Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3399
  Reference Plasmid   MGYG000303762__MGYG000303762_3
  Reference Plasmid Size   165382
  Reference Plasmid GC Content   0.28
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0141802 GJPHGHHL_00052 49624 3 Vaginal 1.00 protein_coding synonymous_variant LOW 507A>T Gly169Gly
M0141803 GJPHGHHL_00043 49696 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -4694C>T None
M0141804 GJPHGHHL_00043 49707 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -4705T>A None
M0141805 GJPHGHHL_00053 50513 3 Vaginal 1.00 protein_coding synonymous_variant LOW 801A>G Ala267Ala
M0141806 GJPHGHHL_00053 50741 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1029A>T Ala343Ala
M0141807 GJPHGHHL_00053 50774 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1062T>C Asp354Asp
M0141808 GJPHGHHL_00053 50777 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1065C>T Ser355Ser
M0141809 GJPHGHHL_00054 51180 3 Vaginal 1.00 protein_coding missense_variant MODERATE 185T>C Leu62Ser
M0141810 GJPHGHHL_00054 51415 3 Vaginal 1.00 protein_coding synonymous_variant LOW 420A>G Lys140Lys
M0141811 GJPHGHHL_00054 52237 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1242C>T His414His
M0141812 GJPHGHHL_00054 52243 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1248A>T Ile416Ile
M0141813 GJPHGHHL_00054 52255 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1260G>T Val420Val
M0141814 GJPHGHHL_00055 52617 3 Vaginal 1.00 protein_coding synonymous_variant LOW 195T>C Tyr65Tyr
M0141815 GJPHGHHL_00055 52723 3 Vaginal 1.00 protein_coding missense_variant MODERATE 301G>A Val101Ile
M0141816 GJPHGHHL_00056 53594 3 Vaginal 1.00 protein_coding synonymous_variant LOW 723A>G Leu241Leu
M0141817 GJPHGHHL_00057 53809 3 Vaginal 1.00 protein_coding synonymous_variant LOW 84G>A Leu28Leu
M0141818 GJPHGHHL_00057 53842 3 Vaginal 1.00 protein_coding synonymous_variant LOW 117A>C Val39Val
M0141819 GJPHGHHL_00057 53852 3 Vaginal 1.00 protein_coding synonymous_variant LOW 127T>C Leu43Leu
M0141820 GJPHGHHL_00057 53863 3 Vaginal 1.00 protein_coding synonymous_variant LOW 138C>T Asn46Asn
M0141821 GJPHGHHL_00057 53935 3 Vaginal 1.00 protein_coding synonymous_variant LOW 210G>A Lys70Lys
M0141822 GJPHGHHL_00057 54025 3 Vaginal 1.00 protein_coding synonymous_variant LOW 300C>T Thr100Thr
M0141823 GJPHGHHL_00057 54370 3 Vaginal 1.00 protein_coding synonymous_variant LOW 645C>T Gly215Gly
M0141824 GJPHGHHL_00057 54400 3 Vaginal 1.00 protein_coding synonymous_variant LOW 675G>A Glu225Glu
M0141825 GJPHGHHL_00057 54455 3 Vaginal 1.00 protein_coding missense_variant MODERATE 730A>T Ile244Leu
M0141826 GJPHGHHL_00058 54596 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -200T>G None
M0141827 GJPHGHHL_00058 54632 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -164G>A None
M0141828 GJPHGHHL_00066 66514 3 Vaginal 1.00 protein_coding missense_variant MODERATE 145G>A Val49Ile
M0141829 GJPHGHHL_00066 67236 3 Vaginal 1.00 protein_coding synonymous_variant LOW 867T>C Asn289Asn
M0141830 GJPHGHHL_00066 67363 3 Vaginal 1.00 protein_coding missense_variant MODERATE 994A>G Lys332Glu
M0141831 GJPHGHHL_00066 67371 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1002A>G Gly334Gly
M0141832 GJPHGHHL_00067 67830 3 Vaginal 1.00 protein_coding synonymous_variant LOW 360T>C Ile120Ile
M0141833 GJPHGHHL_00067 67983 3 Vaginal 1.00 protein_coding synonymous_variant LOW 513T>C Asp171Asp
M0141834 GJPHGHHL_00067 68346 3 Vaginal 1.00 protein_coding synonymous_variant LOW 876C>T Asp292Asp
M0141835 GJPHGHHL_00067 68590 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1120A>G Ile374Val
M0141836 GJPHGHHL_00067 68911 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1441A>G Ser481Gly
M0141837 GJPHGHHL_00068 69118 3 Vaginal 1.00 protein_coding synonymous_variant LOW 168T>G Gly56Gly
M0141838 GJPHGHHL_00068 69121 3 Vaginal 1.00 protein_coding synonymous_variant LOW 171A>T Thr57Thr
M0141839 GJPHGHHL_00068 69179 3 Vaginal 1.00 protein_coding synonymous_variant LOW 229T>C Leu77Leu
M0141840 GJPHGHHL_00068 69815 3 Vaginal 1.00 protein_coding missense_variant MODERATE 865A>G Met289Val
M0141841 GJPHGHHL_00069 70252 3 Vaginal 1.00 protein_coding synonymous_variant LOW 93G>A Leu31Leu
M0141842 GJPHGHHL_00069 70651 3 Vaginal 1.00 protein_coding synonymous_variant LOW 492T>A Ala164Ala
M0141843 GJPHGHHL_00069 70816 3 Vaginal 1.00 protein_coding synonymous_variant LOW 657G>A Glu219Glu
M0141844 GJPHGHHL_00069 70886 3 Vaginal 1.00 protein_coding missense_variant MODERATE 727A>C Ile243Leu
M0141845 GJPHGHHL_00070 71519 3 Vaginal 1.00 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0141846 GJPHGHHL_00073 74114 3 Vaginal 1.00 protein_coding synonymous_variant LOW 747T>C Phe249Phe
M0141847 GJPHGHHL_00073 74138 3 Vaginal 1.00 protein_coding synonymous_variant LOW 723T>C Asn241Asn
M0141848 GJPHGHHL_00073 74498 3 Vaginal 1.00 protein_coding synonymous_variant LOW 363C>T Tyr121Tyr
M0141849 GJPHGHHL_00073 74618 3 Vaginal 1.00 protein_coding synonymous_variant LOW 243T>C His81His
M0141850 GJPHGHHL_00073 74642 3 Vaginal 1.00 protein_coding synonymous_variant LOW 219C>A Val73Val
M0141851 GJPHGHHL_00072 75038 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -1298G>A None
M0141852 GJPHGHHL_00072 75164 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -1424A>C None
M0141853 GJPHGHHL_00072 75199 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -1459T>A None
M0141854 GJPHGHHL_00072 75201 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -1461C>G None
M0141855 GJPHGHHL_00072 75216 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -1476A>G None
M0141856 GJPHGHHL_00072 75236 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -1496A>G None
M0141857 GJPHGHHL_00074 75325 3 Vaginal 1.00 protein_coding synonymous_variant LOW 24T>A Gly8Gly
M0141858 GJPHGHHL_00074 75331 3 Vaginal 1.00 protein_coding synonymous_variant LOW 30C>T Asn10Asn
M0141859 GJPHGHHL_00074 75334 3 Vaginal 1.00 protein_coding missense_variant MODERATE 33T>A His11Gln
M0141860 GJPHGHHL_00074 75335 3 Vaginal 1.00 protein_coding missense_variant MODERATE 34C>A Gln12Lys
M0141861 GJPHGHHL_00074 75394 3 Vaginal 1.00 protein_coding synonymous_variant LOW 93A>G Leu31Leu
M0141862 GJPHGHHL_00074 75976 3 Vaginal 1.00 protein_coding synonymous_variant LOW 675A>G Gly225Gly
M0141863 GJPHGHHL_00075 76290 3 Vaginal 1.00 protein_coding missense_variant MODERATE 115G>A Ala39Thr
M0141864 GJPHGHHL_00075 76423 3 Vaginal 1.00 protein_coding missense_variant MODERATE 248T>C Ile83Thr
M0141865 GJPHGHHL_00075 76684 3 Vaginal 1.00 protein_coding missense_variant MODERATE 509A>G Lys170Arg
M0141866 GJPHGHHL_00075 76710 3 Vaginal 1.00 protein_coding synonymous_variant LOW 535T>C Leu179Leu
M0141867 GJPHGHHL_00075 76724 3 Vaginal 1.00 protein_coding synonymous_variant LOW 549A>G Val183Val
M0141868 GJPHGHHL_00075 76781 3 Vaginal 1.00 protein_coding synonymous_variant LOW 606G>A Lys202Lys
M0141869 GJPHGHHL_00075 77054 3 Vaginal 1.00 protein_coding missense_variant MODERATE 879T>G Asn293Lys
M0141870 GJPHGHHL_00075 77159 3 Vaginal 1.00 protein_coding synonymous_variant LOW 984A>G Lys328Lys
M0141871 GJPHGHHL_00075 77375 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1200T>C Tyr400Tyr
M0141872 GJPHGHHL_00075 77411 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1236T>A Ile412Ile
M0141873 GJPHGHHL_00075 77414 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1239C>T Asn413Asn
M0141874 GJPHGHHL_00075 77417 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1242T>C Asn414Asn
M0141875 GJPHGHHL_00075 77522 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1347G>A Lys449Lys
M0141876 GJPHGHHL_00076 78058 3 Vaginal 1.00 protein_coding synonymous_variant LOW 504A>G Val168Val
M0141877 GJPHGHHL_00072 78515 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -4775C>T None
M0141878 GJPHGHHL_00081 84048 3 Vaginal 1.00 protein_coding missense_variant MODERATE 204G>A Met68Ile
M0141879 GJPHGHHL_00085 89033 3 Vaginal 1.00 protein_coding missense_variant MODERATE 911A>T His304Leu
M0141880 GJPHGHHL_00086 89544 3 Vaginal 1.00 protein_coding synonymous_variant LOW 333T>C Phe111Phe
M0141881 GJPHGHHL_00086 89628 3 Vaginal 1.00 protein_coding synonymous_variant LOW 417A>G Leu139Leu
M0141882 GJPHGHHL_00086 89670 3 Vaginal 1.00 protein_coding synonymous_variant LOW 459T>C Ser153Ser
M0141883 GJPHGHHL_00086 89673 3 Vaginal 1.00 protein_coding synonymous_variant LOW 462G>A Pro154Pro
M0141884 GJPHGHHL_00086 89731 3 Vaginal 1.00 protein_coding synonymous_variant LOW 520T>C Leu174Leu
M0141885 GJPHGHHL_00086 89817 3 Vaginal 1.00 protein_coding synonymous_variant LOW 606A>T Gly202Gly
M0141886 GJPHGHHL_00086 89831 3 Vaginal 1.00 protein_coding missense_variant MODERATE 620G>A Gly207Glu
M0141887 GJPHGHHL_00086 89832 3 Vaginal 1.00 protein_coding synonymous_variant LOW 621G>A Gly207Gly
M0141888 GJPHGHHL_00086 89919 3 Vaginal 1.00 protein_coding synonymous_variant LOW 708C>T Tyr236Tyr
M0141889 GJPHGHHL_00086 89934 3 Vaginal 1.00 protein_coding synonymous_variant LOW 723A>G Lys241Lys
M0141890 GJPHGHHL_00086 90051 3 Vaginal 1.00 protein_coding synonymous_variant LOW 840T>C Tyr280Tyr
M0141891 GJPHGHHL_00086 90114 3 Vaginal 1.00 protein_coding synonymous_variant LOW 903T>C Tyr301Tyr
M0141892 GJPHGHHL_00086 90327 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1116T>A Ala372Ala
M0141893 GJPHGHHL_00087 90647 3 Vaginal 1.00 protein_coding missense_variant MODERATE 46A>G Ile16Val
M0141894 GJPHGHHL_00087 90670 3 Vaginal 1.00 protein_coding synonymous_variant LOW 69A>G Pro23Pro
M0141895 GJPHGHHL_00087 90781 3 Vaginal 1.00 protein_coding synonymous_variant LOW 180T>C Phe60Phe
M0141896 GJPHGHHL_00087 90815 3 Vaginal 1.00 protein_coding missense_variant MODERATE 214G>A Val72Ile
M0141897 GJPHGHHL_00087 90994 3 Vaginal 1.00 protein_coding synonymous_variant LOW 393A>G Lys131Lys
M0141898 GJPHGHHL_00087 91015 3 Vaginal 1.00 protein_coding synonymous_variant LOW 414T>C Asp138Asp
M0141899 GJPHGHHL_00087 91327 3 Vaginal 1.00 protein_coding synonymous_variant LOW 726A>T Pro242Pro
M0141900 GJPHGHHL_00088 91721 3 Vaginal 1.00 protein_coding synonymous_variant LOW 75A>G Lys25Lys
M0141901 GJPHGHHL_00088 91730 3 Vaginal 1.00 protein_coding synonymous_variant LOW 84T>A Ala28Ala
M0141902 GJPHGHHL_00088 91790 3 Vaginal 1.00 protein_coding synonymous_variant LOW 144C>A Ala48Ala
M0141903 GJPHGHHL_00088 91799 3 Vaginal 1.00 protein_coding synonymous_variant LOW 153G>T Gly51Gly
M0141904 GJPHGHHL_00088 91863 3 Vaginal 1.00 protein_coding missense_variant MODERATE 217A>G Asn73Asp
M0141905 GJPHGHHL_00088 91880 3 Vaginal 1.00 protein_coding synonymous_variant LOW 234A>G Leu78Leu
M0141906 GJPHGHHL_00088 91913 3 Vaginal 1.00 protein_coding synonymous_variant LOW 267G>A Gly89Gly
M0141907 GJPHGHHL_00088 91967 3 Vaginal 1.00 protein_coding synonymous_variant LOW 321A>G Lys107Lys
M0141908 GJPHGHHL_00088 92093 3 Vaginal 1.00 protein_coding synonymous_variant LOW 447C>T Asn149Asn
M0141909 GJPHGHHL_00088 92120 3 Vaginal 1.00 protein_coding synonymous_variant LOW 474A>T Pro158Pro
M0141910 GJPHGHHL_00088 92150 3 Vaginal 1.00 protein_coding synonymous_variant LOW 504C>T Ala168Ala
M0141911 GJPHGHHL_00088 92159 3 Vaginal 1.00 protein_coding synonymous_variant LOW 513C>T Ser171Ser
M0141912 GJPHGHHL_00088 92168 3 Vaginal 1.00 protein_coding synonymous_variant LOW 522T>C Asn174Asn
M0141913 GJPHGHHL_00088 92192 3 Vaginal 1.00 protein_coding synonymous_variant LOW 546C>T His182His
M0141914 GJPHGHHL_00089 92618 3 Vaginal 1.00 protein_coding synonymous_variant LOW 159A>T Thr53Thr
M0141915 GJPHGHHL_00089 92675 3 Vaginal 1.00 protein_coding synonymous_variant LOW 216T>C Ile72Ile
M0141916 GJPHGHHL_00089 92693 3 Vaginal 1.00 protein_coding synonymous_variant LOW 234C>T Gly78Gly
M0141917 GJPHGHHL_00089 92777 3 Vaginal 1.00 protein_coding synonymous_variant LOW 318C>T Phe106Phe
M0141918 GJPHGHHL_00089 93182 3 Vaginal 1.00 protein_coding synonymous_variant LOW 723G>A Gly241Gly
M0141919 GJPHGHHL_00089 93191 3 Vaginal 1.00 protein_coding synonymous_variant LOW 732A>G Leu244Leu
M0141920 GJPHGHHL_00089 93221 3 Vaginal 1.00 protein_coding synonymous_variant LOW 762G>A Leu254Leu
M0141921 GJPHGHHL_00089 93407 3 Vaginal 1.00 protein_coding synonymous_variant LOW 948A>T Gly316Gly
M0141922 GJPHGHHL_00089 93614 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1155A>G Val385Val
M0141923 GJPHGHHL_00089 93638 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1179C>T Gly393Gly
M0141924 GJPHGHHL_00089 93746 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1287T>C Tyr429Tyr
M0141925 GJPHGHHL_00090 93930 3 Vaginal 1.00 protein_coding synonymous_variant LOW 63T>C Tyr21Tyr
M0141926 GJPHGHHL_00090 94047 3 Vaginal 1.00 protein_coding synonymous_variant LOW 180C>T Asn60Asn
M0141927 GJPHGHHL_00090 94059 3 Vaginal 1.00 protein_coding synonymous_variant LOW 192G>A Gly64Gly
M0141928 GJPHGHHL_00090 94098 3 Vaginal 1.00 protein_coding synonymous_variant LOW 231C>T Asn77Asn
M0141929 GJPHGHHL_00090 94137 3 Vaginal 1.00 protein_coding synonymous_variant LOW 270A>T Ser90Ser
M0141930 GJPHGHHL_00090 94164 3 Vaginal 1.00 protein_coding synonymous_variant LOW 297A>G Ser99Ser
M0141931 GJPHGHHL_00090 94183 3 Vaginal 1.00 protein_coding synonymous_variant LOW 316T>C Leu106Leu
M0141932 GJPHGHHL_00090 94361 3 Vaginal 1.00 protein_coding missense_variant MODERATE 494A>G Glu165Gly
M0141933 GJPHGHHL_00093 98753 3 Vaginal 1.00 protein_coding missense_variant MODERATE 414A>T Lys138Asn
M0141934 GJPHGHHL_00093 98795 3 Vaginal 1.00 protein_coding synonymous_variant LOW 456G>C Thr152Thr
M0141935 GJPHGHHL_00094 99438 3 Vaginal 1.00 protein_coding synonymous_variant LOW 291G>A Gly97Gly
M0141936 GJPHGHHL_00095 100162 3 Vaginal 1.00 protein_coding synonymous_variant LOW 234T>C Cys78Cys
M0141937 GJPHGHHL_00095 100294 3 Vaginal 1.00 protein_coding synonymous_variant LOW 366A>C Ile122Ile
M0141938 GJPHGHHL_00095 100301 3 Vaginal 1.00 protein_coding synonymous_variant LOW 373T>C Leu125Leu
M0141939 GJPHGHHL_00097 101768 3 Vaginal 1.00 protein_coding missense_variant MODERATE 739A>G Ile247Val
M0141940 GJPHGHHL_00097 101798 3 Vaginal 1.00 protein_coding missense_variant MODERATE 709A>G Lys237Glu
M0141941 GJPHGHHL_00097 101989 3 Vaginal 1.00 protein_coding missense_variant MODERATE 518G>A Arg173Lys
M0141942 GJPHGHHL_00097 101997 3 Vaginal 1.00 protein_coding synonymous_variant LOW 510G>A Ser170Ser
M0141943 GJPHGHHL_00097 102335 3 Vaginal 1.00 protein_coding missense_variant MODERATE 172A>G Asn58Asp
M0141944 GJPHGHHL_00097 102384 3 Vaginal 1.00 protein_coding synonymous_variant LOW 123C>T Val41Val
M0141945 GJPHGHHL_00097 102462 3 Vaginal 1.00 protein_coding synonymous_variant LOW 45C>T Val15Val
M0141946 GJPHGHHL_00097 102471 3 Vaginal 1.00 protein_coding synonymous_variant LOW 36A>G Ala12Ala
M0141947 GJPHGHHL_00097 102477 3 Vaginal 1.00 protein_coding synonymous_variant LOW 30C>A Pro10Pro
M0141948 GJPHGHHL_00099 104088 3 Vaginal 1.00 protein_coding synonymous_variant LOW 939T>C Phe313Phe
M0141949 GJPHGHHL_00099 104295 3 Vaginal 1.00 protein_coding synonymous_variant LOW 732C>T Ile244Ile
M0141950 GJPHGHHL_00099 104298 3 Vaginal 1.00 protein_coding synonymous_variant LOW 729T>A Gly243Gly
M0141951 GJPHGHHL_00099 104331 3 Vaginal 1.00 protein_coding synonymous_variant LOW 696T>A Thr232Thr
M0141952 GJPHGHHL_00099 104335 3 Vaginal 1.00 protein_coding missense_variant MODERATE 692T>C Leu231Pro
M0141953 GJPHGHHL_00099 104415 3 Vaginal 1.00 protein_coding missense_variant MODERATE 612A>G Ile204Met
M0141954 GJPHGHHL_00099 104646 3 Vaginal 1.00 protein_coding synonymous_variant LOW 381T>C Phe127Phe
M0141955 GJPHGHHL_00099 104714 3 Vaginal 1.00 protein_coding missense_variant MODERATE 313A>G Ile105Val
M0141956 GJPHGHHL_00100 105447 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1215T>C Asp405Asp
M0141957 GJPHGHHL_00100 105459 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1203A>G Leu401Leu
M0141958 GJPHGHHL_00100 105729 3 Vaginal 1.00 protein_coding synonymous_variant LOW 933G>A Leu311Leu
M0141959 GJPHGHHL_00100 105783 3 Vaginal 1.00 protein_coding synonymous_variant LOW 879T>C Asn293Asn
M0141960 GJPHGHHL_00100 105915 3 Vaginal 1.00 protein_coding synonymous_variant LOW 747C>T Asn249Asn
M0141961 GJPHGHHL_00100 106146 3 Vaginal 1.00 protein_coding synonymous_variant LOW 516A>G Lys172Lys
M0141962 GJPHGHHL_00100 106155 3 Vaginal 1.00 protein_coding synonymous_variant LOW 507T>C Asp169Asp
M0141963 GJPHGHHL_00100 106317 3 Vaginal 1.00 protein_coding synonymous_variant LOW 345G>A Val115Val
M0141964 GJPHGHHL_00100 106319 3 Vaginal 1.00 protein_coding missense_variant MODERATE 343G>A Val115Met
M0141965 GJPHGHHL_00101 106871 3 Vaginal 1.00 protein_coding missense_variant MODERATE 296A>G Glu99Gly
M0141966 GJPHGHHL_00101 106873 3 Vaginal 1.00 protein_coding synonymous_variant LOW 294T>C Cys98Cys
M0141967 GJPHGHHL_00102 107558 3 Vaginal 1.00 protein_coding synonymous_variant LOW 162C>T Phe54Phe
M0141968 GJPHGHHL_00102 107621 3 Vaginal 1.00 protein_coding synonymous_variant LOW 99G>A Lys33Lys
M0141969 GJPHGHHL_00103 107874 3 Vaginal 1.00 protein_coding missense_variant MODERATE 58G>A Asp20Asn
M0141970 GJPHGHHL_00103 108122 3 Vaginal 1.00 protein_coding synonymous_variant LOW 306A>G Leu102Leu
M0141971 GJPHGHHL_00103 108155 3 Vaginal 1.00 protein_coding synonymous_variant LOW 339T>C Tyr113Tyr
M0141972 GJPHGHHL_00103 108683 3 Vaginal 1.00 protein_coding synonymous_variant LOW 867A>G Leu289Leu
M0141973 GJPHGHHL_00104 109148 3 Vaginal 1.00 protein_coding synonymous_variant LOW 231C>T Ile77Ile
M0141974 GJPHGHHL_00104 109215 3 Vaginal 1.00 protein_coding missense_variant MODERATE 298G>A Val100Met
M0141975 GJPHGHHL_00104 109216 3 Vaginal 1.00 protein_coding missense_variant MODERATE 299T>G Val100Gly
M0141976 GJPHGHHL_00104 109262 3 Vaginal 1.00 protein_coding synonymous_variant LOW 345T>C Asn115Asn
M0141977 GJPHGHHL_00104 109313 3 Vaginal 1.00 protein_coding synonymous_variant LOW 396G>A Lys132Lys
M0141978 GJPHGHHL_00104 109330 3 Vaginal 1.00 protein_coding missense_variant MODERATE 413A>C Asn138Thr
M0141979 GJPHGHHL_00104 109331 3 Vaginal 1.00 protein_coding synonymous_variant LOW 414T>C Asn138Asn
M0141980 GJPHGHHL_00104 109344 3 Vaginal 1.00 protein_coding synonymous_variant LOW 427T>C Leu143Leu
M0141981 GJPHGHHL_00104 109386 3 Vaginal 1.00 protein_coding synonymous_variant LOW 469T>C Leu157Leu
M0141982 GJPHGHHL_00104 109485 3 Vaginal 1.00 protein_coding synonymous_variant LOW 568T>C Leu190Leu
M0141983 GJPHGHHL_00104 109559 3 Vaginal 1.00 protein_coding synonymous_variant LOW 642C>T Gly214Gly
M0141984 GJPHGHHL_00104 109661 3 Vaginal 1.00 protein_coding missense_variant MODERATE 744T>G Asp248Glu
M0141985 GJPHGHHL_00104 109776 3 Vaginal 1.00 protein_coding missense_variant MODERATE 859G>A Glu287Lys
M0141986 GJPHGHHL_00104 109790 3 Vaginal 1.00 protein_coding synonymous_variant LOW 873A>G Glu291Glu
M0141987 GJPHGHHL_00104 110165 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1248G>A Leu416Leu
M0141988 GJPHGHHL_00104 110543 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1626G>A Thr542Thr
M0141989 GJPHGHHL_00104 110606 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1689T>C Tyr563Tyr
M0141990 GJPHGHHL_00104 110615 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1698G>A Gly566Gly
M0141991 GJPHGHHL_00104 111128 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2211G>A Lys737Lys
M0141992 GJPHGHHL_00104 111167 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2250T>C Cys750Cys
M0141993 GJPHGHHL_00104 111801 3 Vaginal 1.00 protein_coding missense_variant MODERATE 2884C>T His962Tyr
M0141994 GJPHGHHL_00101 111899 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -4733G>A None
M0141995 GJPHGHHL_00105 112061 3 Vaginal 1.00 protein_coding synonymous_variant LOW 141C>T Asp47Asp
M0141996 GJPHGHHL_00108 113551 3 Vaginal 1.00 protein_coding synonymous_variant LOW 273T>C Ser91Ser
M0141997 GJPHGHHL_00108 113572 3 Vaginal 1.00 protein_coding synonymous_variant LOW 294T>C Ile98Ile
M0141998 GJPHGHHL_00108 113671 3 Vaginal 1.00 protein_coding synonymous_variant LOW 393C>T His131His
M0141999 GJPHGHHL_00108 113686 3 Vaginal 1.00 protein_coding synonymous_variant LOW 408G>A Lys136Lys
M0142000 GJPHGHHL_00108 114010 3 Vaginal 1.00 protein_coding synonymous_variant LOW 732G>T Leu244Leu
M0142001 GJPHGHHL_00108 114193 3 Vaginal 1.00 protein_coding synonymous_variant LOW 915A>T Ala305Ala
M0142002 GJPHGHHL_00108 114244 3 Vaginal 1.00 protein_coding synonymous_variant LOW 966T>C Ser322Ser
M0142003 GJPHGHHL_00108 114337 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1059T>C Ser353Ser
M0142004 GJPHGHHL_00108 114377 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1099A>G Asn367Asp
M0142005 GJPHGHHL_00108 114553 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1275T>C Gly425Gly
M0142006 GJPHGHHL_00109 114869 3 Vaginal 1.00 protein_coding synonymous_variant LOW 198T>A Ile66Ile
M0142007 GJPHGHHL_00109 115232 3 Vaginal 1.00 protein_coding synonymous_variant LOW 561C>T Ile187Ile
M0142008 GJPHGHHL_00109 115254 3 Vaginal 1.00 protein_coding missense_variant MODERATE 583A>G Lys195Glu
M0142009 GJPHGHHL_00109 115263 3 Vaginal 1.00 protein_coding missense_variant MODERATE 592G>A Ala198Thr
M0142010 GJPHGHHL_00109 115285 3 Vaginal 1.00 protein_coding missense_variant MODERATE 614G>A Gly205Asp
M0142011 GJPHGHHL_00109 115286 3 Vaginal 1.00 protein_coding synonymous_variant LOW 615T>C Gly205Gly
M0142012 GJPHGHHL_00109 115793 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1122G>T Gly374Gly
M0142013 GJPHGHHL_00109 115794 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1123A>G Lys375Glu
M0142014 GJPHGHHL_00109 115817 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1146G>T Glu382Asp
M0142015 GJPHGHHL_00109 115833 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1162A>G Ile388Val
M0142016 GJPHGHHL_00109 115862 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1191T>C Asn397Asn
M0142017 GJPHGHHL_00109 115949 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1278C>T Tyr426Tyr
M0142018 GJPHGHHL_00109 116175 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1504A>C Asn502His
M0142019 GJPHGHHL_00109 116186 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1515A>G Thr505Thr
M0142020 GJPHGHHL_00109 116256 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1585A>G Thr529Ala
M0142021 GJPHGHHL_00109 116270 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1599A>G Leu533Leu
M0142022 GJPHGHHL_00109 116279 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1608A>T Glu536Asp
M0142023 GJPHGHHL_00109 116576 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1905A>G Thr635Thr
M0142024 GJPHGHHL_00110 116872 3 Vaginal 1.00 protein_coding synonymous_variant LOW 213A>G Leu71Leu
M0142025 GJPHGHHL_00110 117133 3 Vaginal 1.00 protein_coding missense_variant MODERATE 474T>G Asn158Lys
M0142026 GJPHGHHL_00110 117283 3 Vaginal 1.00 protein_coding synonymous_variant LOW 624G>A Lys208Lys
M0142027 GJPHGHHL_00110 117377 3 Vaginal 1.00 protein_coding missense_variant MODERATE 718A>G Ile240Val
M0142028 GJPHGHHL_00110 117510 3 Vaginal 1.00 protein_coding missense_variant MODERATE 851A>G Asp284Gly
M0142029 GJPHGHHL_00110 117715 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1056G>A Lys352Lys
M0142030 GJPHGHHL_00110 117757 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1098T>C Phe366Phe
M0142031 GJPHGHHL_00126 132408 3 Vaginal 1.00 protein_coding missense_variant MODERATE 256A>G Ile86Val
M0142032 GJPHGHHL_00126 132538 3 Vaginal 1.00 protein_coding missense_variant MODERATE 386G>A Arg129Lys
M0142033 GJPHGHHL_00128 132610 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -506G>A None
M0142034 GJPHGHHL_00127 132630 3 Vaginal 1.00 protein_coding synonymous_variant LOW 342A>G Lys114Lys
M0142035 GJPHGHHL_00127 132678 3 Vaginal 1.00 protein_coding synonymous_variant LOW 294T>C Ser98Ser
M0142036 GJPHGHHL_00127 132752 3 Vaginal 1.00 protein_coding synonymous_variant LOW 220T>C Leu74Leu
M0142037 GJPHGHHL_00127 132825 3 Vaginal 1.00 protein_coding missense_variant MODERATE 147T>G Asn49Lys
M0142038 GJPHGHHL_00127 132834 3 Vaginal 1.00 protein_coding missense_variant MODERATE 138A>T Glu46Asp
M0142039 GJPHGHHL_00127 132937 3 Vaginal 1.00 protein_coding missense_variant MODERATE 35A>G Asp12Gly
M0142040 GJPHGHHL_00127 132953 3 Vaginal 1.00 protein_coding missense_variant MODERATE 19A>G Ile7Val
M0142041 GJPHGHHL_00129 136485 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1632C>T Ser544Ser
M0142042 GJPHGHHL_00130 138141 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1366A>G Ile456Val
M0142043 GJPHGHHL_00130 138224 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1449G>T Val483Val
M0142044 GJPHGHHL_00131 138329 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -16A>T None
M0142045 GJPHGHHL_00131 138342 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -3A>T None
M0142046 GJPHGHHL_00131 138353 3 Vaginal 1.00 protein_coding synonymous_variant LOW 9C>T Asn3Asn
M0142047 GJPHGHHL_00131 138383 3 Vaginal 1.00 protein_coding missense_variant MODERATE 39A>G Ile13Met
M0142048 GJPHGHHL_00131 138404 3 Vaginal 1.00 protein_coding synonymous_variant LOW 60G>A Gln20Gln
M0142049 GJPHGHHL_00131 138481 3 Vaginal 1.00 protein_coding missense_variant MODERATE 137C>A Thr46Lys
M0142050 GJPHGHHL_00131 138575 3 Vaginal 1.00 protein_coding synonymous_variant LOW 231A>G Lys77Lys
M0142051 GJPHGHHL_00131 138578 3 Vaginal 1.00 protein_coding synonymous_variant LOW 234T>C Pro78Pro
M0142052 GJPHGHHL_00131 138692 3 Vaginal 1.00 protein_coding synonymous_variant LOW 348C>T Ser116Ser
M0142053 GJPHGHHL_00131 138709 3 Vaginal 1.00 protein_coding missense_variant MODERATE 365T>C Val122Ala
M0142054 GJPHGHHL_00131 138710 3 Vaginal 1.00 protein_coding synonymous_variant LOW 366A>C Val122Val
M0142055 GJPHGHHL_00131 138794 3 Vaginal 1.00 protein_coding synonymous_variant LOW 450C>T Asp150Asp
M0142056 GJPHGHHL_00131 138812 3 Vaginal 1.00 protein_coding synonymous_variant LOW 468T>G Ser156Ser
M0142057 GJPHGHHL_00131 138944 3 Vaginal 1.00 protein_coding synonymous_variant LOW 600A>T Thr200Thr
M0142058 GJPHGHHL_00131 139118 3 Vaginal 1.00 protein_coding synonymous_variant LOW 774A>G Gly258Gly
M0142059 GJPHGHHL_00131 139145 3 Vaginal 1.00 protein_coding synonymous_variant LOW 801A>G Lys267Lys
M0142060 GJPHGHHL_00131 139277 3 Vaginal 1.00 protein_coding missense_variant MODERATE 933T>A Asn311Lys
M0142061 GJPHGHHL_00131 139300 3 Vaginal 1.00 protein_coding missense_variant MODERATE 956T>C Val319Ala
M0142062 GJPHGHHL_00131 139394 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1050A>G Arg350Arg
M0142063 GJPHGHHL_00131 139413 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1069T>C Leu357Leu
M0142064 GJPHGHHL_00131 139463 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1119T>A Gly373Gly
M0142065 GJPHGHHL_00131 139497 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1153G>A Val385Ile
M0142066 GJPHGHHL_00131 139543 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1199C>T Ala400Val
M0142067 GJPHGHHL_00131 139544 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1200T>C Ala400Ala
M0142068 GJPHGHHL_00131 139551 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1207T>C Tyr403His
M0142069 GJPHGHHL_00132 139672 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2026T>C Leu676Leu
M0142070 GJPHGHHL_00132 139676 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2022G>A Leu674Leu
M0142071 GJPHGHHL_00132 139688 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2010G>A Leu670Leu
M0142072 GJPHGHHL_00132 139727 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1971C>T Tyr657Tyr
M0142073 GJPHGHHL_00132 139934 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1764T>C Asp588Asp
M0142074 GJPHGHHL_00132 140429 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1269T>C Ile423Ile
M0142075 GJPHGHHL_00132 140612 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1086G>A Lys362Lys
M0142076 GJPHGHHL_00132 140930 3 Vaginal 1.00 protein_coding synonymous_variant LOW 768C>T Gly256Gly
M0142077 GJPHGHHL_00132 141095 3 Vaginal 1.00 protein_coding synonymous_variant LOW 603C>T Asp201Asp
M0142078 GJPHGHHL_00132 141185 3 Vaginal 1.00 protein_coding synonymous_variant LOW 513C>T Gly171Gly
M0142079 GJPHGHHL_00132 141473 3 Vaginal 1.00 protein_coding synonymous_variant LOW 225A>C Val75Val
M0142080 GJPHGHHL_00132 141488 3 Vaginal 1.00 protein_coding synonymous_variant LOW 210C>T Ile70Ile
M0142081 GJPHGHHL_00132 141640 3 Vaginal 1.00 protein_coding missense_variant MODERATE 58A>G Arg20Gly
M0142082 GJPHGHHL_00133 142066 3 Vaginal 1.00 protein_coding synonymous_variant LOW 792G>A Leu264Leu
M0142083 GJPHGHHL_00136 146813 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1980C>T Phe660Phe
M0142084 GJPHGHHL_00136 146815 3 Vaginal 1.00 protein_coding missense_variant MODERATE 1982C>A Thr661Asn
M0142085 GJPHGHHL_00136 146833 3 Vaginal 1.00 protein_coding missense_variant MODERATE 2000T>C Val667Ala
M0142086 GJPHGHHL_00136 147028 3 Vaginal 1.00 protein_coding missense_variant MODERATE 2195A>T Lys732Ile
M0142087 GJPHGHHL_00136 147210 3 Vaginal 1.00 protein_coding missense_variant MODERATE 2377G>A Ala793Thr
M0142088 GJPHGHHL_00136 147308 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2475C>T Asn825Asn
M0142089 GJPHGHHL_00136 147313 3 Vaginal 1.00 protein_coding missense_variant MODERATE 2480A>G Lys827Arg
M0142090 GJPHGHHL_00136 147338 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2505G>A Gly835Gly
M0142091 GJPHGHHL_00136 147464 3 Vaginal 1.00 protein_coding missense_variant MODERATE 2631A>G Ile877Met
M0142092 GJPHGHHL_00136 147542 3 Vaginal 1.00 protein_coding synonymous_variant LOW 2709T>C Tyr903Tyr
M0142093 GJPHGHHL_00133 147581 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -4724C>T None
M0142094 GJPHGHHL_00133 147705 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -4848C>T None
M0142095 GJPHGHHL_00133 147793 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -4936G>A None
M0142096 GJPHGHHL_00137 147841 3 Vaginal 1.00 protein_coding synonymous_variant LOW 48G>T Val16Val
M0142097 GJPHGHHL_00137 147901 3 Vaginal 1.00 protein_coding synonymous_variant LOW 108G>A Ser36Ser
M0142098 GJPHGHHL_00137 147982 3 Vaginal 1.00 protein_coding synonymous_variant LOW 189A>G Lys63Lys
M0142099 GJPHGHHL_00137 148408 3 Vaginal 1.00 protein_coding synonymous_variant LOW 615A>T Ala205Ala
M0142100 GJPHGHHL_00139 149221 3 Vaginal 1.00 protein_coding synonymous_variant LOW 69T>C Asn23Asn
M0142101 GJPHGHHL_00139 149590 3 Vaginal 1.00 protein_coding synonymous_variant LOW 438T>C Asp146Asp
M0142102 GJPHGHHL_00141 150064 3 Vaginal 1.00 protein_coding upstream_gene_variant MODIFIER -130A>G None
M0142103 GJPHGHHL_00142 150718 3 Vaginal 1.00 protein_coding synonymous_variant LOW 120A>G Glu40Glu
M0142104 GJPHGHHL_00142 151062 3 Vaginal 1.00 protein_coding missense_variant MODERATE 464A>G Lys155Arg
M0142105 GJPHGHHL_00142 151088 3 Vaginal 1.00 protein_coding missense_variant MODERATE 490A>G Thr164Ala
M0142106 GJPHGHHL_00142 151126 3 Vaginal 1.00 protein_coding synonymous_variant LOW 528C>T Val176Val
M0142107 GJPHGHHL_00142 151150 3 Vaginal 1.00 protein_coding synonymous_variant LOW 552A>T Thr184Thr
M0142108 GJPHGHHL_00142 151168 3 Vaginal 1.00 protein_coding synonymous_variant LOW 570C>T Asp190Asp
M0142109 GJPHGHHL_00142 151198 3 Vaginal 1.00 protein_coding synonymous_variant LOW 600G>A Ala200Ala
M0142110 GJPHGHHL_00142 151204 3 Vaginal 1.00 protein_coding synonymous_variant LOW 606C>T Asn202Asn
M0142111 GJPHGHHL_00142 151405 3 Vaginal 1.00 protein_coding synonymous_variant LOW 807A>G Ala269Ala
M0142112 GJPHGHHL_00142 151783 3 Vaginal 1.00 protein_coding synonymous_variant LOW 1185A>G Lys395Lys
M0142113 GJPHGHHL_00143 152470 3 Vaginal 1.00 protein_coding synonymous_variant LOW 255A>T Arg85Arg
M0142114 GJPHGHHL_00143 152650 3 Vaginal 1.00 protein_coding synonymous_variant LOW 435G>A Val145Val
M0142115 GJPHGHHL_00143 152698 3 Vaginal 1.00 protein_coding synonymous_variant LOW 483C>T Asn161Asn
M0142116 GJPHGHHL_00143 152782 3 Vaginal 1.00 protein_coding synonymous_variant LOW 567A>G Gly189Gly
M0142117 GJPHGHHL_00143 152794 3 Vaginal 1.00 protein_coding synonymous_variant LOW 579C>T Asp193Asp
M0142118 GJPHGHHL_00143 152830 3 Vaginal 1.00 protein_coding synonymous_variant LOW 615A>T Gly205Gly
M0142119 GJPHGHHL_00143 152902 3 Vaginal 1.00 protein_coding synonymous_variant LOW 687A>G Gly229Gly
M0142120 GJPHGHHL_00143 152932 3 Vaginal 1.00 protein_coding synonymous_variant LOW 717A>G Val239Val
M0142121 GJPHGHHL_00143 152941 3 Vaginal 1.00 protein_coding missense_variant MODERATE 726G>T Lys242Asn
M0142122 GJPHGHHL_00144 153000 3 Vaginal 1.00 protein_coding synonymous_variant LOW 9G>A Leu3Leu
M0142123 GJPHGHHL_00144 153069 3 Vaginal 1.00 protein_coding synonymous_variant LOW 78G>A Leu26Leu
M0142124 GJPHGHHL_00144 153078 3 Vaginal 1.00 protein_coding synonymous_variant LOW 87C>T Phe29Phe
M0142125 GJPHGHHL_00144 153081 3 Vaginal 1.00 protein_coding synonymous_variant LOW 90T>C Gly30Gly
M0142126 GJPHGHHL_00144 153124 3 Vaginal 1.00 protein_coding synonymous_variant LOW 133C>T Leu45Leu
M0142127 GJPHGHHL_00144 153300 3 Vaginal 1.00 protein_coding synonymous_variant LOW 309C>T Asp103Asp
M0142128 GJPHGHHL_00145 154034 3 Vaginal 1.00 protein_coding synonymous_variant LOW 132G>A Glu44Glu
M0142129 GJPHGHHL_00145 154055 3 Vaginal 1.00 protein_coding synonymous_variant LOW 153G>A Lys51Lys
M0142130 GJPHGHHL_00145 154341 3 Vaginal 1.00 protein_coding missense_variant MODERATE 439G>C Glu147Gln
M0142131 GJPHGHHL_00146 154812 3 Vaginal 1.00 protein_coding synonymous_variant LOW 291C>T Phe97Phe
M0142132 GJPHGHHL_00146 154866 3 Vaginal 1.00 protein_coding synonymous_variant LOW 345C>T Cys115Cys
M0142133 GJPHGHHL_00146 154872 3 Vaginal 1.00 protein_coding synonymous_variant LOW 351T>C Tyr117Tyr
M0142134 GJPHGHHL_00146 155325 3 Vaginal 1.00 protein_coding synonymous_variant LOW 804T>C Asn268Asn
M0142135 GJPHGHHL_00146 155334 3 Vaginal 1.00 protein_coding synonymous_variant LOW 813A>G Val271Val
M0142136 GJPHGHHL_00146 155397 3 Vaginal 1.00 protein_coding synonymous_variant LOW 876A>G Lys292Lys
M0142137 GJPHGHHL_00147 155849 3 Vaginal 1.00 protein_coding synonymous_variant LOW 295T>C Leu99Leu
M0142138 GJPHGHHL_00148 156617 3 Vaginal 1.00 protein_coding synonymous_variant LOW 516T>C Tyr172Tyr
M0142139 GJPHGHHL_00148 156626 3 Vaginal 1.00 protein_coding synonymous_variant LOW 525T>C Ile175Ile
M0142140 GJPHGHHL_00148 157088 3 Vaginal 1.00 protein_coding synonymous_variant LOW 987A>T Gly329Gly
M0142141 GJPHGHHL_00149 157357 3 Vaginal 1.00 protein_coding missense_variant MODERATE 154A>G Ile52Val
M0142142 GJPHGHHL_00149 157488 3 Vaginal 1.00 protein_coding synonymous_variant LOW 285G>T Ala95Ala
M0142143 GJPHGHHL_00149 157615 3 Vaginal 1.00 protein_coding missense_variant MODERATE 412A>G Ile138Val
M0142144 GJPHGHHL_00149 157652 3 Vaginal 1.00 protein_coding missense_variant MODERATE 449T>C Ile150Thr
M0142145 GJPHGHHL_00149 157706 3 Vaginal 1.00 protein_coding missense_variant MODERATE 503A>G Lys168Arg
M0142146 GJPHGHHL_00149 157806 3 Vaginal 1.00 protein_coding missense_variant MODERATE 603T>G Asp201Glu
M0142147 GJPHGHHL_00149 157808 3 Vaginal 1.00 protein_coding missense_variant MODERATE 605G>A Ser202Asn
M0142148 GJPHGHHL_00151 158846 3 Vaginal 1.00 protein_coding missense_variant MODERATE 490A>G Asn164Asp
M0142149 GJPHGHHL_00151 158959 3 Vaginal 1.00 protein_coding synonymous_variant LOW 603A>G Lys201Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
GJPHGHHL_00048 AKC95827.1|GT28 99.2 4.88e-258 1 360 1 1
GJPHGHHL_00067 AKC96161.1|GH77 99.4 0 11 492 0.9797 1
GJPHGHHL_00091 AKC95792.1|GH3 99.6 0 1 570 1 1
GJPHGHHL_00092 AKC95791.1|GH2 99.5 0 1 584 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term