser363Ser
M0141640 HKPPINGH_00158 163434 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1098T>C Arg366Arg
M0141641 HKPPINGH_00158 163449 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1113C>T His371His
M0141642 HKPPINGH_00159 163673 3 Vaginal 0.60 protein_coding synonymous_variant LOW 543A>G Leu181Leu
M0141643 HKPPINGH_00159 163690 3 Vaginal 0.60 protein_coding missense_variant MODERATE 526T>C Ser176Pro
M0141644 HKPPINGH_00155 164304 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -3901C>T None
M0141645 HKPPINGH_00155 164314 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -3911C>T None
M0141646 HKPPINGH_00155 165110 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4707C>T None
M0141647 HKPPINGH_00163 167947 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1101T>C Arg367Arg
M0141648 HKPPINGH_00163 167953 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1095C>A Asp365Glu
M0141649 HKPPINGH_00163 167968 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1080T>C Tyr360Tyr
M0141650 HKPPINGH_00163 168010 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1038G>A Ala346Ala
M0141651 HKPPINGH_00163 168013 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1035A>G Gln345Gln
M0141652 HKPPINGH_00163 168262 3 Vaginal 0.60 protein_coding synonymous_variant LOW 786A>C Ala262Ala
M0141653 HKPPINGH_00163 168568 3 Vaginal 0.60 protein_coding synonymous_variant LOW 480T>C Thr160Thr
M0141654 HKPPINGH_00163 168679 3 Vaginal 0.60 protein_coding synonymous_variant LOW 369C>T Ser123Ser
M0141655 HKPPINGH_00163 168916 3 Vaginal 0.60 protein_coding synonymous_variant LOW 132T>C Asn44Asn
M0141656 HKPPINGH_00163 168961 3 Vaginal 0.60 protein_coding synonymous_variant LOW 87T>C Arg29Arg
M0141657 HKPPINGH_00163 169027 3 Vaginal 0.60 protein_coding synonymous_variant LOW 21T>C Thr7Thr
M0141658 HKPPINGH_00164 169171 3 Vaginal 0.60 protein_coding missense_variant MODERATE 859A>C Thr287Pro
M0141659 HKPPINGH_00164 169436 3 Vaginal 0.60 protein_coding synonymous_variant LOW 594C>T Asn198Asn
M0141660 HKPPINGH_00164 169454 3 Vaginal 0.60 protein_coding synonymous_variant LOW 576G>T Val192Val
M0141661 HKPPINGH_00164 169502 3 Vaginal 0.60 protein_coding synonymous_variant LOW 528A>G Val176Val
M0141662 HKPPINGH_00164 169543 3 Vaginal 0.60 protein_coding synonymous_variant LOW 487A>C Arg163Arg
M0141663 HKPPINGH_00167 172971 3 Vaginal 0.60 protein_coding synonymous_variant LOW 798T>C Gly266Gly
M0141664 HKPPINGH_00167 173043 3 Vaginal 0.60 protein_coding synonymous_variant LOW 870A>G Leu290Leu
M0141665 HKPPINGH_00167 173055 3 Vaginal 0.60 protein_coding synonymous_variant LOW 882C>A Thr294Thr
M0141666 HKPPINGH_00167 173064 3 Vaginal 0.60 protein_coding synonymous_variant LOW 891A>G Gln297Gln
M0141667 HKPPINGH_00167 173070 3 Vaginal 0.60 protein_coding synonymous_variant LOW 897T>C Tyr299Tyr
M0141668 HKPPINGH_00167 173073 3 Vaginal 0.60 protein_coding missense_variant MODERATE 900T>G Asp300Glu
M0141669 HKPPINGH_00167 173076 3 Vaginal 0.60 protein_coding synonymous_variant LOW 903A>T Leu301Leu
M0141670 HKPPINGH_00167 173106 3 Vaginal 0.60 protein_coding synonymous_variant LOW 933A>G Glu311Glu
M0141671 HKPPINGH_00167 173190 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1017C>A Ile339Ile
M0141672 HKPPINGH_00167 173266 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1093A>G Asn365Asp
M0141673 HKPPINGH_00167 173286 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1113A>G Glu371Glu
M0141674 HKPPINGH_00167 173422 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1249A>G Ser417Gly
M0141675 HKPPINGH_00167 173457 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1284T>C Asp428Asp
M0141676 HKPPINGH_00168 173631 3 Vaginal 0.60 protein_coding missense_variant MODERATE 73A>G Ile25Val
M0141677 HKPPINGH_00168 173651 3 Vaginal 0.60 protein_coding synonymous_variant LOW 93C>T Ala31Ala
M0141678 HKPPINGH_00168 173681 3 Vaginal 0.60 protein_coding synonymous_variant LOW 123T>C Asp41Asp
M0141679 HKPPINGH_00168 173684 3 Vaginal 0.60 protein_coding missense_variant MODERATE 126A>C Lys42Asn
M0141680 HKPPINGH_00168 173753 3 Vaginal 0.60 protein_coding synonymous_variant LOW 195A>G Arg65Arg
M0141681 HKPPINGH_00168 173931 3 Vaginal 0.60 protein_coding missense_variant MODERATE 373A>G Thr125Ala
M0141682 HKPPINGH_00168 174521 3 Vaginal 0.60 protein_coding missense_variant MODERATE 963A>C Gln321His
M0141683 HKPPINGH_00168 174523 3 Vaginal 0.60 protein_coding missense_variant MODERATE 965G>A Arg322His
M0141684 HKPPINGH_00168 174525 3 Vaginal 0.60 protein_coding missense_variant MODERATE 967G>A Ala323Thr
M0141685 HKPPINGH_00168 174526 3 Vaginal 0.60 protein_coding missense_variant MODERATE 968C>T Ala323Val
M0141686 HKPPINGH_00168 174527 3 Vaginal 0.60 protein_coding synonymous_variant LOW 969A>G Ala323Ala
M0141687 HKPPINGH_00168 174569 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1011G>A Arg337Arg
M0141688 HKPPINGH_00168 174579 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1021T>C Leu341Leu
M0141689 HKPPINGH_00168 174611 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1053A>C Gly351Gly
M0141690 HKPPINGH_00168 174638 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1080A>T Gly360Gly
M0141691 HKPPINGH_00168 174674 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1116C>T Ser372Ser
M0141692 HKPPINGH_00168 174675 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1117A>G Arg373Gly
M0141693 HKPPINGH_00168 174704 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1146C>T Cys382Cys
M0141694 HKPPINGH_00168 174781 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1223A>C Glu408Ala
M0141695 HKPPINGH_00168 174786 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1228G>A Ala410Thr
M0141696 HKPPINGH_00168 174788 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1230C>T Ala410Ala
M0141697 HKPPINGH_00168 174797 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1239C>T Asn413Asn
M0141698 HKPPINGH_00168 174873 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1315G>A Glu439Lys
M0141699 HKPPINGH_00168 174875 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1317A>G Glu439Glu
M0141700 HKPPINGH_00168 174962 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1404T>C Ser468Ser
M0141701 HKPPINGH_00168 175091 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1533T>C His511His
M0141702 HKPPINGH_00168 175191 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1633A>C Lys545Gln
M0141703 HKPPINGH_00168 175235 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1677G>A Gly559Gly
M0141704 HKPPINGH_00169 176728 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -1036G>A None
M0141705 HKPPINGH_00171 177097 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1960C>T Pro654Ser
M0141706 HKPPINGH_00171 177230 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1827T>G Ser609Ser
M0141707 HKPPINGH_00171 177973 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1084A>G Ile362Val
M0141708 HKPPINGH_00171 177974 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1083T>C Ser361Ser
M0141709 HKPPINGH_00171 177977 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1080A>C Val360Val
M0141710 HKPPINGH_00171 178100 3 Vaginal 0.60 protein_coding synonymous_variant LOW 957A>G Gly319Gly
M0141711 HKPPINGH_00171 178154 3 Vaginal 0.60 protein_coding synonymous_variant LOW 903C>T Ala301Ala
M0141712 HKPPINGH_00171 178292 3 Vaginal 0.60 protein_coding synonymous_variant LOW 765A>G Gln255Gln
M0141713 HKPPINGH_00171 178295 3 Vaginal 0.60 protein_coding synonymous_variant LOW 762C>G Ser254Ser
M0141714 HKPPINGH_00171 178775 3 Vaginal 0.60 protein_coding synonymous_variant LOW 282T>C Ser94Ser
M0141715 HKPPINGH_00171 178918 3 Vaginal 0.60 protein_coding missense_variant MODERATE 139G>A Val47Met
M0141716 HKPPINGH_00171 179033 3 Vaginal 0.60 protein_coding synonymous_variant LOW 24C>T Gly8Gly
M0141717 HKPPINGH_00172 179088 3 Vaginal 0.60 protein_coding synonymous_variant LOW 567C>T Tyr189Tyr
M0141718 HKPPINGH_00172 179202 3 Vaginal 0.60 protein_coding synonymous_variant LOW 453C>T Val151Val
M0141719 HKPPINGH_00172 179229 3 Vaginal 0.60 protein_coding synonymous_variant LOW 426G>C Ala142Ala
M0141720 HKPPINGH_00172 179256 3 Vaginal 0.60 protein_coding synonymous_variant LOW 399G>A Gln133Gln
M0141721 HKPPINGH_00172 179271 3 Vaginal 0.60 protein_coding synonymous_variant LOW 384A>G Ala128Ala
M0141722 HKPPINGH_00172 179283 3 Vaginal 0.60 protein_coding synonymous_variant LOW 372G>T Val124Val
M0141723 HKPPINGH_00172 179334 3 Vaginal 0.60 protein_coding synonymous_variant LOW 321A>G Thr107Thr
M0141724 HKPPINGH_00172 179340 3 Vaginal 0.60 protein_coding synonymous_variant LOW 315A>C Ser105Ser
M0141725 HKPPINGH_00172 179390 3 Vaginal 0.60 protein_coding missense_variant MODERATE 265C>A Leu89Ile
M0141726 HKPPINGH_00172 179427 3 Vaginal 0.60 protein_coding synonymous_variant LOW 228T>C Asp76Asp
M0141727 HKPPINGH_00173 179711 3 Vaginal 0.60 protein_coding synonymous_variant LOW 591G>A Gln197Gln
M0141728 HKPPINGH_00173 180049 3 Vaginal 0.60 protein_coding missense_variant MODERATE 253A>G Thr85Ala
M0141729 HKPPINGH_00174 180477 3 Vaginal 0.60 protein_coding synonymous_variant LOW 274C>T Leu92Leu
M0141730 HKPPINGH_00174 180488 3 Vaginal 0.60 protein_coding missense_variant MODERATE 263C>T Ala88Val
M0141731 HKPPINGH_00174 180514 3 Vaginal 0.60 protein_coding synonymous_variant LOW 237T>C Ser79Ser
M0141732 HKPPINGH_00174 180585 3 Vaginal 0.60 protein_coding missense_variant MODERATE 166T>C Phe56Leu
M0141733 HKPPINGH_00174 180600 3 Vaginal 0.60 protein_coding missense_variant MODERATE 151T>C Phe51Leu
M0141734 HKPPINGH_00170 181193 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4750T>C None
M0141735 HKPPINGH_00170 181278 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4835T>C None
M0141736 HKPPINGH_00177 182767 3 Vaginal 0.60 protein_coding synonymous_variant LOW 249C>T Arg83Arg
M0141737 HKPPINGH_00177 182896 3 Vaginal 0.60 protein_coding synonymous_variant LOW 120C>T Val40Val
M0141738 HKPPINGH_00177 182905 3 Vaginal 0.60 protein_coding synonymous_variant LOW 111A>G Leu37Leu
M0141739 HKPPINGH_00179 183589 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1179T>G Ser393Ser
M0141740 HKPPINGH_00179 183637 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1131T>G Pro377Pro
M0141741 HKPPINGH_00179 184006 3 Vaginal 0.60 protein_coding synonymous_variant LOW 762T>C Thr254Thr
M0141742 HKPPINGH_00179 184009 3 Vaginal 0.60 protein_coding synonymous_variant LOW 759T>C Pro253Pro
M0141743 HKPPINGH_00179 184060 3 Vaginal 0.60 protein_coding synonymous_variant LOW 708G>A Glu236Glu
M0141744 HKPPINGH_00179 184075 3 Vaginal 0.60 protein_coding synonymous_variant LOW 693G>A Thr231Thr
M0141745 HKPPINGH_00179 184081 3 Vaginal 0.60 protein_coding synonymous_variant LOW 687A>G Val229Val
M0141746 HKPPINGH_00179 184099 3 Vaginal 0.60 protein_coding synonymous_variant LOW 669G>A Ala223Ala
M0141747 HKPPINGH_00179 184108 3 Vaginal 0.60 protein_coding synonymous_variant LOW 660C>T Arg220Arg
M0141748 HKPPINGH_00179 184114 3 Vaginal 0.60 protein_coding synonymous_variant LOW 654T>C Val218Val
M0141749 HKPPINGH_00179 184117 3 Vaginal 0.60 protein_coding synonymous_variant LOW 651T>C Ser217Ser
M0141750 HKPPINGH_00179 184150 3 Vaginal 0.60 protein_coding synonymous_variant LOW 618C>G Ser206Ser
M0141751 HKPPINGH_00179 184159 3 Vaginal 0.60 protein_coding synonymous_variant LOW 609T>C Gly203Gly
M0141752 HKPPINGH_00179 184186 3 Vaginal 0.60 protein_coding missense_variant MODERATE 582C>G Asn194Lys
M0141753 HKPPINGH_00179 184239 3 Vaginal 0.60 protein_coding missense_variant MODERATE 529A>G Thr177Ala
M0141754 HKPPINGH_00179 184399 3 Vaginal 0.60 protein_coding synonymous_variant LOW 369C>T Gly123Gly
M0141755 HKPPINGH_00179 184429 3 Vaginal 0.60 protein_coding synonymous_variant LOW 339G>A Ala113Ala
M0141756 HKPPINGH_00179 184444 3 Vaginal 0.60 protein_coding synonymous_variant LOW 324G>A Leu108Leu
M0141757 HKPPINGH_00179 184695 3 Vaginal 0.60 protein_coding missense_variant MODERATE 73G>T Ala25Ser
M0141758 HKPPINGH_00180 184943 3 Vaginal 0.60 protein_coding synonymous_variant LOW 627G>A Val209Val
M0141759 HKPPINGH_00180 185000 3 Vaginal 0.60 protein_coding synonymous_variant LOW 570C>T Thr190Thr
M0141760 HKPPINGH_00180 185006 3 Vaginal 0.60 protein_coding synonymous_variant LOW 564T>A Ala188Ala
M0141761 HKPPINGH_00180 185033 3 Vaginal 0.60 protein_coding synonymous_variant LOW 537A>T Arg179Arg
M0141762 HKPPINGH_00180 185039 3 Vaginal 0.60 protein_coding synonymous_variant LOW 531C>T Ala177Ala
M0141763 HKPPINGH_00180 185057 3 Vaginal 0.60 protein_coding synonymous_variant LOW 513C>T Leu171Leu
M0141764 HKPPINGH_00180 185069 3 Vaginal 0.60 protein_coding synonymous_variant LOW 501G>A Gln167Gln
M0141765 HKPPINGH_00180 185243 3 Vaginal 0.60 protein_coding synonymous_variant LOW 327T>C His109His
M0141766 HKPPINGH_00180 185252 3 Vaginal 0.60 protein_coding synonymous_variant LOW 318A>G Glu106Glu
M0141767 HKPPINGH_00180 185279 3 Vaginal 0.60 protein_coding synonymous_variant LOW 291G>A Val97Val
M0141768 HKPPINGH_00180 185374 3 Vaginal 0.60 protein_coding missense_variant MODERATE 196C>A Arg66Ser
M0141769 HKPPINGH_00174 185591 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4841T>C None
M0141770 HKPPINGH_00174 185655 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4905C>T None
M0141771 HKPPINGH_00181 185769 3 Vaginal 0.60 protein_coding synonymous_variant LOW 1059A>G Gly353Gly
M0141772 HKPPINGH_00181 186066 3 Vaginal 0.60 protein_coding synonymous_variant LOW 762T>C Arg254Arg
M0141773 HKPPINGH_00181 186156 3 Vaginal 0.60 protein_coding synonymous_variant LOW 672A>T Ile224Ile
M0141774 HKPPINGH_00181 186160 3 Vaginal 0.60 protein_coding missense_variant MODERATE 668A>T Asp223Val
M0141775 HKPPINGH_00181 186186 3 Vaginal 0.60 protein_coding synonymous_variant LOW 642C>G Ala214Ala
M0141776 HKPPINGH_00181 186192 3 Vaginal 0.60 protein_coding synonymous_variant LOW 636T>C Ala212Ala
M0141777 HKPPINGH_00181 186195 3 Vaginal 0.60 protein_coding synonymous_variant LOW 633G>A Leu211Leu
M0141778 HKPPINGH_00181 186270 3 Vaginal 0.60 protein_coding synonymous_variant LOW 558G>A Glu186Glu
M0141779 HKPPINGH_00181 186274 3 Vaginal 0.60 protein_coding missense_variant MODERATE 554A>G Asn185Ser
M0141780 HKPPINGH_00181 186414 3 Vaginal 0.60 protein_coding synonymous_variant LOW 414G>T Arg138Arg
M0141781 HKPPINGH_00176 186863 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4294T>G None
M0141782 HKPPINGH_00176 186982 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4413C>T None
M0141783 HKPPINGH_00176 187528 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4959G>T None
M0141784 HKPPINGH_00176 187531 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4962A>G None
M0141785 HKPPINGH_00183 187565 3 Vaginal 0.60 protein_coding synonymous_variant LOW 12C>T Ala4Ala
M0141786 HKPPINGH_00183 187604 3 Vaginal 0.60 protein_coding synonymous_variant LOW 51A>G Glu17Glu
M0141787 HKPPINGH_00183 188327 3 Vaginal 0.60 protein_coding missense_variant MODERATE 774T>A Asp258Glu
M0141788 HKPPINGH_00184 188534 3 Vaginal 0.60 protein_coding synonymous_variant LOW 66A>C Val22Val
M0141789 HKPPINGH_00184 188566 3 Vaginal 0.60 protein_coding missense_variant MODERATE 98A>G His33Arg
M0141790 HKPPINGH_00184 188974 3 Vaginal 0.60 protein_coding missense_variant MODERATE 506T>C Leu169Ser
M0141791 HKPPINGH_00179 189077 3 Vaginal 0.60 protein_coding upstream_gene_variant MODIFIER -4310A>C None
M0141792 HKPPINGH_00185 189488 3 Vaginal 0.60 protein_coding missense_variant MODERATE 1060A>G Asn354Asp
M0141793 HKPPINGH_00185 189816 3 Vaginal 0.60 protein_coding synonymous_variant LOW 732C>G Thr244Thr
M0141794 HKPPINGH_00185 190151 3 Vaginal 0.60 protein_coding missense_variant MODERATE 397T>G Ser133Ala
M0141795 HKPPINGH_00185 190489 3 Vaginal 0.60 protein_coding missense_variant MODERATE 59G>T Cys20Phe
M0141796 HKPPINGH_00186 190812 3 Vaginal 0.60 protein_coding synonymous_variant LOW 126T>C Ser42Ser
M0141797 HKPPINGH_00186 191307 3 Vaginal 0.60 protein_coding synonymous_variant LOW 621T>C His207His
M0141798 HKPPINGH_00186 191317 3 Vaginal 0.60 protein_coding missense_variant MODERATE 631A>G Asn211Asp
M0141799 HKPPINGH_00186 191334 3 Vaginal 0.60 protein_coding missense_variant MODERATE 648T>A Asp216Glu
M0141800 HKPPINGH_00186 191343 3 Vaginal 0.60 protein_coding synonymous_variant LOW 657A>G Thr219Thr
M0141801 HKPPINGH_00186 191452 3 Vaginal 0.60 protein_coding missense_variant MODERATE 766T>C Ser256Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
HKPPINGH_00057 QPR42051.1|GT2 98.4 2e-283 1 380 1 1
HKPPINGH_00058 QPR42052.1|GT2 96.9 4.85e-255 1 354 1 1
HKPPINGH_00059 QPR42053.1|GT2 99.2 8.96e-271 1 371 1 1
HKPPINGH_00157 QPR42144.1|GT2 98.1 1.65e-195 1 266 1 1
HKPPINGH_00158 QPR42145.1|GT2 99.5 1.03e-302 1 409 1 1
HKPPINGH_00160 QPR42147.1|GT2 100 2.84e-167 1 226 1 1
HKPPINGH_00172 QPR42159.1|GH23 100 3.8e-143 1 195 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term